Gomez D D - OmicsDI

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Unknown (7094)
Transcriptomics (132)
Proteomics (104)
Genomics (73)
Metabolomics (18)
Models (1)

Organisms

Homo sapiens (109)
Schizosaccharomyces pombe (81)
Human immunodeficiency virus 1 (81)
Oryza sativa Indica Group (81)
Mus musculus (39)
Arabidopsis thaliana (14)
Rattus norvegicus (6)
Danio rerio (5)
Mycobacterium tuberculosis (3)
Saccharomyces cerevisiae (3)
Aspergillus fumigatus (2)
Plasmodium falciparum (2)
Sus scrofa (2)
Leishmania major strain Friedlin (1)
Methyloversatilis universalis FAM5 (1)
Urochloa decumbens (1)
Myxococcus xanthus (1)
Macaca mulatta (1)
Mycobacterium tuberculosis CDC1551 (1)
Medicago truncatula (1)
Listeria monocytogenes (1)
Citrus sinensis (1)
Oryza sativa (1)
Anopheles gambiae (1)
Aedes aegypti (1)
Mesocricetus auratus (1)
Oncorhynchus mykiss (1)
Bos taurus (1)
Canis lupus familiaris (1)
cellular organisms (1)

Organisms

Spea multiplicata (3)
Scaphiopus couchii (3)
Mus musculus (1)

Repository

biostudies-arrayexpress (148)
pride (81)
EGA (48)
MetaboLights (16)
MassIVE (14)
ENA (9)
jPOST (6)
GNPS (2)
PAXDB (2)
BioModels (1)
PanoramaPublic (1)

Tissue

Cell culture (9)
Epithelial cell (6)
T cell (6)
Blood plasma (4)
Lymph node (3)
Brain (3)
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Permanent cell line cell (3)
Spinal ganglion (2)
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Urine (2)
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Blood (2)
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Somatosensory cortex (1)
Peripheral nerve (1)
Pericyte cell (1)
Pancreatic endocrine cell (1)
Pancreatic acinus (1)

Disease

Breast cancer (4)
Alzheimer's disease (3)
Neuroblastoma (2)
Cervix carcinoma (2)
Gray platelet syndrome (2)
Severe malaria (1)
Uninfected (1)
Cytochrome-c oxidase deficiency disease (1)
IgA glomerulonephritis (1)
Severe acute respiratory syndrome (1)
Brain glioblastoma multiforme (1)
Charcot-Marie-Tooth disease (1)
Pancreatic cancer (1)
Cervical cancer (1)
Amyotrophic lateral sclerosis (1)
Kidney cancer (1)
Rheumatoid arthritis (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (81)
Shotgun proteomics (42)
Bottom-up proteomics (19)
Affinity purification coupled with mass spectrometry proteomics (16)
Data-dependent acquisition (10)
Mass spectrometry (9)
NMR spectroscopy (4)
Data-independent acquisition (4)
Gel-based experiment (3)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Illumina HiSeq 2000 (2)
Mass spectrometry assay (2)
All-ion fragmentation (2)
DiaPASEF (2)
HDMSE (2)
SWATH MS (2)
Top-down proteomics (2)
ILLUMINA, Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)
Immunopeptidomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (5)
Liquid Chromatography MS - negative - reverse phase (5)
Orbitrap Fusion Lumos (4)
Illumina HiSeq 2000 (3)
NextSeq 500 (3)
Impact (3)
Bruker (3)
Thermo Scientific Orbitrap Lumos (2)
Q Exactive (2)
Gas Chromatography MS - positive (2)
Axon 4000B scanner (1)
ScanArray Lite [PerkinElmer] (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
LTQ Orbitrap (1)
LTQ FT (1)
MaXis (1)
Orbitrap Fusion (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
Nuclear Magnetic Resonance (NMR) - - - Varian (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Direct infusion MS - positive (1)
Nuclear Magnetic Resonance (NMR) - - - Bruker (1)
LTQ Orbitrap Velos (Thermo Scientific) (1)
TripleTOF 5600 (AB Sciex) (1)
Liquid Chromatography MS - (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2012 (27)
2014 (24)
2015 (20)
2011 (18)
2023 (18)
2022 (17)
2021 (16)
2024 (14)
2016 (14)
2025 (13)
2013 (13)
2019 (12)
2020 (11)
2018 (11)
2026 (11)
2010 (9)
2017 (8)
2009 (7)
2008 (5)
2007 (3)

UNIPROT ID/AC

PAX5_MOUSE (2)
CD37_MOUSE (2)
LEF1_MOUSE (2)
PAMR1_MOUSE (2)
AGRG1_MOUSE (2)
GFRA2_MOUSE (2)
IGLL1_MOUSE (2)
CD79A_MOUSE (2)
COE1_MOUSE (2)
NKX32_MOUSE (2)
LRMP_MOUSE (2)
HIRP3_MOUSE (2)
RUNX1_MOUSE (2)
UHRF1_MOUSE (2)
CDCA7_MOUSE (2)
IMP3_MOUSE (2)
HELLS_MOUSE (2)
CD79B_MOUSE (2)
T2EB_MOUSE (2)
BTK_MOUSE (2)
TOPK_MOUSE (2)
P05198 (1)
O75807 (1)
P35638 (1)
P18848 (1)
Q99941 (1)
P17861 (1)
O75460 (1)
Q9NZJ5 (1)
P18850 (1)

CHEBI ID

CHEBI:18132 (7)
CHEBI:18237 (7)
CHEBI:24898 (7)
CHEBI:15428 (7)
CHEBI:78320 (7)
CHEBI:15354 (7)
CHEBI:30769 (7)
CHEBI:25094 (6)
CHEBI:22660 (6)
CHEBI:27570 (6)
CHEBI:16811 (6)
CHEBI:28300 (6)
CHEBI:25017 (6)
CHEBI:28044 (6)
CHEBI:27266 (6)
CHEBI:15891 (6)
CHEBI:16449 (6)
CHEBI:30915 (6)
CHEBI:17368 (6)
CHEBI:17822 (5)
CHEBI:26271 (5)
CHEBI:22653 (5)
CHEBI:18186 (5)
CHEBI:26986 (5)
CHEBI:16870 (5)
CHEBI:15741 (5)
CHEBI:17821 (5)
CHEBI:16335 (5)
CHEBI:16704 (5)
CHEBI:15366 (5)

Metabolite Name

Choline (5)
Formate (4)
AMP (4)
Citrate (4)
Succinate (4)
2-Oxoglutarate (4)
Lactate (4)
Isoleucine (4)
Glutamine (4)
Creatine (4)
3-Hydroxybutyrate (3)
O-Phosphocholine (3)
3-Hydroxyisovalerate (3)
Isobutyrate (3)
Acetate (3)
UDP-glucose (3)
Sn-Glycero-3-phosphocholine (3)
Histidine (3)
Glutamate (3)
Leucine (3)
Glycine (3)
Uridine (3)
NAD+ (3)
Malate (3)
Hypoxanthine (3)
Glutamate (3)
Fumarate (3)
ATP (3)
Allantoin (3)
Pyruvate (3)

First Public Date

2025 (5)
2026 (3)
2020 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Systems Biology Ireland, University College Dublin (6)
Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, UK, DD1 5EH, UK (3)
Forschungszentrum Juelich GmbH ZEA-3 Analytics Wilhelm-Johnen-Str D-52425 Juelich Germany (3)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain (2)
Institute for Immunology, University Medical Center Mainz. Langenbeckstr. 1 55131 Mainz, Germany (1)
Centre of Excellence in New Target Discovery (CENTD), Butantan Institute, Sao Paulo, Brazil. (1)
Sunitha Nagrath Lab, 2800 Plymouth Rd, NCRC Building 10, Ann Arbor, MI- 48109 (1)
Head of the Division of Pharmacology & Toxicology Department of Pharmaceutical Sciences University of Vienna (1)
Systems Biology of Pain,Division of Pharmacology & Toxicology, Department of Pharmaceutical Sciences, University of Vienna (1)
Department of Clinical Chemistry and Transfusion Medicine at Institute of Biomedicine, SU Sahlgrenska 413 45 Gothenburg, Sweden (1)
Department of Clinical Neurosciences, School of Clinical Medicine, University of Cambridge, Cambridge, UK (1)
Head of Systems Biology of Pain Department of Pharmacology & Toxicology University of Vienna, Vienna, Austria (1)
University Medical Center Mainz, Germany, Institute for Immunology (1)
University of Illinois Chicago, Department of Physiology and Biophysics (1)
Department of Biomedicine, Aarhus University, Aarhus, Denmark (1)
Center for Reproductive Evolution, Department of Biology, Syracuse University, United States of America (1)
Division of Cell Signalling & Immunology, University of Dundee (1)
Max Planck Institute of Immunobiology and Epigenetics, Freiburg, Germany (1)
UPF/CRG Proteomics Unit (1)
Laboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U1163, Necker Hospital for Sick Children, Paris, France; University of Paris, Imagine Institute, Paris, France; St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY, USA; Department of Pediatrics, Necker Hospital for Sick Children, AP-HP, Paris, France; Howard Hughes Medical Institute, New York, NY, USA (1)
Universidad de Málaga, Facultad de Medicina, Departamento de Radiología y Medicina Física, Málaga, España (1)
Metabolomics and Proteomics Core, Helmholtz Zentrum München, German Research Center for Environmental Health, Munich, Germany (1)
Stoller Biomarker Discovery Centre, University of Manchester, United kingdom (1)
Professor Department of Molecular and Cellular Biology Medical Institute of Bioregulation Japan (1)
Cambridge Stem Cell Institute, Jeffrey Cheah Biomedical Centre, University of Cambridge, Cambridge, UK (1)
Grupo de Neurociencias de Antioquia, SIU, Universidad de Antioquia, Colombia. Instituto de Biología, Facultad de Ciencias Exactas y Naturales, Universidad de Antioquia, Colombia. (1)
Clinical Proteomics (1)
Research Director, Professor Protein Signaling Program Novo Nordisk Foundation Center for Protein Research University of Copenhagen (1)
1 Proteomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands. 2 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht Institute for Pharmaceutical Sciences, Utrecht University and Netherlands Proteomics Centre, Utrecht, The Netherlands. (1)
Division of Pharmacology and Toxicology, Department of Pharmaceutical Sciences, University of Vienna, 1090 Vienna, Austria (1)

IsPrivate

False (1)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)

Study type

Transcription profiling by array (91)
RNA-seq of coding RNA (17)
ChIP-seq (14)
Other (8)
Methylation profiling by array (5)
RNA-seq of coding RNA from single cells (3)
ChIP-chip by array (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA from single cells (1)
Human - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
MicroRNA profiling by array (1)

Release Date

2022 (958)
2023 (889)
2021 (872)
2025 (852)
2024 (805)
2020 (570)
2019 (438)
2018 (345)
2017 (277)
2016 (241)
2015 (206)
2014 (178)
2026 (123)
2012 (122)
2013 (111)
2011 (85)
2010 (54)
2009 (41)
2008 (23)
2007 (14)
2006 (10)
2003 (5)
2000 (5)
2005 (4)
2004 (4)
2002 (3)
2001 (3)
1998 (2)
1999 (1)
1997 (1)

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Seasonal Differences of 25-Hydroxyvitamin D Concentrations in Children and Adolescents from Mexico City and Metropolitan Area.

Not available

S-EPMC12011372 | biostudies-literature

Fasting upregulates the monocarboxylate transporter Mct1 at the rat blood-brain barrier through Ppar d activation

Fasting is increasingly recognized as a potential therapeutic intervention in the field of neurology and psychiatry. However, its impact upon the blood-brain barrier (BBB), which strictly regulates the cerebral uptake of a wide range of endogenous compounds and drugs, is unknown. In this study we us...

ORGANISM(S): Cellular Organisms

2024-08-15 | PXD044587 | JPOST Repository

Factors associated with D-dimer levels in HIV-infected individuals.

Not available

S-EPMC3953205 | biostudies-literature

D-series Resolvins activate Phospholipase D in phagocytes during inflammation and resolution.

Not available

S-EPMC7686130 | biostudies-literature

Calcifediol is superior to cholecalciferol in improving vitamin D status in postmenopausal women: a randomized trial.

Not available

S-EPMC8597097 | biostudies-literature

Factors Associated with Serum Vitamin D Metabolites and Vitamin D Metabolite Ratios in Premenopausal Women.

Not available

S-EPMC8621214 | biostudies-literature

Use of the Puccinia sorghi haustorial transcriptome to identify and characterize AvrRp1-D recognized by the maize Rp1-D resistance protein.

Not available

S-EPMC11578463 | biostudies-literature

Gomez-Deza et al 2024 DLK DRP1 phosphoproteomics

Mass spectrometry of GST-tagged DRP1 expressed in HEK cells either alone or co-expressed with WT DLK or DLK S302A (Kinase dead mutant). ("D" DRP1 only; "D-D" DRP1 + DLK WT; "D-S" DRP1 + DLK S302A)

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2024-10-21 | MSV000096146 | MassIVE

Vitamin D Receptor (VDR) Gene Polymorphisms Modify the Response to Vitamin D Supplementation: A Systematic Review and Meta-Analysis.

Not available

S-EPMC8780067 | biostudies-literature

Effects of D-Tagatose on Cariogenic Risk: A Systematic Review of Randomized Clinical Trials.

Not available

S-EPMC11767683 | biostudies-literature

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