Glomerulus - OmicsDI

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Unknown (556)
Transcriptomics (211)
Genomics (88)
Proteomics (54)
Metabolomics (4)
Other (2)
Models (1)

Organisms

Mus musculus (124)
Homo sapiens (77)
Bombyx mori (37)
Schizosaccharomyces pombe (37)
Human immunodeficiency virus 1 (37)
Oryza sativa Indica Group (37)
Sinorhizobium meliloti BL225C (37)
Sus scrofa domesticus (37)
Ostreococcus tauri (37)
Saccharomyces cerevisiae (37)
Vitis vinifera (37)
Staphylococcus aureus (37)
Rattus norvegicus (37)
Rattus norvegicus (17)
Medicago truncatula (4)
Mesocricetus auratus (3)
Solanum tuberosum (2)
Solanum lycopersicum (2)
Danio rerio (2)
Oreochromis mossambicus (1)
Anguilla anguilla (1)
Ambystoma mexicanum (1)
Xenopus laevis (1)
Hordeum vulgare (1)
Gadus morhua (1)
Bos taurus (1)
Sus scrofa (1)
Rattus (1)
Drosophila melanogaster (1)
Rattus rattus (1)

Organisms

Mus musculus (36)
Homo sapiens (20)
Rattus norvegicus (2)
Rattus (1)
Danio rerio (1)
Drosophila melanogaster (1)

Repository

biostudies-arrayexpress (168)
ENA (72)
geo (54)
pride (37)
EGA (11)
MassIVE (5)
MetaboLights (4)
iProX (3)
jPOST (2)
PeptideAtlas (2)
ExpressionAtlas (1)
BioModels (1)
PAXDB (1)

Tissue

Kidney (29)
Renal glomerulus (8)
Glomerular cell (3)
Kidney (2)
Podocyte (sensu Diptera) (2)
Primary cell (2)
Epithelial cell (2)
Renal glomerular capsule (1)
Glomerular mesangial cell (1)
Glomerular visceral epithelial cell (1)
Blood plasma (1)
Stem cell (1)

Disease

Focal segmental glomerulosclerosis (3)
Nephrotic syndrome (1)
Kidney disease (1)
Membranous glomerulonephritis (1)

Technology Type

Mass Spectrometry (37)
Shotgun proteomics (22)
Bottom-up proteomics (10)
Mass spectrometry (3)
Data-independent acquisition (3)
Gel-based experiment (3)
Data-dependent acquisition (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2500 (1)
NMR spectroscopy assay (1)
SWATH MS (1)
Top-down proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (7)
Illumina HiSeq 2500 (3)
Illumina NovaSeq X (2)
Q Exactive Plus (2)
Bruker Esquire (2)
PALM Robo LCM (1)
5-Laser BD FACSAria III (1)
10X Genomics Chromium (1)
Beadarray reader (1)
None (1)
Illumina Genome Analyzer (1)
Axon- GenePix4000B (1)
Illumina MiniSeq (1)
NextSeq 2000 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
TimsTOF fleX (1)
Orbitrap Fusion (1)
Q Exactive HF (1)
Nuclear Magnetic Resonance (NMR) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
5975C Series GC/MSD (Agilent) (1)
Gas Chromatography MS - (1)
Agilent 1100 Series LC/MSD Trap (1)

Publication Date

2010 (25)
2014 (24)
2013 (21)
2025 (20)
2012 (20)
2015 (17)
2022 (14)
2009 (14)
2024 (13)
2023 (11)
2019 (11)
2018 (11)
2011 (11)
2016 (10)
2008 (10)
2020 (9)
2021 (8)
2026 (8)
2007 (6)
2017 (5)
2005 (4)
2006 (1)
2003 (1)
2002 (1)

UNIPROT ID/AC

SC6A1_MOUSE (1)
NECA2_MOUSE (1)
PPR17_MOUSE (1)
CTND2_MOUSE (1)
NRIP3_MOUSE (1)
Q1RME4_MOUSE (1)
B4GN2_MOUSE (1)
MCH_MOUSE (1)
APBA1_MOUSE (1)
NEC1_MOUSE (1)
LGI2_MOUSE (1)
CAC1A_MOUSE (1)
NEGR1_MOUSE (1)
HECAM_MOUSE (1)
S0DHL8_MOUSE (1)
BRSK1_MOUSE (1)
ARRC_MOUSE (1)
ENDOU_MOUSE (1)
B2RWC4_MOUSE (1)
SHAN2_MOUSE (1)
KCJ10_MOUSE (1)
F169A_MOUSE (1)
SYBU_MOUSE (1)
LY6H_MOUSE (1)
Q5EER8_MOUSE (1)
RB39B_MOUSE (1)
GRIA3_MOUSE (1)
ASTN1_MOUSE (1)
CNTP2_MOUSE (1)
UN13A_MOUSE (1)

ENSEMBL ID

ENSG00000170477 (2)

CHEBI ID

CHEBI:16199 (3)
CHEBI:16997 (3)
CHEBI:16000 (3)
CHEBI:15891 (3)
CHEBI:7916 (3)
CHEBI:21547 (3)
CHEBI:17268 (3)
CHEBI:16865 (3)
CHEBI:18012 (3)
CHEBI:30769 (3)
CHEBI:20067 (3)
CHEBI:17568 (3)
CHEBI:16027 (3)
CHEBI:16856 (3)
CHEBI:15428 (3)
CHEBI:32816 (3)
CHEBI:17754 (3)
CHEBI:15741 (3)
CHEBI:16737 (3)
CHEBI:16919 (3)
CHEBI:16708 (3)
CHEBI:17154 (3)
CHEBI:78320 (3)
CHEBI:16135 (2)
CHEBI:33984 (2)
CHEBI:11805 (2)
CHEBI:67119 (2)
CHEBI:30751 (2)
CHEBI:22652 (2)
CHEBI:17790 (2)

Metabolite Name

3-Hydroxybutyrate (3)
Ethanolamine (3)
Urea (3)
Myo-Inositol (3)
Uracil (3)
AMP (3)
Adenine (3)
Glycine (3)
Creatinine (3)
Creatine (3)
Glycerol (3)
Taurine (3)
Pi-Methylhistidine (2)
Isopropanol (2)
Dimethyl sulfone (2)
3-Hydroxyisovalerate (2)
4-Aminobutyrate (2)
O-Phosphocholine (2)
2-Hydroxybutyrate (2)
Isobutyrate (2)
Methanol (2)
Fucose (2)
Malonate (2)
N-Acetylaspartate (2)
2-Hydroxyisovalerate (2)
Pyroglutamate (2)
3-Hydroxyisobutyrate (2)
Formate (2)
Acetate (2)
UDP-glucose (2)

First Public Date

2014 (14)
2026 (9)
2024 (8)
2020 (8)
2025 (7)
2019 (6)
2022 (4)
2023 (3)
2018 (3)
2017 (3)
2015 (3)
2013 (2)
2021 (1)
2016 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

University Hospital Cologne (4)
Department of Genome Sciences, University of Washington, Seattle (3)
Wellcome Centre for Cell-Matrix Research, Division of Cell-Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester Academic Health Science Centre, Manchester, UK. (2)
Faculty of Human and Medical Science (2)
Dr. Jörn Dengjel Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (2)
III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (2)
Department of Nephrology, Children's Hospital of Fudan University, National Pediatric Medical Center of China, Shanghai, China. (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai 201203, China (1)
Wellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences and Institute of Human Development, Faculty of Medical and Human Sciences, University of Manchester, Manchester, UK (1)
Department II of Internal Medicine and Center for Molecular Medicine Cologne, Faculty of Medicine and University Hospital Cologne, University of Cologne, Cologne, Germany (1)
1.Wellcome Centre for Cell-Matrix Research, Division of Cell-Matrix Biology and Regenerative Medicine, School of Biological Sciences, Faculty of Biology Medicine and Health, The University of Manchester, Manchester Academic Health Science Centre, Manchester, UK. (1)
University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Medical School of Nanjing University, Nanjing, 210093, China. (1)
Department of Medicine (1)
Graduate School of Medical and Dental Sciences (1)
Aarhus University Department of Biomedicine 8000 Aarhus C Denmark (1)
University of Cologne, CECAD (1)
Pediatric Nephrology, Department of Pediatrics Faculty of Medicine and University Hospital Cologne, Kerpener Street 62, 50937, Cologne, Germany (1)
Professor of Laboratory Medicine and Pathology; ConsultantPathology (1)
Wellcome Centre for Cell-matrix biology, University of Manchester, UK. (1)
Proteomics Core Facility, Sahlgrenska Academy, University of Gothenburg, Sweden (1)
1) Department II of Internal Medicine and Center for Molecular Medicine Cologne, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany 2) CECAD, University of Cologne, Faculty of Medicine and University Hospital Cologne, Cologne, Germany (1)
Univ. Bordeaux, CNRS, ImmunoConcEpT, UMR 5164, 146 rue Léo Saignat, F-33000 Bordeaux, France (1)
Renal Research Group, Department of Clinical Medicine, Faculty of Medicine, University of Bergen, Norway (1)
The University of Manchester (1)
Institut National de la Santé et de la Recherche Médicale (INSERM), U1048, Institut of Cardiovascular and Metabolic Disease, Toulouse, France. Université Toulouse III Paul-Sabatier, Toulouse, France. (1)
University Hosptial Cologne (1)
Pacific Northwest National Laboratory, USA (1)

IsPrivate

False (1)

Modification

Not available (1)

Study type

Transcription profiling by array (123)
RNA-seq of coding RNA (22)
Transcription profiling by SAGE (5)
Unknown experiment type (3)
RNA-seq of coding RNA from single cells (3)
Proteomic profiling by array (2)
Cell line - One-color microarray (1)
Antigen profiling (1)
MicroRNA profiling by high throughput sequencing (1)
Comparative genomic hybridization by array (1)
Single nucleus RNA sequencing (1)
ChIP-seq (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (67)
2023 (54)
2021 (53)
2014 (48)
2025 (46)
2020 (45)
2024 (42)
2019 (39)
2016 (39)
2015 (36)
2010 (35)
2017 (32)
2012 (32)
2018 (31)
2013 (29)
2011 (21)
2009 (19)
2008 (16)
2007 (11)
2026 (8)
2006 (5)
2005 (5)
2003 (4)
1999 (3)
2004 (2)
2002 (1)
1997 (1)

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Systematic analysis of a human renal transcript dataset

Glomerular diseases account for the majority of cases with chronic renal failure. Several genes have been identified with key relevance for glomerular function. Quite a few of these genes show a specific or preferential mRNA expression in the renal glomerulus. To identify additional candidate genes ...

ORGANISM(S): Homo sapiens

2010-07-19 | E-GEOD-21785 | biostudies-arrayexpress

Transcription profiling of 8-day-old Podocin-Cre, Z/EG double transgenic mice glomerulus and brain

Mouse glomeruli and brain capillary fragments were prepared. Podocytes were separated from isolated glomeruli from 8-day-old Podocin-Cre, Z/EG double transgenic mice as follows: Isolated glomeruli were incubated with trypsin solution containing 0.2 % trypsin-EDTA (Sigma-Aldrich), 100ug/ml Heparin an...

ORGANISM(S): Mus musculus

2006-10-31 | E-MEXP-492 | biostudies-arrayexpress

Transcriptional profiling of mouse glomerulus in lipopolysaccharide-induced proteinuria model

The pathogenic mechanisms of common kidney glomerular diseases, including the vast majority of cases of proteinuria, remain unknown. To gain insight into the pathogenesis of proteinuria development, we characterized the glomerular gene expression changes that accompany early stages of proteinuria in...

ORGANISM(S): Mus musculus

2009-08-25 | E-GEOD-12599 | biostudies-arrayexpress

Expression data from podocyte injured glomerulus

PRJNA439317 | ENA

Pathogenic pathways are activated in each major cell type of the glomerulus in the Cd2ap mutant mouse model of focal segmental glomerulosclerosis

Mutations in several genes expressed in podocytes, including Cd2ap, have been associated with focal segmental glomerulosclerosis in humans. Mutant mouse models provide an opportunity to better understand the molecular pathology that drives these diseases. In this report we use a battery of transgeni...

ORGANISM(S): Mus musculus

2015-03-03 | E-GEOD-63272 | biostudies-arrayexpress

Physiological replication of the glomerulus using a triple culture microphysiological system.

PRJNA870592 | ENA

Biomimetic models of the glomerulus.

Not available

S-EPMC9949601 | biostudies-literature

Single-Cell Transcriptome Profiling of the Kidney Glomerulus Identifies Key Cell Types and Reactions to Injury

PRJNA612350 | ENA

Sparsened neuronal activity in an optogenetically activated olfactory glomerulus.

Not available

S-EPMC6175855 | biostudies-literature