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TranscriptomicsNext Generation Sequencing Facilitates Quantitative Analysis of Wild Type and Nrl-/- Retinal Transcriptomes
Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare NGS-derived retinal transcriptome profiling (RNA-seq) to microarray and quantitative reverse transcription polymerase chain reaction (qRT–PCR) methods and ...
ORGANISM(S): Mus musculus 
2011-10-25 | E-GEOD-33141 | biostudies-arrayexpress
UnknownDiscovering Native Ant Species with the Potential to Suppress Red Imported Fire Ants.
Not available
S-EPMC11354274 | biostudies-literature
TranscriptomicsAnalysis of the effect of constitutive expression of AtGLK1 and AtGLK2 on the transcriptome of tomato fruits
Comparison of gene expression, in immature green fruit (15dpa), between transgenic tomato (S. lycopersicum cv. '.T63') lines expressing constitutively the transcription factors AtGLK1 (At2g20570) or AtGLK2 (At5g44190) regulated by the CaMV35S (p35S) to 'T63' lines expressing only the CaMV35S promote...
ORGANISM(S): Lycopersicon esculentum 
2012-06-29 | E-MEXP-3652 | biostudies-arrayexpress
TranscriptomicsCross-species Detection in Barley1 GeneChip Array
This study was conducted to evaluate the efficiency of cross-species detection in Barley1 GeneChip array. We hybridized cRNA derived from first leaves of barley green seedlings (as a control), as well as the same stage of seedling leaf from representative genotypes of wheat, oat, rice, maize, and s...
ORGANISM(S): Triticum aestivum 
2011-11-22 | E-GEOD-33391 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling using microarrays to elucidate the effects of partial whiB1 gene deletion in Mycobacterium tuberculosis H37Rv
DNA microarray analysis was performed on RNA from a strain of Mycobacterium tuberculosis H37Rv in which the essential whiB1 gene was deleted from the chromosome but partially complemented by a wild type allele on a plasmid, compared to RNA from H37Rv wild type containing the same plasmid.
ORGANISM(S): Mycobacterium tuberculosis 
2017-12-22 | E-MTAB-5814 | biostudies-arrayexpress
UnknownNext-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes.
Not available
S-EPMC3233386 | biostudies-literature
UnknownLocal variations in L/M ratio influence the detection and color naming of small spots.
Not available
S-EPMC12514989 | biostudies-literature
MetabolomicsOnline Headspace-Solid Phase Microextraction-Gas Chromatography-Mass Spectrometry-based untargeted volatile metabolomics for studying emerging complex biopesticides: A proof of concept
This work introduces a novel online Headspace-Solid Phase Microextraction-Gas Chromatography-Mass Spectrometry-based untargeted metabolomics approach, suggested as an alternative tool to study the environmental fate of volatile xenometabolites in emerging complex biopesticides, e.g. the Myrica gale ...
2021-01-26 | MTBLS2026 | MetaboLights
TranscriptomicsGenome-wide DNA methylation study of hip and knee osteoarthritic and healthy cartilage reveals embryonic organ and skeletal system morphogenesis as major pathways involved in osteoarthritis
Cartilage samples were collected from hip or knee joint replacement patients either due to primary OA or hip fractures as controls. DNA was extracted from the collected cartilage and assayed by Illumina Infinium HumanMethylation450 ‎BeadChip array, which allows for the analysis of >480,000 CpG sit...
ORGANISM(S): Homo sapiens 
2016-07-01 | E-GEOD-73626 | biostudies-arrayexpress
TranscriptomicsTranscriptome analysis of Aggregatibacter actinomycetemcomitans serotype b strains of JP2 and non-JP2 genotypes using a pan-genome microarray
To characterize the differences in pattern of gene expression between JP2 and non-JP2 genotypes of A. actinomycetemcomitans. Transcriptome analysis of 3 strains of JP2 and 2 strains of non-JP2 genotypes of A. actinomycetemcomitans was performed Transcripome of three strains of JP2 genotype (HK1651, ...
ORGANISM(S): Aggregatibacter actinomycetemcomitans 
2012-09-28 | E-GEOD-38943 | biostudies-arrayexpress
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