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Unknown (7049)
Transcriptomics (138)
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Genomic (1)

Organisms

Homo sapiens (84)
Mus musculus (26)
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Saccharomyces cerevisiae (7)
Arabidopsis thaliana (6)
Caenorhabditis elegans (6)
Rattus norvegicus (5)
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Entamoeba invadens (2)
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Phocaeicola vulgatus (1)
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synthetic construct (1)
Apis mellifera (1)

Organisms

Mus musculus (13)
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Repository

biostudies-arrayexpress (145)
pride (75)
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Tissue

Cell culture (13)
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Disease

Breast cancer (5)
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Brain cancer (1)
Malaria (1)
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Malignant neoplasm of ovary (1)
COVID-19 (1)
Disease free (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (76)
Shotgun proteomics (40)
Mass spectrometry (35)
Bottom-up proteomics (13)
Affinity purification coupled with mass spectrometry proteomics (9)
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Gel-based experiment (4)
Data-dependent acquisition (3)
Top-down proteomics (3)
SRM/MRM (2)
Unknown (1)
NMR spectroscopy (1)
ESI (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (15)
Liquid Chromatography MS - positive - reverse phase (13)
NextSeq 550 (9)
Illumina HiSeq 2500 (7)
Illumina NovaSeq 6000 (5)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (4)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (4)
NextSeq 500 (3)
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Q Exactive (2)
Gas Chromatography MS - (2)
Liquid Chromatography MS - positive (2)
Liquid Chromatography MS - alternating - hilic (2)
DNA Microarray Scanner BA [Agilent Technologies] (1)
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Illumina HiSeq 4000 (1)
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GC色Agilent 7890A, Agilent ,LECOChroma TOF PEGASUS HT, LECO (1)
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MS Imaging - - - LTQ Orbitrap XL (Thermo Scientific) (1)
Flow injection analysis MS - (1)
Liquid Chromatography MS (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - - - Q Exactive (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
5975C Series GC/MSD (Agilent) (1)

Publication Date

2026 (20)
2013 (20)
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2025 (18)
2022 (18)
2015 (17)
2020 (17)
2005 (16)
2014 (16)
2012 (15)
2010 (15)
2024 (14)
2008 (14)
2021 (13)
2019 (13)
2018 (11)
2016 (11)
2017 (6)
2007 (5)
2009 (4)
2011 (3)
2006 (3)

UNIPROT ID/AC

A0A1S3D013_DIACI (3)
A0A3Q0IVV3_DIACI (3)
A0A3Q0JLK0_DIACI (3)
A0A1S4EMF6_DIACI (3)
A0A1S3DRQ9_DIACI (3)
A0A3Q0JL52_DIACI (3)
A0A1S4ED27_DIACI (3)
A0A3Q0IWB0_DIACI (3)
A0A1S3DD98_DIACI (3)
A0A3Q0IQE9_DIACI (3)
A0A3Q0IX28_DIACI (3)
A0A3Q0J2Q1_DIACI (3)
A0A1S3DNH8_DIACI (3)
A0A3Q0IWM0_DIACI (3)
A0A3Q0ILW3_DIACI (3)
A0A3Q0J5N6_DIACI (3)
A0A1S3DLW1_DIACI (3)
A0A3Q0IN41_DIACI (3)
A0A1S3DTJ3_DIACI (3)
A0A1S3CUK5_DIACI (3)
A0A3Q0J765_DIACI (3)
Q5EG47 (1)
P35569 (1)
P06213 (1)
P92973 (1)
Q93WK5 (1)
Q8L500 (1)
Q9SQI2 (1)
Q9LKL2 (1)
O81713 (1)

CHEBI ID

CHEBI:28044 (9)
CHEBI:15428 (8)
CHEBI:18186 (7)
CHEBI:30769 (7)
CHEBI:30805 (6)
CHEBI:26271 (6)
CHEBI:15741 (6)
CHEBI:6650 (6)
CHEBI:16335 (6)
CHEBI:27266 (6)
CHEBI:30915 (6)
CHEBI:27897 (6)
CHEBI:17521 (5)
CHEBI:16811 (5)
CHEBI:28300 (5)
CHEBI:25017 (5)
CHEBI:16865 (5)
CHEBI:15940 (5)
CHEBI:17750 (5)
CHEBI:16449 (5)
CHEBI:15843 (5)
CHEBI:18012 (5)
CHEBI:32816 (5)
CHEBI:15354 (5)
CHEBI:15756 (5)
CHEBI:16828 (5)
CHEBI:520 (4)
CHEBI:16860 (4)
CHEBI:22470 (4)
CHEBI:33699 (1)

Metabolite Name

Glycine (5)
Betaine (5)
Ornithine (5)
Choline (5)
Tyrosine (5)
Adenosine (5)
L-Tryptophan (5)
L-Proline (4)
Nicotinic acid (4)
Succinic acid (4)
Fumaric acid (4)
Malic acid (4)
Oleamide (4)
Cytosine (4)
Phenylalanine (4)
Glutamine (4)
Uric acid (4)
Creatine (4)
L-Leucine (4)
3-O-methylquercetin (3)
Quinic acid (3)
LysoPC(15:0) (3)
LysoPE(16:0/0:0) (3)
N-Palmitoylsphingosine (3)
LysoPC(16:0) (3)
Leucine (3)
Glycerol (3)
Valine (3)
Propionylcarnitine (3)
Thiamine (3)

First Public Date

2019 (7)
2020 (4)
2016 (4)
2017 (3)
2014 (3)
2023 (2)
2026 (1)
2024 (1)
2018 (1)

Modelling Approach

Ordinary differential equation model (10)
Constraint-based model (1)

Lab affiliation

Department of Microbiology and Immunology, The Peter Doherty Institute for Infection and Immunity, The University of Melbourne, 792 Elizabeth Street, Melbourne, VIC 3000, Australia. (3)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
Senior Postdoctoral Fellow, Huntington Laboratory, The Walter and Eliza Hall Institute, Australia (2)
Population Health and Immunity Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Melbourne, VIC, Australia (2)
Department of Biochemistry & Pharmacology, University of Melbourne (1)
MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh EH4 2XU (1)
Department of Pharmacology and Cancer Biology Duke University School of Medicine Durham, North Carolina (1)
The Walter and Eliza Hall Institute of Medical Research Parkville VIC 3052, Australia Department of Medical Biology University of Melbourne Parkville VIC 3010, Australia (1)
Harvard Medical School, Boston, USA Instituto de Investigación Sanitaria del Principado de Asturias (ISPA), Oviedo, Spain (1)
Senior Group Leader Malaria Biochemistry Laboratory Francis Crick Institute London NW1 1AT (1)
Population Health and Immunity Division, Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Melbourne, VIC, Australia (1)
Head, Cancer Data Science (ProCan), Children's Medical Research Institute, The University of Sydney, Westmead, NSW, Australia (1)
Associate Professor Microbiology and Immunology Department Upstate Medical University Weiskotten Hall Rm. 2273 766 Irving Avenue Syracuse, NY 13210 Tel 315.464.5870 (1)
The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, Australia (1)
Professor of Cell Proliferation Institute of Clinical Sciences - Faculty of Medicine, Imperial College London (1)
MRC - Laboratory of Medical Sciences (1)
KAUST Smart-Health Initiative(KSHI)and Biological and Environmental Science and Engineering (BESE) Division, King Abdullah University of Science and Technology (KAUST), Jeddah, Saudi Arabia. Dept. of Biochemistry, McGill University, 3655 Promenade Sir William Osler, Montreal, QC, H3G1Y6, Canada. Rosalind & Morris Goodman Cancer Institute, McGill University, 1160 Pine Avenue, Montreal, QC, H3A1A3, Canada. (1)
University of Cagliari (1)
Infection and Global Health, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia. School of Population and Global Health, University of Melbourne, Melbourne, Victoria, Australia. Department of Medical Biology, The University of Melbourne, Parkville, Victoria, Australia. Diagnostic Haematology, The Royal Melbourne Hospital, Melbourne, Victoria, Australia. (1)
UMKC School of Medicine Department of Ophthalmology Kansas City, Missouri, USA (1)
Infection Biology (1)
Centre for Genetics, Ecology and Physiology, Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Australia. (1)
Lab for Metabolic Signaling, Department of Pediatrics, University of Groningen, University Medical Center Groningen (UMCG), 9713 AV Groningen, The Netherlands and School of Medicine and Health Sciences, Carl von Ossietzky University Oldenburg, 26111 Oldenburg, Germany (1)
IGMM, University of Edinburgh (1)
Department of Growth and Development, Biozentrum, University of Basel, Switzerland (1)
Royal Society University Research Fellow, Group Leader and Research Lecturer at Sir William Dunn School of Pathology (University of Oxford); Fellow by special election at St. Edmund Hall (University of Oxford) (1)
Department of Growth and Development, Biozentrum, University of Basel, Basel, Switzerland (1)
Lachlan J. Smith, Ph.D. Associate Professor Department of Orthopaedic Surgery Perelman School of Medicine University of Pennsylvania 371 Stemmler Hall, 3450 Hamilton Walk Philadelphia, PA, 19104 USA (1)
Department of Ecology, Environment and Evolution School of Life Sciences, La Trobe University, Bundoora Victoria, Australia (1)
Macquarie University, North Ryde, Sydney Australia Faculty of Science and Engineering Deparment of Chemistry and Biomolecular Science (1)

IsPrivate

False (13)

Model Flag

Non Kinetic (3)

Classification

bacteria (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (75)
RNA-seq of coding RNA (16)
RNA-seq of non coding RNA (10)
CUT&RUN (7)
ChIP-seq (6)
Methylation profiling by array (5)
RNA-seq of total RNA (5)
Unknown experiment type (3)
Animal - High-throughput sequencing (2)
CLIP-seq (2)
Comparative genomic hybridization by array (2)
Other (2)
RNA-seq of coding RNA from single cells (2)
ChIP-chip by tiling array (1)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
ATAC-seq (1)
Ribo-seq (1)
DNA-seq (1)

Release Date

2021 (720)
2022 (711)
2023 (696)
2025 (625)
2020 (575)
2024 (529)
2019 (460)
2018 (381)
2016 (357)
2015 (332)
2017 (305)
2014 (270)
2013 (240)
2012 (195)
2011 (167)
2010 (139)
2009 (104)
2008 (96)
2026 (95)
2007 (60)
2006 (45)
2005 (40)
2004 (13)
2003 (13)
2002 (10)
2001 (5)
1998 (4)
2000 (3)
1997 (2)
1996 (1)

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Small RNA pyrosequencing in the protozoan parasite Entamoeba histolytica reveals strain-specific small RNAs that target virulence genes

We provided a full spectrum analysis for E. histolytica AGO2-2 associated 27nt small RNAs. Additionally, comparative analysis of small RNA populations from virulent and non-virulent amebic strains indicates that small RNA populations may regulate virulence genes. AGO2-2 bound small RNAs from E. hist...

ORGANISM(S): Entamoeba histolytica

2013-01-24 | E-GEOD-43668 | biostudies-arrayexpress

Small RNAs during E. histolytica stress response

We analyzed ~27nt small RNAs from Entamoeba histolytica trophozoites in basal conditions and after heat shock or oxidative stress E. histolytica trophozoites were treated with 1mM H2O2 for 1hr, or heat shocked at 42°C for 1hr and RNA was isolated and small RNA populations were compared to small RNA ...

ORGANISM(S): Entamoeba histolytica

2015-07-22 | E-GEOD-67230 | biostudies-arrayexpress

Small RNAs during E. invadens stage conversion

We analyzed ~27nt small RNAs from Entamoeba invadens trophozoites, 24h cysts, 72h cysts, and excysting cells (8h) E. invadens trophozoites were induced to encyst by incubation in low glucose media, and parasites harvested at 0, 24 and 72h. A subset of the 72h cysts were induced to excyst, and parasi...

ORGANISM(S): Entamoeba invadens

2015-07-22 | E-GEOD-67231 | biostudies-arrayexpress

E. coli Anaerobic/aerobic transitions in chemostat

Gene-expression measurements were made over a 20 minute time course as steady state E. coli cells were subjected to an anaerobic to aerobic or an aerobic to anaerobic environmental change.

ORGANISM(S): Escherichia coli

2012-07-17 | E-MTAB-996 | biostudies-arrayexpress

Proteomic analysis of RNA modification impacts

Proteomic analysis of E. coli 8739 and the role of RNA modificaiton by silencing RNA modifciaiton with CRISPRi

ORGANISM(S): Escherichia coli

2026-09-28 | PXD069998 | Pride

E. coli