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Unknown
(902)
Transcriptomics
(612)
Genomics
(599)
Proteomics
(205)
Metabolomics
(32)
Other
(8)
Models
(5)
Methylation profiling
(1)
Multiomics
(1)
Organisms
Mycobacterium tuberculosis
(270)
Mycobacterium tuberculosis H37Rv
(248)
Homo sapiens
(107)
Mus musculus
(80)
Mycobacterium tuberculosis CDC1551
(17)
Mycolicibacterium smegmatis MC2 155
(7)
Mycobacterium tuberculosis H37Ra
(6)
Mycobacterium tuberculosis str. Erdman = ATCC 35801
(5)
Mycobacterium tuberculosis variant bovis
(5)
Thermus thermophilus HB8
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Oryctolagus cuniculus
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Mycobacterium avium subsp. paratuberculosis
(3)
Macaca fascicularis
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Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2
(2)
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Corynebacterium glutamicum ATCC 13032
(1)
Mycobacterium canetti
(1)
Mycobacterium tuberculosis HN878
(1)
Mycobacterium marinum E11
(1)
Mycobacterium marinum M
(1)
Mycobacterium avium subsp. paratuberculosis K-10
(1)
Organisms
Mycobacterium tuberculosis H37Rv
(169)
Mycobacterium tuberculosis
(129)
Mus musculus
(63)
Homo sapiens
(51)
Mycobacterium tuberculosis H37RvSiena
(2)
Mycobacterium tuberculosis H37Ra
(2)
Mycolicibacterium smegmatis
(2)
Macaca mulatta
(2)
Bos taurus
(2)
Mycobacterium tuberculosis IAR2
(1)
Mycobacterium tuberculosis H37RvLP
(1)
Mycobacterium tuberculosis EAI5/NITR206
(1)
Mycobacterium tuberculosis H37RvMA
(1)
Mycobacterium tuberculosis H37RvCO
(1)
Mycobacterium tuberculosis H37Rv_2009
(1)
Mycobacterium tuberculosis EAI5
(1)
Mycobacterium tuberculosis Tn11:H37Rv
(1)
Mycobacterium tuberculosis H37RvJO
(1)
Mycobacterium tuberculosis H37RvHA
(1)
Mycobacterium tuberculosis CAS/NITR204
(1)
Mycobacterium tuberculosis str. Beijing/NITR203
(1)
Mycobacterium tuberculosis str. Haarlem/NITR202
(1)
Mycobacterium tuberculosis CDC1551
(1)
Mycobacterium tuberculosis subsp. tuberculosis
(1)
Mycobacterium tuberculosis variant bovis BCG
(1)
Mycobacterium
(1)
Mycobacterium tuberculosis variant bovis BCG str. Tokyo 172
(1)
Escherichia coli K-12
(1)
Danio rerio
(1)
mouse gut metagenome
(1)
Repository
ENA
(557)
biostudies-arrayexpress
(389)
geo
(283)
pride
(131)
MassIVE
(27)
MetaboLights
(15)
MetabolomicsWorkbench
(15)
PeptideAtlas
(11)
iProX
(8)
PAXDB
(7)
jPOST
(5)
PanoramaPublic
(5)
BioModels
(4)
EGA
(2)
GNPS
(2)
Cell Collective
(1)
EVA
(1)
Tissue
Cell culture
(18)
Macrophage
(12)
Cultured cells
(9)
Bacterial cells
(6)
Blood serum
(4)
Prokaryotic cell
(4)
Cell line cell
(3)
Cell suspension culture
(3)
Primary cell
(3)
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(2)
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(2)
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(2)
Blood
(1)
Bronchoalveolar lavage
(1)
Lung
(1)
Monocyte
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Protein
(1)
Response to bacterium
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Spleen
(1)
T cell
(1)
Whole body
(1)
Disease
Tuberculosis
(33)
Tuberculosis
(16)
Pulmonary tuberculosis
(12)
Non-diabetic
(1)
Cystic fibrosis
(1)
Extrapulmonary tuberculosis
(1)
Lymph node tuberculosis
(1)
Mixed disorder as reaction to stress
(1)
Technology Type
Mass Spectrometry
(146)
Shotgun proteomics
(70)
Bottom-up proteomics
(18)
Data-dependent acquisition
(16)
ESI
(15)
Data-independent acquisition
(11)
Mass spectrometry
(10)
Affinity purification coupled with mass spectrometry proteomics
(8)
SWATH MS
(7)
Top-down proteomics
(7)
Mass spectrometry assay
(5)
Gel-based experiment
(5)
Affinity proteomics
(2)
Immunopeptidomics
(2)
All-ion fragmentation
(1)
Chemical cross-linking coupled with mass spectrometry proteomics
(1)
SRM/MRM
(1)
Instrument Platform
Illumina NovaSeq 6000
(13)
NextSeq 500
(11)
Illumina HiSeq 2000
(8)
Illumina NovaSeq X
(7)
Illumina HiSeq 2500
(7)
Chemostat
(3)
Bioanalyser
(3)
Illumina MiSeq
(3)
NextSeq 550
(3)
Nanodrop N1000 spectrophotometer
(2)
Bellco roll-in incubator
(2)
Variable Atmosphere Incubator
(2)
NA
(2)
Illumina DNA Prep sample preparation kits (Illumina Inc., San Diego, CA, USA). Final libraries concentrations and size were assessed with Quant-IT DNA Assay Kit and Agilent 4200 Tapestation System (Agilent Technologies, Milan, Italy),
(1)
QIAamp DNA minikit, Qiagen, Germany
(1)
Rstudio
(1)
Microbeads
(1)
GeneChip Instrument System
(1)
Affymetrix mouse gene 1.0 ST arrays
(1)
GenePix 4000B Microarray Scanner
(1)
Qubit 2.0, Agilent 2100
(1)
Affymetrix 428
(1)
Axon 4000B scanner
(1)
Anaerobic workstation with airlock
(1)
Agilent 2100 Bioanalyzer
(1)
ScanArray 5000 [PerkinElmer]
(1)
Illumina Genome Analyzer IIx
(1)
NanoDrop
(1)
Generation III Array Scanner [Amersham]
(1)
None
(1)
Publication Date
2013
(77)
2014
(71)
2010
(68)
2018
(62)
2012
(53)
2026
(51)
2025
(47)
2022
(45)
2016
(45)
2021
(44)
2015
(44)
2011
(33)
2024
(32)
2023
(32)
2019
(30)
2008
(30)
2009
(28)
2007
(28)
2020
(24)
2017
(24)
2005
(5)
2006
(4)
2004
(2)
UNIPROT ID/AC
35KD_MYCTU
(5)
A85A_MYCTU
(5)
A85B_MYCTU
(5)
A85C_MYCTU
(5)
ACDP_MYCTU
(5)
ACNA_MYCTU
(5)
I6X8D2
(1)
P9WPB3
(1)
Q79FX8
(1)
P0CH91
(1)
Q79FX6
(1)
P9WPB1
(1)
P9WQD9
(1)
P9WQD7
(1)
P9WGR1
(1)
O53580
(1)
P9WNG3
(1)
I6Y778
(1)
P9WGR9
(1)
P9WGT3
(1)
P9WNG5
(1)
P9WNZ3
(1)
P9WNZ7
(1)
P9WPB5
(1)
P9WQD3
(1)
P9WQH7
(1)
O53578
(1)
P9WQH9
(1)
P96890
(1)
P95029
(1)
CHEBI ID
CHEBI:113592
(1)
CHEBI:389573
(1)
CHEBI:8938081
(1)
CHEBI:29358
(1)
CHEBI:6798184
(1)
CHEBI:211579
(1)
CHEBI:5696069
(1)
CHEBI:8878982
(1)
CHEBI:5632460
(1)
CHEBI:8869363
(1)
CHEBI:113593
(1)
CHEBI:25438
(1)
CHEBI:25436
(1)
CHEBI:25437
(1)
CHEBI:44520
(1)
CHEBI:24712
(1)
CHEBI:22323
(1)
CHEBI:33249
(1)
CHEBI:17087
(1)
CHEBI:25134
(1)
CHEBI:23916
(1)
CHEBI:22221
(1)
CHEBI:43176
(1)
CHEBI:3108
(1)
CHEBI:22882
(1)
CHEBI:13905
(1)
CHEBI:41236
(1)
CHEBI:22884
(1)
CHEBI:14405
(1)
CHEBI:2458
(1)
Metabolite Name
L-Proline
(2)
Glycine
(2)
Succinic acid
(2)
Thymine
(2)
Citrate
(2)
Alpha-ketoglutarate
(2)
Mycothiol
(1)
Ergothioneine(1+)
(1)
Acetyl-CoA_HMDB0001206
(1)
FAD_HMDB0001248
(1)
Coenzyme A_HMDB0001423
(1)
NADP_HMDB0000217
(1)
Stachyose_HMDB0003553
(1)
NADH_HMDB0001487
(1)
NAD_HMDB0000902
(1)
Uridine diphosphate-N-acetylglucosamine_HMDB0000290
(1)
Guanosine diphosphate mannose_HMDB0001163
(1)
Uridine diphosphate glucose_HMDB0000286
(1)
Taurocholic acid_HMDB0000036
(1)
Adenosine triphosphate_HMDB0000538
(1)
Raffinose_HMDB0003213
(1)
Taurodeoxycholic acid_HMDB0000896
(1)
Deoxycholic acid glycine conjugate_HMDB0000631
(1)
Adenosine diphosphate_HMDB0001341
(1)
Sucrose 6-Phosphate_No HMDB data
(1)
Cholic acid_HMDB0000619
(1)
3-Oxocholic acid_HMDB0000502
(1)
Uridine 5'-diphosphate_HMDB0000295
(1)
Deoxycholic acid_HMDB0000626
(1)
S-Adenosylhomocysteine_HMDB0000939
(1)
First Public Date
2014
(104)
2025
(55)
2024
(45)
2018
(45)
2023
(43)
2026
(42)
2022
(35)
2013
(35)
2021
(34)
2019
(30)
2020
(28)
2017
(24)
2015
(21)
2016
(15)
2011
(1)
Modelling Approach
Constraint-based model
(2)
Lab affiliation
Professor, Microbiology, Immunology, and Pathology Mycobacteria Research Laboratories Scientific Director, Rocky Mountain Regional Biocontainment Laboratory Editor-in-chief, BMC Mycobacteria
(4)
Massachusetts Institute of Technology
(3)
Colorado State University
(2)
Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town
(2)
ETH Zurich
(2)
Farnusch Kaschani, Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany
(2)
Global Health Institute, EPFL, Lausanne, Switzerland
(2)
Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College
(2)
Rutgers Robert Wood Johnson Medical School Department of Biochemistry and Molecular Biology
(2)
Shanghai Center for Systems Biomedicine Shanghai Jiao Tong University
(2)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China.
(1)
1Departments of Medicine & 2Pathology, Case Western Reserve University and University Hospitals Case Medical Center; 3Department of Molecular Biology & Microbiology Case Western Reserve University School of Medicine, Cleveland, Ohio 44106,USA.
(1)
A.N. Bach Institute of Biochemistry, Federal Research Centre ‘Fundamentals of Biotechnology’ of the Russian Academy of Sciences, Leninsky pr., 33, 119071, Moscow, Russia
(1)
Aix-Marseille Univ, CNRS, LISM, IMM FR3479, 13009 Marseille, France
(1)
Aix-Marseille Univ, Inserm, CNRS, Institut Paoli-Calmettes, CRCM, Marseille Protéomique
(1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany
(1)
Assistant Professor Ramalingaswami Fellow Translational Health Science and Technology Institute NCR Biotech Science Cluster 3rd Milestone, Faridabad - Gurgaon Expressway PO box # 04 FARIDABAD 121001, India
(1)
Associate Professor School of Life Sciences University of Hawaii at Manoa
(1)
Associate Professor, Mycobacteria Research Laboratories Dept of Microbiology, Immunology,& Pathology (http://www.cvmbs.colostate.edu/DirectorySearch/Search/MemberProfile/CVMBS/3607) Associate Director, Research Integrity and Compliance Review Office (http://ricro.colostate.edu/) Colorado State University
(1)
Australian Infectious Diseases Research Centre and School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD, Australia
(1)
Boston Children's Hospital
(1)
Boston Children's Hospital | Harvard Medical School
(1)
CNRS-IPBS Immunomodulation By Mycobacterial Lipids and Glycoconjugates 205 route de Narbonne 31077 Toulouse cedex 4
(1)
CSIR-CCMB
(1)
Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Instituto Nacional de Ciência e Tecnologia em Tuberculose (INCT-TB), Programa de Pós-Graduação em Biologia Celular e Molecular - Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS), Porto Alegre, Brazil
(1)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia.
(1)
Chinese Center for Disease Control and Prevention
(1)
DST-NRF Center for Excellence in Biomedical TB research south African Medical Research Council Center for Tuberculosis Research Division of Molecular Biology and Human Genetics Department of Biomedical Science Faculty of Medicine and Health Science Stellenbosch University Cape Town South Africa
(1)
DST/NRF Centre of Excellence for Biomedical Tuberculosis Research/South African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, Cape Town, South Africa
(1)
Department of Biochemistry and Molecular Biology, Rutgers University
(1)
Tags
pathogen
(321)
pathogen:bacterium
(321)
xref:PubMed:31719182
(12)
xref:PubMed:32205882
(4)
xref:PubMed:37439558
(3)
xref:PubMed:27249779
(3)
xref:PubMed:27109928
(3)
xref:PubMed:23125364
(3)
xref:PubMed:31541022
(3)
xref:PubMed:38236787
(3)
xref:PubMed:20472797
(3)
xref:PubMed:30833303
(2)
xref:PubMed:42034649
(2)
xref:PubMed:41208107
(2)
xref:PubMed:40678166
(2)
xref:PubMed:34140955
(2)
xref:PubMed:31350281
(2)
xref:PubMed:33514768
(2)
xref:PubMed:37642294
(2)
xref:PubMed:35328388
(2)
xref:PubMed:40523023
(2)
xref:PubMed:40401952
(2)
xref:PubMed:38091389
(2)
xref:PubMed:34873198
(2)
xref:PubMed:34977849
(2)
xref:PubMed:24874799
(2)
xref:PubMed:30327467
(2)
xref:PubMed:19661177
(2)
xref:PubMed:42098153
(2)
xref:PubMed:22307756
(2)
IsPrivate
False
(4)
Model Flag
Non Kinetic
(4)
Submitter Keywords
FROG
(2)
Classification
bacteria
(321)
Study type
Transcription profiling by array
(275)
RNA-seq of coding RNA
(42)
Unknown experiment type
(10)
ChIP-seq
(10)
DNA-seq
(8)
Proteomic profiling by array
(7)
Other
(6)
RNA-seq of total RNA
(6)
ChIP-chip by tiling array
(3)
Transcription profiling by tiling array
(3)
One-color microarray
(2)
High-throughput sequencing
(2)
Human - One-color microarray
(2)
RIP-seq
(2)
MicroRNA profiling by array
(2)
RNA-seq of coding RNA from single cells
(2)
Two-color microarray
(1)
Human - High-throughput sequencing
(1)
Animal - High-throughput sequencing
(1)
Ribo-seq
(1)
Methylation profiling by array
(1)
RNA-seq of non coding RNA
(1)
Release Date
2021
(83)
2014
(83)
2013
(80)
2010
(79)
2020
(74)
2015
(73)
2022
(72)
2016
(71)
2025
(70)
2024
(68)
2017
(65)
2012
(59)
2018
(58)
2023
(57)
2019
(54)
2011
(50)
2009
(41)
2008
(37)
2007
(33)
2026
(22)
2006
(16)
2005
(11)
2001
(8)
2003
(6)
2000
(6)
2002
(5)
1998
(5)
1999
(3)
2004
(2)
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Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv3208
Not available
ORGANISM(S):
Mycobacterium tuberculosis H37Rv
ST000937
|
MetabolomicsWorkbench
Cite
Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv1130
Not available
ORGANISM(S):
Mycobacterium tuberculosis H37Rv
ST000234
|
MetabolomicsWorkbench
Cite
Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv2247
Not available
ORGANISM(S):
Mycobacterium tuberculosis H37Rv
ST000936
|
MetabolomicsWorkbench
Cite
Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv0100
Not available
ORGANISM(S):
Mycobacterium tuberculosis H37Rv
ST000932
|
MetabolomicsWorkbench
Cite
Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv3311
Not available
ORGANISM(S):
Mycobacterium tuberculosis H37Rv
ST000268
|
MetabolomicsWorkbench
Cite
Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv3244
Not available
ORGANISM(S):
Mycobacterium tuberculosis H37Rv
ST000265
|
MetabolomicsWorkbench
Cite
Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv3280
Not available
ORGANISM(S):
Mycobacterium tuberculosis H37Rv
ST000264
|
MetabolomicsWorkbench
Cite
Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv1016
Not available
ORGANISM(S):
Mycobacterium tuberculosis H37Rv
ST000263
|
MetabolomicsWorkbench
Cite
Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv1713
Not available
ORGANISM(S):
Mycobacterium tuberculosis H37Rv
ST000262
|
MetabolomicsWorkbench
Cite
Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv3651
Not available
ORGANISM(S):
Mycobacterium tuberculosis H37Rv
ST000941
|
MetabolomicsWorkbench
Cite
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