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TranscriptomicsPotential biomarker genes for crowding stress in maraena whitefish Coregonus lavaretus
Stress represents a major factor negatively affecting fish welfare in aquaculture. The objective of the present study was to identify and evaluate informative indicators for the welfare and particular health status of maraena whitefish (Coregonus maraena) farmed at four different stocking densities....
ORGANISM(S): Coregonus lavaretus 
2016-01-06 | E-GEOD-76543 | biostudies-arrayexpress
ProteomicsIdentification of a cryptic MHC-E epitope from influenza virus
B6-CIITA-E cell line (C57Bl/6 fibroblasts expressing MHC-II molecules I-Ab and I-Ed) was infected with Influenza A virus (A/Puerto Rico/8/1934, PR8) or left uninfected (control), and the MHC-class II-associated peptidome analysed via immunopeptidomics.
ORGANISM(S): Mus musculus (Mouse) 
2023-10-10 | PXD045025 | Pride
Influenza a virus Viral infection Mhc Immunopeptidomics 
TranscriptomicsPotential biomarker genes for crowding stress in rainbow trout Oncorhynchus mykiss
Stocking density is considered as a key factor determining the productivity of fish aquaculture systems. The transcriptomic response to crowding stress is, however, still poorly investigated. We aimed at the identification of potential biomarker genes via microarray analyses to get insight into mole...
ORGANISM(S): Oncorhynchus mykiss 
2015-10-24 | E-GEOD-74332 | biostudies-arrayexpress
TranscriptomicsEarly transcriptional changes in Zea mays seedlings exposed to Z-3-hexenol
Z-3-Hexenol and other green leaf volatiles have been known to induce defense-related gene expression. Here we investigated the early transcriptional changes in response to Z-3-hexenol. 3-week-old Zea mays seedling (inbred line B73) was exposed to pure Z-3-hexenol (1.5 μM) in a glass cylinder. Contr...
ORGANISM(S): Zea mays 
2013-06-15 | E-GEOD-47982 | biostudies-arrayexpress
TranscriptomicsTranscription analysis of E. coli processed at persistent and decreasing glucose limitation in a fed-batch cultivation
A time series of whole-genome transcription profiling of E. coli K-12 W3110 was performed to study the dynamic physiological response of E. coli K-12 W3110 to limited carbon conditions. cDNA from eight time intervals after glucose limitation, representing different stages of glucose depletion, along...
ORGANISM(S): Escherichia coli W3110 
2010-05-19 | E-GEOD-10307 | biostudies-arrayexpress
TranscriptomicsRNA-seq of zebrafish embryos exposed to different sublethal concentrations of ethinylestradiol for 96 hours against non-treated control groups
Endocrine disruption (ED) can trigger far-reaching effects on environmental populations, justifying a refusal of market approval for chemicals with ED properties. For the assessment of ED effects on development and reproduction, regulatory decisions mostly rely on apical endpoints from in vivo testi...
ORGANISM(S): Danio rerio 
2023-05-10 | E-MTAB-12221 | biostudies-arrayexpress
TranscriptomicsRNA-seq of zebrafish embryos exposed to different sublethal concentrations of flutamide for 96 hours against non-treated control groups
Endocrine disruption (ED) can trigger far-reaching effects on environmental populations, justifying a refusal of market approval for chemicals with ED properties. For the assessment of ED effects on development and reproduction, regulatory decisions mostly rely on apical endpoints from in vivo testi...
ORGANISM(S): Danio rerio 
2023-05-10 | E-MTAB-12235 | biostudies-arrayexpress
TranscriptomicsRNA-seq of zebrafish embryos exposed to different sublethal concentrations of tamoxifen for 96 hours against non-treated control groups
Endocrine disruption (ED) can trigger far-reaching effects on environmental populations, justifying a refusal of market approval for chemicals with ED properties. For the assessment of ED effects on development and reproduction, regulatory decisions mostly rely on apical endpoints from in vivo testi...
ORGANISM(S): Danio rerio 
2023-05-10 | E-MTAB-12227 | biostudies-arrayexpress
TranscriptomicsRNA-seq of zebrafish embryos exposed to different sublethal concentrations of methyltestosterone for 96 hours against non-treated control groups
Endocrine disruption (ED) can trigger far-reaching effects on environmental populations, justifying a refusal of market approval for chemicals with ED properties. For the assessment of ED effects on development and reproduction, regulatory decisions mostly rely on apical endpoints from in vivo testi...
ORGANISM(S): Danio rerio 
2023-05-10 | E-MTAB-12229 | biostudies-arrayexpress
MetabolomicsPseudomonas sp. Strain 273 Incorporates Organofluorine into the Lipid Bilayer during Growth with Fluorinated Alkanes
Anthropogenic organofluorine compounds are recalcitrant, globally distributed, and a human health concern. Although rare, natural processes synthesize fluorinated compounds, and some bacteria have evolved mechanisms to metabolize organofluorine compounds. Pseudomonas sp. strain 273 grows with...
2022-06-06 | MTBLS3893 | MetaboLights
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