Haloferax - OmicsDI

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Unknown (376)
Genomics (193)
Proteomics (58)
Transcriptomics (45)
Other (7)
Metabolomics (5)

Organisms

Haloferax volcanii (30)
Haloferax mediterranei (19)
Haloferax volcanii DS2 (19)
Thermoplasma acidophilum (3)
Pyrococcus furiosus (3)
Thermococcus kodakarensis (3)
Haloferax mediterranei ATCC 33500 (3)
Pyrodictium abyssi (2)
Methanococcus maripaludis (2)
Halobacterium salinarum (2)
Sulfolobus acidocaldarius (2)
Escherichia coli (2)
Dryas iulia (1)
Sphaeroforma arctica (1)
Planococcus halocryophilus (1)
Capsaspora owczarzaki (1)
Acetivibrio thermocellus (1)
Perkinsus marinus (1)
Methanosarcina mazei (1)
Methanobrevibacter smithii (1)
Methanomassiliicoccus luminyensis (1)
Methanosphaera stadtmanae (1)
Creolimax fragrantissima (1)
Thermococcus sp. AM4 (1)
Daphnia pulex (1)
Haloarcula hispanica (1)
Methanocaldococcus jannaschii (1)
Strongylocentrotus purpuratus (1)
Salmonella enterica (1)
Dictyostelium discoideum (1)

Organisms

Haloferax volcanii (32)
Haloferax volcanii DS2 (20)
Haloferax mediterranei (13)
Haloferax mediterranei ATCC 33500 (4)
Haloferax larsenii (3)
Haloferax gibbonsii (3)
Haloferax sulfurifontis ATCC BAA-897 (2)
Haloferax mucosum ATCC BAA-1512 (2)
Haloferax denitrificans ATCC 35960 (2)
Thermoplasma acidophilum (2)
114529 (2)
Haloferax prahovense (2)
Haloferax denitrificans (2)
Haloferax massiliensis (1)
Haloferax sp. s1 (1)
Haloferax sp. S2CR25-2 (1)
Haloferax sp. S2CR25 (1)
Haloferax sulfurifontis (1)
Haloferax mucosum (1)
Haloferax sp. AS1 (1)
2254 (1)
Haloferax sp. Q22 (1)
Haloferax (1)
Haloferax sp. BAB-2207 (1)
Haloferax sp. CBA1148 (1)
Haloferax sp. CBA1149 (1)
Haloferax sp. CBA1150 (1)
Haloferax sp. ATCC BAA-646 (1)
Haloferax sp. ATCC BAA-645 (1)
Haloferax sp. ATCC BAA-644 (1)

Repository

ENA (183)
geo (51)
pride (44)
biostudies-arrayexpress (11)
GNPS (5)
PAXDB (5)
jPOST (4)
MassIVE (3)
iProX (2)

Tissue

Cell culture (5)
Cell line cell (1)
Prokaryotic cell (1)

Technology Type

Mass Spectrometry (44)
Shotgun proteomics (23)
Gel-based experiment (9)
Bottom-up proteomics (7)
Data-dependent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (2)
SWATH MS (2)
Top-down proteomics (2)
Data-independent acquisition (1)

Instrument Platform

Q Exactive HF Orbitrap (4)
Orbitrap Exploris 240 (2)
GenePix 4000A [Axon Instruments] (1)
LTQ (1)
LTQ FT (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)
Waters SYNAPT G2-Si (1)

Publication Date

2023 (20)
2025 (16)
2020 (13)
2018 (13)
2024 (11)
2026 (8)
2021 (8)
2022 (7)
2019 (5)
2015 (5)
2016 (4)
2013 (4)
2012 (4)
2017 (3)
2010 (2)
2007 (1)

UNIPROT ID/AC

AGL10_HALVD (3)
AGL7_HALVD (3)
AGLB_HALVD (3)
AGLP_HALVD (3)
ALF_HALVD (3)
ANTRB_HALVD (3)
CAS5_HALVD (3)
CAS6_HALVD (3)
CAS7_HALVD (3)
CAS8B_HALVD (3)
CETZ1_HALVD (3)
CETZ6_HALVD (3)
CSG_HALVD (3)
D4GP38_HALVD (3)
D4GP49_HALVD (3)
D4GP51_HALVD (3)
D4GP72_HALVD (3)
D4GP86_HALVD (3)
D4GPB9_HALVD (3)
D4GPC8_HALVD (3)
D4GPD3_HALVD (3)
D4GPF8_HALVD (3)
D4GPJ9_HALVD (3)
D4GPU2_HALVD (3)
D4GQ21_HALVD (3)
D4GQ22_HALVD (3)
D4GQG3_HALVD (3)
D4GQK7_HALVD (3)
D4GQU9_HALVD (3)
D4GR08_HALVD (3)

First Public Date

2013 (36)
2024 (25)
2023 (23)
2025 (21)
2022 (15)
2019 (14)
2020 (13)
2015 (8)
2014 (8)
2026 (7)
2018 (7)
2016 (3)
2017 (2)
2021 (1)

Study type

Transcription profiling by array (5)
Other (2)
Cell line - Two-color microarray (1)
Transcription profiling by tiling array (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA (1)

Release Date

2024 (33)
2025 (32)
2021 (32)
2023 (29)
2020 (29)
2018 (22)
2015 (19)
2013 (19)
2019 (18)
2016 (18)
2012 (17)
2022 (16)
2010 (15)
2014 (15)
2017 (12)
2008 (12)
2011 (9)
2009 (9)
2026 (6)
2007 (5)
2006 (4)
2004 (4)
2005 (3)
2002 (3)
2003 (2)
2001 (1)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

Department of Biology, University of Pennsylvania (3)
University of Greifswald, Institute for Microbiology, Department for Microbial Proteomics (3)
University of Pennsylvania, Department of Biology (3)
Department of Microbial Proteomics, Institute of Microbiology, Center for Functional Genomics of Microbes, University of Greifswald, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (2)
Agrochemistry and Biochemistry Department. University of Alicante (1)
Associate Research Professor, Institut de recherches cliniques de Montréal (IRCM) Professeure agrégée, Département de biochimie et médecine moléculaire, Université de Montréal Associate Professor, Division of Experimental Medicine, McGill University (1)
Australian Institute for Microbiology and Infection, University of Technology Sydney, Australia (1)
BGI-Shenzhen, Shenzhen, 518083,China (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Am Fassberg 11, 37077 Goettingen, Germany (1)
Biochemistry III – Institute for Biochemistry, Genetics and Microbiology – University of Regensburg – Germany (1)
Core Facility Proteomics, Institute of Clinical Chemistry, University Medical Center Goettingen, Germany (1)
Department of Biology, Johns Hopkins University, USA (1)
Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA (1)
Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences, Genetics Institute, University of Florida, Gainesville, Florida, 32611 (1)
Dr. Uwe Linne Philipps-Universität Marburg Fachbereich Chemie und Synmikro Gerätezentrum Massenspektrometrie und Elementanalaytik Hans-Meerwein-Str. 4 35032 Marburg, GERMANY (1)
Head of Proteomics & Metabolomics Facility (1)
Institute of Plant Biology and Biotechnology, University of Münster, 48143 Münster, Germany (1)
Institute of Polar Research, ISP-CNR, Messina, Italy (1)
Instituto de Investigaciones Biológicas, Universidad Nacional de Mar del Plata (UNMDP), CONICET, Mar del Plata (7600), Argentina (1)
Instiute for Microbiology (1)
Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), Université de Strasbourg, CNRS, IPHC UMR 7178, F-67000 Strasbourg, France (1)
MRC Laboratory of Medical Sciences (LMS) (1)
Max Planck Institute for Biophysical Chemistry; University Medical Center Goettingen (1)
Max Planck Institute for Marine Microbiology Archaeal Virology Celsiusstrasse 1 28359 Bremen, Germany (1)
Max-Planck Institute for Biophysical Chemistry (1)
Max-Planck Institute of Biophysics (1)
Microbiology and Cell Science at University of Florida (1)
Pacific Northwest National Laboratory (1)
Professor, Microbiology and Cell Science Department, University Of Florida, USA (1)
Professor, Microbiology and Cell Science Department, University Of Florida, USA. (1)

Tags

xref:PubMed:22848480 (4)
xref:PubMed:37994787 (3)
xref:PubMed:38204420 (3)
xref:PubMed:31710291 (2)
xref:PubMed:26374389 (2)
xref:PubMed:40397565 (2)
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xref:PubMed:29309690 (1)
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xref:PubMed:39608714 (1)
xref:PubMed:29463600 (1)
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xref:PubMed:24185008 (1)

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Genes differentially expressed in Haloferax mediterranei strains, DF50 and M-NM-^TdeoR2, with or without induction by fructose

Transcriptional profiling of Haloferax mediterranei DF50 and M-NM-^TdeoR2 with induction by fructose comparing with the strains without this induction. Goal was to explore the effect of induction by fructose on Haloferax mediterranei. Total RNA from the Haloferax mediterranei DF50 and M-NM-^TdeoR2 w...

ORGANISM(S): Haloferax mediterranei

2013-12-18 | E-GEOD-41134 | biostudies-arrayexpress

Haloferax sp. overview

PRJNA177887 | ENA

Chromosomal origin utilisation in Haloferax meiditerranei wild type and mutant strains

We have comprehensively explored the origin utilisation in Haloferax mediterranei. Here we report three active chromosomal origins by genome-wide replication profiling, and demonstrate that when these three origins are deleted, a dormant origin becomes activated. Genomic DNA was extracted from the H...

ORGANISM(S): Haloferax mediterranei

2015-07-08 | E-GEOD-70597 | biostudies-arrayexpress

Haloferax volcanii DS2

Haloferax volcanii Maltose

PRJNA953034 | ENA

Haloferax volcanii DS2

Haloferax volcanii IPTG

PRJNA953035 | ENA

Haloferax volcanii DS2

Haloferax volcanii xylose

PRJNA953037 | ENA

Haloferax volcanii DS2

Haloferax volcanii Arabinose

PRJNA953033 | ENA

Haloferax volcanii DS2

Haloferax volcanii Nucleosome map

PRJNA174818 | ENA

Haloferax sp. DFSO60

Haloferax sp. DFSO60 Genome sequencing

PRJNA1201344 | ENA

Haloferax sp. DFSO52

Haloferax sp. DFSO52 Genome sequencing

PRJNA1200931 | ENA

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