Glycan - OmicsDI

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Unknown (7379)
Proteomics (992)
Transcriptomics (527)
Genomics (444)
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Other (17)
Methylation profiling (3)
Models (2)
Clinical (1)

Organisms

Homo sapiens (273)
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Bacteria (2)
human gut metagenome (2)
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Organisms

Homo sapiens (123)
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mouse gut metagenome (4)
chicken gut metagenome (3)
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Paulinella micropora (1)

Repository

pride (678)
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Disease

Breast cancer (15)
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Alzheimer's disease (5)
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Lymphoma (4)
Acute leukemia (4)
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Malignant neoplasm of ovary (3)
Rheumatoid arthritis (3)
Multiple myeloma (2)
Not Available (2)
Acute gastroenteritis (2)
Septic shock (2)
Oral squamous cell carcinoma (2)
Diabetes mellitus (2)
Gastric adenocarcinoma (2)
Cholangiocarcinoma (2)
Uninfected (1)
Pancreatic ductal adenocarcinoma (1)
Oligodendroglioma (1)
Leukemia (1)
Melanoma (1)

Technology Type

Mass Spectrometry (678)
Shotgun proteomics (366)
Bottom-up proteomics (142)
Data-dependent acquisition (84)
Affinity purification coupled with mass spectrometry proteomics (52)
Gel-based experiment (50)
Mass spectrometry (36)
Top-down proteomics (27)
Glycoproteomics (26)
Mass spectrometry assay (16)
SRM/MRM (14)
SWATH MS (12)
All-ion fragmentation (11)
Mass spectrometry imaging (7)
HDMSE (6)
MSE (5)
Data-independent acquisition (5)
Proteogenomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
NMR spectroscopy (2)
NMR spectroscopy assay (1)
Metaproteomics (1)

Instrument Platform

Illumina HiSeq 2000 (7)
NextSeq 500 (6)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 2500 (3)
Ultrospec 3000 (2)
ArrayWoRx Biochip Reader [Applied Precision] (2)
Axon- GenePix4000B (2)
Variable Atmosphere Incubator (2)
Illumina HiSeq 4000 (2)
Instrument (2)
IPK PhenoSphere (1)
Linux (1)
TruSeq stranded Total RNA kit (Illumina) (1)
The RNeasy mini kit (Qiagen) (1)
Covaris sonicator, PCR thermocycler, magnetic rack for SPRI bead clean-up (1)
Liquid-nitrogen mortar and pestle, benchtop microcentrifuge, vortex mixer (1)
Dissecting tools, liquid nitrogen, −80 °C freezer (1)
Controlled-environment growth chamber (short-day; 8 h light / 16 h dark) (1)
TruSeq Stranded Total RNA with Ribo Zero Human/Mouse/Rat. (1)
CD Small RNA Library Prep Kit (1)
ArrayWoRx Multi-Format Reader [Applied Precision] (1)
Agilent Technologies G2505B scanner (1)
ScanArray 5000 [PerkinElmer] (1)
BD GasPak 150 Jar (1)
Illumina Genome Analyzer IIx (1)
G2565BA DNA microarray scanner [Agilent] (1)
GenePix 4000B [Axon Instruments] (1)
DNBSEQ-G400 (1)
Illumina MiSeq (1)
AmaZon ETD ESI Ion Trap (Bruker) (1)

Publication Date

2024 (171)
2025 (170)
2022 (145)
2026 (137)
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2021 (111)
2011 (105)
2020 (98)
2019 (65)
2015 (60)
2018 (53)
2013 (51)
2017 (48)
2010 (46)
2016 (37)
2009 (34)
2012 (32)
2008 (32)
2014 (20)
2007 (13)
2006 (6)
2005 (6)

UNIPROT ID/AC

CATC_PSEAE (1)
Q9I0X7_PSEAE (1)
G3XCU5_PSEAE (1)
NCASE_PSEAE (1)
Q9I2B9_PSEAE (1)
Q9I227_PSEAE (1)
Q9HYJ7_PSEAE (1)
Q9I3H8_PSEAE (1)
Q9I4V7_PSEAE (1)
Q9I6G6_PSEAE (1)
Q9I0F6_PSEAE (1)
Q9HT08_PSEAE (1)
PY2CR_PSEAE (1)
Q9I554_PSEAE (1)
Q9I1J9_PSEAE (1)
Q9I2C8_PSEAE (1)
Q9HZR9_PSEAE (1)
PHHY_PSEAE (1)
Q9HUH0_PSEAE (1)
Q9HZ08_PSEAE (1)
Q9HTB2_PSEAE (1)
Q9HXT0_PSEAE (1)
Y2418_PSEAE (1)
Q9HUR5_PSEAE (1)
Q9I1D7_PSEAE (1)
Q9HU84_PSEAE (1)
HDAH_PSEAE (1)
Y1839_PSEAE (1)
Q9I496_PSEAE (1)
Q9I124_PSEAE (1)

CHEBI ID

CHEBI:26271 (8)
CHEBI:25017 (8)
CHEBI:28044 (8)
CHEBI:17268 (7)
CHEBI:18012 (7)
CHEBI:17596 (7)
CHEBI:15428 (7)
CHEBI:28300 (7)
CHEBI:16811 (7)
CHEBI:16708 (7)
CHEBI:30915 (7)
CHEBI:25094 (7)
CHEBI:17203 (6)
CHEBI:15891 (6)
CHEBI:7916 (6)
CHEBI:30769 (6)
CHEBI:17568 (6)
CHEBI:16335 (6)
CHEBI:16750 (6)
CHEBI:16027 (6)
CHEBI:32816 (6)
CHEBI:16449 (6)
CHEBI:17822 (6)
CHEBI:15741 (6)
CHEBI:6650 (6)
CHEBI:22660 (6)
CHEBI:22653 (6)
CHEBI:27266 (6)
CHEBI:18257 (6)
CHEBI:17368 (6)

Metabolite Name

Guanine (11)
Taurine (11)
Xanthine (11)
Adenine (10)
Guanosine (10)
Uridine (10)
L-Tyrosine (9)
Citrulline (9)
Inosine (9)
L-Tryptophan (8)
Uracil (8)
Cytosine (8)
Adenosine (8)
L-Phenylalanine (8)
Xanthosine (7)
Tetradecanedioic acid (7)
Hypoxanthine (7)
Creatinine (7)
L-Arginine (7)
L-Methionine (7)
L-Glutamine (7)
Cytidine (7)
Argininosuccinic acid (6)
Indole (6)
Fumaric acid (6)
Citric acid (6)
Spermidine (6)
Riboflavin (6)
Raffinose (6)
Leu-Val (6)

First Public Date

2026 (64)
2014 (63)
2025 (55)
2024 (42)
2021 (38)
2023 (36)
2022 (34)
2020 (21)
2017 (20)
2015 (19)
2019 (15)
2018 (7)
2016 (5)
2013 (5)
2011 (1)

Study status

Recruiting (1)

Lab affiliation

Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (10)
Northwest University (7)
Department of Laboratory Medicine and Pathology Mayo Clinic, Rochester, Minnesota 55905 United States (7)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (7)
Utrecht University (7)
Institutes of Biomedical Sciences and department of Chemistry, Fudan University, Shanghai, China (6)
Department of Biochemistry, Sapporo Medical University School of Medicine (6)
Center for Biologics Evaluation and Research (CBER), U.S. Food and Drug Administration (FDA) (5)
Department of Cellular and Molecular Medicine, University of Copenhagen (4)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (4)
West China Hospital, Sichuan University (4)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, United States (4)
1School of Natural Sciences, Macquarie University, Sydney, NSW, Australia 2Institute for Glyco-core Research (iGCORE), Nagoya University, Aichi, Japan (3)
Yazhouwan National Laboratory, Sanya 572024, China (3)
Research Institute for Microbial Diseases, Osaka University (3)
Copenhagen Center for Glycomics, University of Copenhagen (3)
Department of Chemistry, Stanford University (3)
RIMD, Osaka university,Japan (3)
Department of Microbiology and Immunology, University of Melbourne, Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia (3)
Mayo Clinic (3)
Department of Chemistry, University of Washington, Seattle, WA, USA (3)
Yale University Department of Chemistry (3)
Texas Tech University (3)
Yale University (3)
Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, N0. 1037 Luoyudong Road, Hongshan District, Wuhan 430074 (3)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (3)
School of Pharmacy, UW-Madison (2)
Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf, Hamburg, Germany (2)
Boston University Medical Campus 670 Albany St., Rm. 509 Boston, MA 02118 USA (2)
Reserch Institute for Microbial Diseases, Osaka University (2)

Keyword

Bi-Sialidase (1)
Anti-Tumor (1)
E-602 (1)
Cemiplimab (1)

IsPrivate

False (1)

Classification

bacteria (28)
fungi (1)
viruses (1)

Modification

15.994915 (2)
Not available (2)
0.984016 (1)
-18.010565 (1)
42.010565 (1)
57.021464 (1)

Study type

Transcription profiling by array (268)
RNA-seq of coding RNA (38)
Proteomic profiling by array (19)
Unknown experiment type (12)
Comparative genomic hybridization by array (11)
Other (2)
DNA-seq (2)
RNA-seq of total RNA (2)
High-throughput sequencing (1)
Human - One-color microarray (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
ChIP-seq (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)
Interventional (1)

Release Date

2021 (723)
2022 (667)
2020 (643)
2025 (599)
2023 (598)
2024 (557)
2018 (492)
2019 (460)
2017 (416)
2016 (404)
2015 (386)
2014 (289)
2013 (277)
2011 (253)
2012 (225)
2010 (199)
2009 (148)
2008 (119)
2026 (82)
2007 (67)
2006 (38)
2005 (27)
2004 (23)
2001 (13)
2002 (10)
2003 (9)
1999 (7)
2000 (6)
1998 (2)
1997 (1)

Location

United States (1)

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Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level (Metabolite profiling)

Medulloblastomas (MBs) are malignant pediatric brain tumors that are molecularly and clinically very heterogenous. The application of omics technologies - mainly studying nucleic acids - has significantly improved MB classification and stratification, but treatment options are still unsatisfactor...

2024-05-30 | MTBLS9830 | MetaboLights

Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level (Amino acid profiling)

2024-05-30 | MTBLS9836 | MetaboLights

Glycan effect on Saccharolytic Human Distal Gut Symbiont, B. thetaiotaomicron

This SuperSeries is composed of the following subset Series: GSE11944: Mucosal Glycan Foraging Enhances the Fitness and Transmission of a Saccharolytic Human Distal Gut Symbiont GSE11953: Mucosal Glycan Foraging Enhances the Fitness and Transmission of a Saccharolytic Human Distal Gut Symbiont: ECF ...

ORGANISM(S): Bacteroides thetaiotaomicron

2008-11-20 | E-GEOD-11980 | biostudies-arrayexpress

N-glycosylation Profiling of Colorectal Cancer Cell Lines Reveals Association of Fucosylation with Differentiation and Caudal Type Homebox 1 (CDX1)/Villin mRNA Expression

Various cancers such as colorectal cancer (CRC) are associated with alterations in protein glycosylation. CRC cell lines are frequently used to study these (glyco)biological changes and their mechanisms. However, differences between CRC cell lines with regard to their glycosylation have hitherto bee...

2017-02-03 | MTBLS227 | MetaboLights

Baseline serum anti-glycan antibodies of 113 subjects in a clinical trial of PROSTVAC-VF, a therapeutic cancer vaccine [Validation IgG 1:50]

Purpose: There is evidence that therapeutic cancer vaccines can lengthen survival for some cancer patients, but responses vary widely from one person to another. Methods to predict clinical outcomes will advance the field and provide new insights into critical determinants of in vivo efficacy. Thi...

ORGANISM(S): Homo sapiens

2013-04-01 | E-GEOD-42163 | biostudies-arrayexpress

Baseline serum anti-glycan antibodies of 113 subjects in a clinical trial of PROSTVAC-VF, a therapeutic cancer vaccine [Validation Total Ig 1:50]

ORGANISM(S): Homo sapiens

2013-04-01 | E-GEOD-42176 | biostudies-arrayexpress

Baseline serum anti-glycan antibodies of 113 subjects in a clinical trial of PROSTVAC-VF, a therapeutic cancer vaccine [Validation Total Ig 1:200]

ORGANISM(S): Homo sapiens

2013-04-01 | E-GEOD-42179 | biostudies-arrayexpress

Baseline serum anti-glycan antibodies of 113 subjects in a clinical trial of PROSTVAC-VF, a therapeutic cancer vaccine [Validation IgM 1:50]

ORGANISM(S): Homo sapiens

2013-04-01 | E-GEOD-42175 | biostudies-arrayexpress

Baseline serum anti-glycan antibodies of 28 subjects in a clinical trial of PROSTVAC-VF, a therapeutic cancer vaccine [Training IgG 1:50]