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ProteomicsMassNet: billion-scale AI-ready mass spectral corpus empowering scalable deep learning in proteomics
Breakthroughs in artificial intelligence (AI) for natural language processing and computer vision have been largely driven by high-quality, large-scale datasets such as OpenWebText and ImageNet. Inspired by this, we present MassNet, a foundational resource for proteomics designed to accelerate deep ...
ORGANISM(S): Danio rerio (Zebrafish) (Brachydanio rerio) Toxoplasma gondii Glycine max Mus musculus (Mouse) Capsicum annuum Acinetobacter baumannii Sus scrofa domesticus (domestic pig) Rhodopseudomonas palustris Homo sapiens (Human) Zea mays (Maize) Streptomyces coelicolor Callithrix jacchus Rattus norvegicus (Rat) Bacillus subtilis Legionella pneumophila Arabidopsis thaliana (Mouse-ear cress) Trypanosoma brucei Staphylococcus epidermidis Gallus gallus (Chicken) Drosophila melanogaster (Fruit fly) Oryza sativa (Rice) Caenorhabditis elegans Bacillus cereus Chlamydomonas reinhardtii Bos taurus (Bovine) Moorella thermoacetica Zymomonas mobilis Oryctolagus cuniculus (Rabbit) Pseudomonas aeruginosa Coffea arabica (Arabian coffee) Canis familiaris (Dog) (Canis lupus familiaris) Escherichia coli Saccharomyces cerevisiae (Baker's yeast) Staphylococcus aureus Equus caballus (Horse) 
2026-10-20 | PXD071590 | Pride
MetabolomicsDecipher aging related skin microbiome and metabolites crosstalk from a chronologically matched cohort

Aging has shown close link to shifts in the skin microbiome in population cohort study. However, how variations in microbial communities relate to divergent skin aging within individuals of the same chronological ages remains unclear. In this study, we performed phenotypic, metabolomic and metage...

2025-01-03 | MTBLS11994 | MetaboLights
ProteomicsiDIA-QC: AI-empowered Data-Independent Acquisition Mass Spectrometry-based Quality Control
Quality control (QC) in mass spectrometry (MS)-based proteomics is mainly based on data-dependent acquisition (DDA) analysis of standard samples. Here, we collected 2638 files acquired by data independent acquisition (DIA) and paired DDA files from mouse liver digests using 21 mass spectrometers acr...
ORGANISM(S): Mus musculus (Mouse) 
2025-05-06 | PXD051878 | Pride
Quality control  data independent acquisition  machine learning 
UnknownA Generative AI-Assisted Piezo-MEMS Ultrasound Device for Plant Dehydration Monitoring.
Not available
S-EPMC12407371 | biostudies-literature
ProteomicsiDIA-QC: AI-empowered Data-Independent Acquisition Mass Spectrometry-based Quality Control
Quality control (QC) in mass spectrometry (MS)-based proteomics is mainly based on data-dependent acquisition (DDA) analysis of standard samples. Here, we collected 2638 files acquired by data independent acquisition (DIA) and paired DDA files from mouse liver digests using 21 mass spectrometers acr...
ORGANISM(S): Mus musculus (Mouse) 
2025-05-07 | PXD055173 | Pride
Machine learning Dia Quality control Swath Mouse liver Diapasef 
ProteomicsiDIA-QC: AI-empowered Data-Independent Acquisition Mass Spectrometry-based Quality Control
Quality control (QC) in mass spectrometry (MS)-based proteomics is mainly based on data-dependent acquisition (DDA) analysis of standard samples. Here, we collected 2638 files acquired by data independent acquisition (DIA) and paired DDA files from mouse liver digests using 21 mass spectrometers acr...
ORGANISM(S): Mus musculus (Mouse) 
2024-11-08 | PXD052871 | Pride
Quality control  data independent acquistion diapasef 
TranscriptomicsDeep sequencing identifies PD0325901 modulated microRNAs in the J1 mESCs
PD0325901 is involved in improving reprogramming efficiency during inducing pluripotent stem cells (iPSC) or maintain a blastocyst-like state in embryonic stem cells (ESC). However, the knowledge about this small molecule regulating miRNAs in ESC was limited. To understand the role of miRNAs during ...
ORGANISM(S): Mus musculus 
2016-05-17 | E-GEOD-67570 | biostudies-arrayexpress
UnknownA machine and human reader study on AI diagnosis model safety under attacks of adversarial images.
Not available
S-EPMC8671500 | biostudies-literature
UnknownA pro-drug approach for selective modulation of AI-2-mediated bacterial cell-to-cell communication.
Not available
S-EPMC3376627 | biostudies-literature
TranscriptomicsIdentifying PD0325901-regulated genes in the J1 mESCs
It has been demonstrated that PD0325901 promotes self-renewal of mouse embryonic stem cells, however, the target genes of PD0325901 are not fully understood. To better understand the downstream target genes of PD0325901, we performed Microarray analyses to identify their downstream targets. The data...
ORGANISM(S): Mus musculus 
2016-05-17 | E-GEOD-67534 | biostudies-arrayexpress
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