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TranscriptomicsTranscription profiling of Wheat-Phytase transgenic plants vs a non-transgenic control line at three different developmental stages of the seed
A transgenic wheat line was compared for gene expression patterns to a non-transgenic control line at three different developmental stages of the seed. The three successive developmental stages were also compared for each of the two lines. Thus, a factorial experiment with three developmental stages...
ORGANISM(S): Triticum aestivum 
2005-07-01 | E-MEXP-368 | biostudies-arrayexpress
TranscriptomicsOn the relevance of technical variation due to building pools in microarray experiments [Honey bee]
The objective of the study was to assess the technical error due to blending of individual samples into pools in different experimental data sets. The blending error variance component corresponds to random effects for inaccuracies, which were modeled on the logarithmic scale of normalized gene expr...
ORGANISM(S): Apis mellifera 
2015-09-11 | E-GEOD-72943 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis mkk1, mkk2 and mkk1/2 knockout treated with the saliicylic acid analog BTH
Gene Expression profiling of the Arabidopsis thaliana MAP Kinase Kinases 1 (mkk1), MAP Kinase Kinases 2 (mkk2) knockout mutants and the double mutant mkk1/mkk2 before and 24 hours after treatment with the salicylic acid analog BTH, was measured by hybridisation to an Affymetrix ATH1 GeneChip. Experi...
ORGANISM(S): Arabidopsis thaliana 
2008-06-11 | E-GEOD-10646 | biostudies-arrayexpress
TranscriptomicsTranscriptomic profiling of boars with high and low skatole levels
Skatole is one of the compounds causing boar taint in meat of uncastrated male pigs. This study focuses on differences in gene expression of 50 Danish Landrace boars with high and low skatole levels. The animals were divided into 2 groups based on the skatole measurements, with animals having a skat...
ORGANISM(S): Sus scrofa 
2015-06-15 | E-GEOD-29974 | biostudies-arrayexpress
ProteomicsDownregulation of antigen presentation-associated pathway proteins in poor outcome triple-negative breast cancer patient tumors
Triple-negative breast cancer (TNBC) is a heterogeneous subtype with varying disease outcomes. Tumor infiltrating lymphocytes (TILs) are frequent in TNBC and have been shown to correlate with outcome, suggesting an immunogenic component in this subtype. However, other factors, intrinsic to the cance...
ORGANISM(S): Homo sapiens (Human) 
2018-10-26 | PXD005544 | Pride
Mhc class i antigen presentation pathway Proteomics Major histocompatibility complex Mass spectrometry Basal-like breast cancer Biomarker Triple-negative breast cancer Formalin-fixed paraffin embedded 
TranscriptomicsLong oligo- and cDNA-based microarray gene expression in nine porcine muscle tissues using a common reference design
The introduction of long oligonucleotide-based probes has led to many comparative studies of these two platforms in mammals, but remains to be performed for pig. Further, the characteristics of global gene expression in diverse porcine muscle tissues have not been yet been fully established. This is...
ORGANISM(S): Sus scrofa 
2012-10-30 | E-GEOD-10597 | biostudies-arrayexpress
UnknownGenetic markers of toxicity from capecitabine and other fluorouracil-based regimens: investigation in the QUASAR2 study, systematic review, and meta-analysis.
Not available
S-EPMC4879695 | biostudies-literature
TranscriptomicsGene expression profiles in liver of pigs with extreme high and low levels of androstenone.
ABSTRACT: BACKGROUND: Boar taint is the unpleasant odour and flavour of the meat of uncastrated male pigs that is primarily caused by high levels of androstenone and skatole in adipose tissue. Androstenone is a steroid and its levels are mainly genetically determined. Studies on androstenone metabol...
ORGANISM(S): Sus scrofa 
2008-08-17 | E-GEOD-11073 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of autumn senescence in populus Leaves
Gene expression profiling in leaves of a free-growing aspen tree (Populus tremula) in Umea in northern Sweden during natural autumn senescence (from August 17 to September 21).
ORGANISM(S): Populus tremula 
2004-03-09 | E-MEXP-93 | biostudies-arrayexpress
TranscriptomicsHeart-muscle expression ratios in pig obtained by 454-sequencing, iTRAQ-based proteomics and cDNA microarrays
The recent development within high-throughput technologies for expression profiling has allowed for parallel analysis of transcriptomes and proteomes in biological systems such as comparative analysis of transcript and protein levels of tissue regulated genes. Until now, such studies of have only in...
ORGANISM(S): Sus scrofa 
2009-01-22 | E-GEOD-10122 | biostudies-arrayexpress
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