Griffin S S - OmicsDI

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Unknown (2237)
Transcriptomics (453)
Genomics (94)
Metabolomics (85)
Proteomics (66)

Organisms

Homo sapiens (155)
Mus musculus (107)
Arabidopsis thaliana (32)
Zea mays (28)
Rattus norvegicus (13)
Medicago truncatula (12)
Saccharomyces cerevisiae (12)
Sus scrofa (10)
Solanum lycopersicum (9)
Triticum aestivum (9)
Streptomyces venezuelae (7)
Glycine max (7)
Oryza sativa (6)
Anopheles gambiae (6)
Gallus gallus (5)
Escherichia coli str. K-12 substr. MG1655 (5)
Oryza sativa Japonica Group (4)
Danio rerio (4)
Sycon ciliatum (3)
Oryza sativa Indica Group (3)
Anopheles coluzzii (3)
Manihot esculenta (2)
Gossypium hirsutum (2)
Selaginella moellendorffii (2)
Coprinopsis cinerea (2)
Fragilariopsis cylindrus (2)
Lolium perenne (2)
Picea abies (2)
Schistosoma mansoni (2)
Populus trichocarpa (2)

Organisms

Mannheimia varigena (1)

Repository

biostudies-arrayexpress (534)
MetaboLights (85)
pride (62)
EGA (12)
MassIVE (3)
PanoramaPublic (1)
ENA (1)

Tissue

Cell culture (10)
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Acute leukemia (1)
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Inflammatory bowel disease (1)
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Technology Type

Mass spectrometry (67)
Mass Spectrometry (62)
Shotgun proteomics (38)
NMR spectroscopy (13)
Data-dependent acquisition (9)
Bottom-up proteomics (7)
Mass spectrometry assay (6)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Affinity purification coupled with mass spectrometry proteomics (3)
MSE (2)
Gel-based experiment (2)
SRM/MRM (2)
Top-down proteomics (2)
Illumina Genome Analyzer II (1)
NMR spectroscopy assay (1)
Metaproteomics (1)
Proteogenomics (1)
All-ion fragmentation (1)
HDMSE (1)
Data-independent acquisition (1)
SWATH MS (1)

Instrument Platform

Illumina HiSeq 2000 (164)
Illumina HiSeq 2500 (58)
Illumina HiSeq 4000 (25)
Illumina HiSeq 1500 (16)
Illumina NovaSeq 6000 (12)
Illumina Genome Analyzer IIx (11)
Illumina Genome Analyzer II (7)
Illumina HiSeq 1000 (7)
Illumina HiSeq 3000 (7)
NextSeq 2000 (6)
NextSeq 500 (4)
Illumina NovaSeq X (3)
Illumina MiSeq (3)
Illumina HiScanSQ (2)
Qsep400 (1)
Qubit fluorometer (1)
NEBNext rRNA Depletion Kit v2 and NEBNext Ultra II Directional RNA Library Prep Kit Illumina kits (1)
KAPA EvoPrep Kit (1)
Quiagen Mini prep kit (1)
Chromium 10X Controller (1)
10x Chromium Controller (1)
Axon-GenePix 4100A (1)
10X Chromium Controller (1)
Covaris S2 (1)
Covaris, NEBNext Ultra II DNA library prep kit (1)
Intel Xeon E5-2660) HP ProLiant SL230s Gen8 (1)
Applikon (1)
Illumina HiSeq (1)
Illumina HiSeq2000 (1)
Illumina HiSeq X (1)

Publication Date

2015 (85)
2014 (75)
2016 (72)
2013 (56)
2021 (50)
2020 (43)
2012 (39)
2022 (37)
2018 (32)
2019 (31)
2011 (27)
2025 (25)
2026 (23)
2023 (23)
2017 (22)
2024 (21)
2010 (8)
2009 (7)
2008 (5)
2007 (3)
2005 (1)

CHEBI ID

CHEBI:15741 (28)
CHEBI:15428 (26)
CHEBI:28044 (25)
CHEBI:27266 (24)
CHEBI:30769 (23)
CHEBI:6650 (23)
CHEBI:25017 (22)
CHEBI:26271 (21)
CHEBI:16449 (20)
CHEBI:24898 (20)
CHEBI:18186 (19)
CHEBI:16335 (18)
CHEBI:15891 (18)
CHEBI:27897 (18)
CHEBI:18237 (18)
CHEBI:28300 (17)
CHEBI:17822 (17)
CHEBI:15354 (17)
CHEBI:16704 (16)
CHEBI:17750 (16)
CHEBI:26986 (15)
CHEBI:16811 (15)
CHEBI:16737 (15)
CHEBI:22660 (14)
CHEBI:17234 (14)
CHEBI:16919 (14)
CHEBI:7916 (14)
CHEBI:17596 (14)
CHEBI:17568 (13)
CHEBI:15756 (13)

Metabolite Name

Glycine (12)
Valine (11)
Alanine (11)
Valine (10)
Creatinine (10)
Proline (9)
Leucine (9)
Phenylalanine (9)
Isoleucine (9)
Succinic acid (9)
Glutamine (8)
Tyrosine (8)
Choline (8)
Phenylalanine (8)
Glucose (8)
Taurine (8)
Citric acid (8)
Threonine (7)
Glycine (7)
Tyrosine (7)
Serine (7)
Isoleucine (7)
Tryptophan (7)
Creatine (7)
Malic acid (7)
Uracil (6)
Choline (6)
Lactate (6)
Glucose (6)
Citrulline (6)

First Public Date

2017 (1)

Study type

RNA-seq of coding RNA (300)
ChIP-seq (55)
RNA-seq of non coding RNA (47)
Transcription profiling by array (33)
DNA-seq (13)
Methylation profiling by high throughput sequencing (13)
RNA-seq of total RNA (12)
Cell line - High-throughput sequencing (10)
High-throughput sequencing (9)
RNA-seq of coding RNA from single cells (8)
Animal - High-throughput sequencing (5)
Bisulfite-seq (5)
Plant - High-throughput sequencing (4)
Other (4)
Human - High-throughput sequencing (3)
Unknown experiment type (2)
MicroRNA profiling by high throughput sequencing (2)
4C (2)
Transcription profiling by SAGE (1)
MNase-seq (1)
Transcription profiling by tiling array (1)
Comparative genomic hybridization by array (1)
RIP-seq (1)
CUT&RUN (1)
Genotyping by high throughput sequencing (1)

Release Date

2022 (252)
2023 (249)
2021 (243)
2025 (234)
2024 (234)
2020 (204)
2015 (184)
2016 (179)
2019 (171)
2014 (143)
2018 (138)
2017 (121)
2013 (111)
2012 (86)
2011 (62)
2010 (51)
2026 (37)
2009 (31)
2008 (17)
2007 (7)
2006 (5)
2004 (4)
2003 (2)
2000 (2)
2005 (1)
2002 (1)
2001 (1)
1987 (1)

Lab affiliation

Department of Molecular Medicine The Scripps Research Institute (3)
BCMP, Harvard Medical School, Boston, USA Cancer Biology, Dana-Farber Cancer Institute, Boston, USA (2)
Maynooth University, Ireland (2)
Professor, Molecular Medicine Scientific Director UF Scripps Biomedical Research University of Florida (2)
Department of Molecular Medicine, The Scripps Research Institute, Jupiter, FL 33458, USA. (2)
Professor, Department of Laboratory Medicine &Pathology Adjunct Professor, Department of Obstetrics, Gynecology& Women's Health Director, Ovarian Cancer Early Detection Program University of Minnesota Minneapolis, Minnesota, USA (1)
The Scripps Research Insitute Department of Molecular Medicine (1)
School of Pharmacy,Lanzhou University (1)
Department of Clinical Neurosciences, School of Clinical Medicine, University of Cambridge, Cambridge, UK (1)
Department of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory (lab head) (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) (1)
Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, USA (1)
Professor, Department of Cellular and Molecular Pharmacology (1)
Pulmonary, Allergy, Critical Care, and Sleep Division Medicine Department University of Minnesota - TC Minneapolis, MN (1)
Developmental and Cell Biology University of California, Irvine Irvine, California, USA (1)
Pulmonary, Critical Care, and Sleep Medicine Veterans Affairs Medical Center, Minneapolis, MN Pulmonary, Critical Care, and Sleep Medicine University of Minnesota, Minneapolis, MN (1)
Professor, Molecular Medicine Scientific Director, The Wertheim UF Scripps Institute (lab head) (1)
Professor, Molecular Medicine & Scientific Director, The Wertheim UF Scripps Institute (1)
University of Arkansas for Medical Sciences, Department of Biochemistry and Molecular Biology (1)
Science for Life Laboratory, Department of Oncology-Pathology, Karolinska Institutet, Stockholm, Sweden (1)
Department of Laboratory Medicine and Pathology, University of Minnesota (1)
Pratik Jagtap, Managing Director, Center for Mass Spectrometry and Proteomics, 43 Gortner Laboratory, 1479 Gortner Avenue, St. Paul, MN 55108 Phone: 612-624-9275 (1)
Associate Professor, BMBB, University of Minnesota, Minneapolis, MN (1)
Department of Molecular Medicine The Scripps Research Institute (1)
Cardiovascular Biology Research Program, Oklahoma Medical Research Foundation, US (1)
Professor, Molecular Medicine, Wertheim UF Scripps, USA (1)
Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota (1)
Chemical Proteomics core facility Department of Medical Biochemistry and Biophysics (MBB) Karolinska Institutet, Sweden (1)
Tufts University School of Medicine (1)
Fleury Group (1)

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xref:EuropePMC:PMC6386567 (1)

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Griffin: A Tool for Symbolic Inference of Synchronous Boolean Molecular Networks.

Not available

S-EPMC5845696 | biostudies-literature

Targeting anticoagulant protein S to improve hemostasis in hemophilia.

Not available

S-EPMC5865230 | biostudies-literature

The thrombin-sensitive region of protein S mediates phospholipid-dependent interaction with factor Xa.

Not available

S-EPMC2586267 | biostudies-literature

Cellular and gene expression patterns associated with root bifurcation in Selaginella

To identify possible molecular mechanisms with a role in root branching initiation in S. moellendorffii, we employed the developmental root branching assay for an RNA-seq experiment and sampled root tips on each day from 0 to 5 d after the first branching (time point 0), in which 300 µm apical parts...

ORGANISM(S): Selaginella moellendorffii

2022-02-12 | E-MTAB-11402 | biostudies-arrayexpress

An economic evaluation of eptinezumab for the preventive treatment of migraine in the UK, with consideration for natural history and work productivity.

Not available

S-EPMC11027549 | biostudies-literature

Generation and phenotypic analysis of protein S-deficient mice.

Not available

S-EPMC2745849 | biostudies-literature

Untargeted metabolomics profiling reveals exercise intensity-dependent alterations in Thoroughbred racehorses’ plasma after routine conditioning sessions

Thoroughbred (TB) racehorses are subjected to rigorous conditioning programs involving exercise sessions of various types, distances and intensities. These programs aim to optimize both their physical and mental capabilities, which are essential to achieve maximal performance. Conventional invest...

2024-01-16 | MTBLS8285 | MetaboLights

Daratumumab in transplant-eligible patients with newly diagnosed multiple myeloma: final analysis of clinically relevant subgroups in GRIFFIN.

Not available

S-EPMC11231363 | biostudies-literature

Metabolomics of the interaction between PPAR-alpha and age in the PPAR-alpha-null mouse (NMR assay)

Regulation between the fed and fasted state in mammals is partially controlled by peroxisome proliferator activated receptor-alpha (PPAR-alpha). Expression of the receptor is high in liver, heart and skeletal muscle, but decreases with age. A combined 1H NMR spectroscopy and GC-MS metabolomic approa...

2018-10-11 | MTBLS261 | MetaboLights

Daratumumab plus lenalidomide, bortezomib and dexamethasone in newly diagnosed multiple myeloma: Analysis of vascular thrombotic events in the GRIFFIN study.

Not available

S-EPMC9825872 | biostudies-literature

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