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GenomicsRNA-immunoprecipitation of mTRAN1-GFP
RNA-immunoprecipitation of mTRAN1-GFP
PRJEB63171 | ENA
ProteomicsInteractome of Ub-GFP and Ub-GFP-tail
Immunoprecipitation of Ub-GFP and Ub-GFP-tail expressed in HCT116 cells using GFP-Trap.
ORGANISM(S): Homo sapiens (Human) 
2025-08-18 | PXD066134 | Pride
Ubiquitin Gfp 
TranscriptomicsIdentification of the miRNA targetome in hippocampal neurons using RIP-seq
We established a neuron-specific Argonaute2:GFP-RNA immunoprecipitation followed by high throughput sequencing (AGO2-RIP-seq) to analyse the regulatory role of miRNAs in mouse hippocampal neurons. Using this technique, we identified more than two thousand miRNA target genes in hippocampal neurons, r...
ORGANISM(S): Mus musculus 
2015-07-31 | E-GEOD-65543 | biostudies-arrayexpress
TranscriptomicsChIP-chip from Candida albicans cells with GFP-LYS142, GFP-LYS143, GFP-LYS14, and GFP-LYS144
LYS142, LYS143, LYS14 and LYS144 compose a family of recently duplicated transcription regulators in C. albicans. They have differentiated from one another by acquiring a largely separate set of target genes. Chromatin immunoprecipitation (ChIP) of GFP-LYS142, GFP-LYS143, GFP-LYS14 and GFP-LYS144 fo...
ORGANISM(S): Candida albicans 
2013-12-01 | E-GEOD-52203 | biostudies-arrayexpress
GenomicsIdentification of Transcription Factor EGL-5::GFP Binding Regions in L3
modENCODE_submission_3159 This submission comes from a modENCODE project of Michael Snyder. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is ta...
ORGANISM(S): Caenorhabditis elegans 
2011-03-31 | E-GEOD-25796 | biostudies-arrayexpress
GenomicsIdentification of Transcription Factor PHA-4::GFP Binding Regions in YA
modENCODE_submission_3161 This submission comes from a modENCODE project of Michael Snyder. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is ta...
ORGANISM(S): Caenorhabditis elegans 
2011-03-31 | E-GEOD-25799 | biostudies-arrayexpress
GenomicsIdentification of Transcription Factor EOR-1::GFP Binding Regions in GFP
modENCODE_submission_3372 This submission comes from a modENCODE project of Michael Snyder. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is ta...
ORGANISM(S): Caenorhabditis elegans 
2011-05-24 | E-GEOD-29473 | biostudies-arrayexpress
ProteomicsProteomics data of GFP::PGL-3 IP-MS compared to GFP control
We carried out immunoprecipitation-mass spectrometry (IP-MS) analysis to identify the protein components of PGL granules in heat-stressed embryos. GFP::PGL-3 proteins were immunoprecipitated from extracts of embryos grown at 26 oC and the interacting proteins were identified by LC-MS/MS. Proteins in...
ORGANISM(S): Caenorhabditis elegans 
2023-04-01 | PXD040246 | Pride
Gfp::pgl-3 Ip-ms C.elegans Pgl granules 
TranscriptomicsChip-chip from Candida albicans cells with HMS1-MYC, RTG1-MYC, RTG3-MYC, GFP-ZCF21, GFP-LYS14, GFP-LYS144
The transcription regulators HMS1, RTG1, RTG3, ZCF21, LYS14 and LYS144 play roles in the proliferation of C. albicans in a mammalian host. Chromatin immunoprecipitation (ChIP) of HMS1-MYC, RTG1-MYC, RTG3-MYC, GFP-ZCF21, GFP-LYS14, GFP-LYS144 followed by array hybridization (Agilent) uncovered a netw...
ORGANISM(S): Candida albicans 
2012-10-02 | E-GEOD-41237 | biostudies-arrayexpress
ProteomicsCo-immunoprecipitation of GFP-Snx33
In this project we aimed at identifying proteins interacting with Snx33. For this purpose, we have generated a Snx33 knockout cell lines with GFP-tagged full length Snx33 and GFP-tagged truncation of Snx33: dPXBAR (1-214aa) and PXBAR (159-574aa).
ORGANISM(S): Homo sapiens (Human) 
2023-06-19 | PXD033666 | Pride
Snx33 
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