Han Run R - OmicsDI

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Unknown (139)
Proteomics (29)
Transcriptomics (25)
Metabolomics (16)

Organisms

Homo sapiens (17)
Mus musculus (14)
Rattus norvegicus (4)
Saccharomyces cerevisiae (3)
1408434 (3)
Caenorhabditis elegans (2)
Metallosphaera sedula DSM 5348 (1)
Drosophila mojavensis (1)
Pseudomonas aeruginosa PAO1 (1)
Drosophila melanogaster (1)
Acinetobacter baumannii AB_TG2631 (1)
Cohnella sp. (1)
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (1)
Glycine max (1)
Oryza sativa (1)
Pongo sp. (1)
Trichoderma asperellum CBS 433.97 (1)
Trichoderma atroviride IMI 206040 (1)
Trichoderma guizhouense (1)
Trichoderma parepimyces (1)
Trichoderma reesei QM6a (1)
Trichoderma virens Gv29-8 (1)

Repository

pride (29)
biostudies-arrayexpress (25)
MetaboLights (16)

Tissue

Cell culture (5)
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Liver (1)
Lung (1)
Neoplastic cell (1)
Pluripotent stem cell (1)
Seed (1)
Tooth enamel (1)

Disease

Colorectal cancer recurrence-free (1)
Colon cancer (1)
Disease free (1)
Fibromyalgia (1)
Inflammatory bowel disease (1)
Influenza (1)
Pancreatic cancer (1)

Technology Type

Mass Spectrometry (29)
Shotgun proteomics (17)
Mass spectrometry (13)
Bottom-up proteomics (4)
Top-down proteomics (4)
Mass spectrometry assay (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Gel-based experiment (2)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (7)
Liquid Chromatography MS - negative - reverse phase (6)
Illumina Genome Analyzer (2)
Illumina Genome Analyzer II (2)
Liquid Chromatography MS - positive - hilic (2)
GenePix 4000B [Axon Instruments] (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
Bruker (1)
Direct infusion MS - positive (1)
Exactive (Thermo Scientific) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS -negative - reverse-phase (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
MicrOTOF-Q II ESI-Qq-TOF (Bruker) (1)

Publication Date

2021 (10)
2023 (9)
2022 (9)
2013 (6)
2019 (5)
2014 (5)
2026 (5)
2024 (5)
2011 (3)
2016 (2)
2015 (2)
2012 (2)
2010 (2)
2009 (1)
2007 (1)
2018 (1)
2025 (1)
2017 (1)

CHEBI ID

CHEBI:16828 (7)
CHEBI:15971 (6)
CHEBI:16015 (6)
CHEBI:17295 (6)
CHEBI:64561 (6)
CHEBI:64563 (6)
CHEBI:15354 (5)
CHEBI:15891 (5)
CHEBI:16359 (5)
CHEBI:16704 (5)
CHEBI:16750 (5)
CHEBI:16919 (5)
CHEBI:17191 (5)
CHEBI:17203 (5)
CHEBI:17895 (5)
CHEBI:24813 (5)
CHEBI:28281 (5)
CHEBI:28790 (5)
CHEBI:72737 (5)
CHEBI:15318 (4)
CHEBI:16027 (4)
CHEBI:16040 (4)
CHEBI:16238 (4)
CHEBI:16347 (4)
CHEBI:16393 (4)
CHEBI:16414 (4)
CHEBI:16467 (4)
CHEBI:16566 (4)
CHEBI:166830 (4)
CHEBI:16695 (4)

Metabolite Name

Choline (5)
Creatine (4)
L-Histidine (4)
L-Isoleucine (4)
Taurine (4)
15-hydroxy-tetracosa-6,9,12,16,18-pentaenoic acid (3)
2-Hydroxycinnamic acid (3)
3-Indolepropionic acid (3)
5-Aminopentanamide (3)
5-Hydroxy-L-tryptophan (3)
5-Methoxyindoleacetate (3)
9-OxoODE (3)
Adenosine (3)
Adenosine 3'-monophosphate (3)
C17 Sphinganine (3)
Formyl-5-hydroxykynurenamine (3)
Glycerophosphocholine (3)
Glycylproline (3)
Guanosine (3)
Hypoxanthine (3)
Isoleucyl-Valine (3)
L-Carnitine (3)
L-Glutamate (3)
L-Glutamine (3)
L-Tryptophan (3)
L-Tyrosine (3)
L-beta-aspartyl-L-leucine (3)
LysoPC(20:5(5Z,8Z,11Z,14Z,17Z)) (3)
N-Acetyl-DL-methionine (3)
Nelarabine (3)

Study type

Transcription profiling by array (11)
RNA-seq of coding RNA (7)
Transcription profiling by RT-PCR (2)
Other (2)
Methylation profiling by array (2)
RNA-seq of coding RNA from single cells (1)

Release Date

2023 (26)
2025 (25)
2024 (19)
2020 (17)
2021 (16)
2022 (15)
2013 (7)
2019 (6)
2016 (6)
2018 (5)
2014 (4)
2017 (4)
2012 (3)
2011 (3)
2015 (2)
2010 (2)
2026 (2)
2009 (1)
2007 (1)

Lab affiliation

McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX, USA (2)
The Gene Lay Institute of Immunology and Inflammation Harvard Medical School and Brigham and Women's Hospital (2)
1McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX, USA (1)
1Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China 2Academy of Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China 3Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175, USA (1)
Center for Addiction Research Department of Pharmacology and Toxicology The University of Texas Medical Branch Galveston, TX 77555 (1)
Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (1)
Department of Chemical Engineering, University of Texas at Austin, Austin, Texas, USA (1)
Department of Medicine, Division of Cardiology, University of of Colorado Anschutz Medical Campus, Aurora, CO Consortium for Fibrosis Research & Translation, University of of Colorado Anschutz Medical Campus, Aurora, CO (1)
Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309-0347 USA (1)
Department of Pathology, University of Cambridge, Tennis Court Road, Cambridge CB2 1QP (1)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 627-706, South Korea (1)
Director (1)
Dr. Christina Ludwig Bavarian Center for Biomolecular Mass Spectrometry Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Gene Expression Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA (1)
Head of the Crick Mass Spectrometry Proteomics Platform (1)
Howard Hughes Medical Institute, Department of Chemistry and Chemical Biology, Department of Physics, Harvard University, Cambridge, MA 02138, USA (1)
Jiangsu Academy of Agricultural Sciences (1)
Leibniz Institute on Aging, Fritz Lipmann Institute (FLI) (1)
McKetta Department of Chemical Engineering, The University of Texas at Austin, USA (1)
National Key Discipline Laboratory, Department of Nutrition and Food Hygiene, School of Public Health, Harbin Medical University, Harbin, P. R. China (1)
Professor, Department of Biochemistry, Molecular Biology and Biophysics Director, Center for Mass Spectrometry and Proteomics (1)
School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (1)
School of Medicine, College of Medicine, Fu Jen Catholic University, New Taipei, Taiwan (1)
Section for Evolutionary Genomics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark (1)
State Key Lab of Plant Genomics Institute of Genetics and Developmental Biology Chinese Academy of Sciences, Beijing 100101, China Chaoyang District, Beichen West Road, Campus #1, No. 2 (1)
State Key Laboratory of Medical Molecular Biology, Institute of Basic Medical Sciences Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China (1)

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NanoString analysis of a rat liver mRNA panel following TCDD treatment

Profiling of mRNA abundances with high-throughput platforms such as microarrays and RNA-Seq has become an important tool in both basic and biomedical research. However these platforms remain prone to systematic errors, and have challenges in clinical and industrial application. As a result it is sta...

ORGANISM(S): Rattus norvegicus

2013-12-31 | E-GEOD-43251 | biostudies-arrayexpress

Weighted gene coexpression network analysis identifies hub genes related to KRAS mutant lung adenocarcinoma.

Not available

S-EPMC7593058 | biostudies-literature

M. sedula transcriptional response under "strict" carbon-limited autotrophy compared to carbon "rich" autotrophy and heterotrophy

Metallosphaera sedula is an extremely thermoacidophilic archaeon that grows heterotrophically on peptides, and chemolithoautotrophically on hydrogen, sulfur, or reduced metals as energy sources. During autotrophic growth, carbon dioxide is incorporated into cellular carbon via the 3-hydroxypropionat...

ORGANISM(S): Metallosphaera sedula DSM 5348

2013-03-05 | E-GEOD-39944 | biostudies-arrayexpress

Mechanism of interventional effect and targets of Zhuyu Pill in regulating and suppressing colitis and cholestasis

Zhuyu pill (ZYP) is a traditional Chinese medicine prescription composed of two drugs, Coptis chinensis Franch. and Tetradium ruticarpum (A. Jussieu) T. G. Hartley, and is commonly used in the clinical treatment of diseases of the digestive system. However, the mechanism underly...

2022-11-02 | MTBLS4980 | MetaboLights

Not available

S-EPMC10767351 | biostudies-literature

A Facile Approach to Upconversion Crystalline CaF₂:Yb³⁺,Tm³⁺@mSiO₂ Nanospheres for Tumor Therapy.

Not available

S-EPMC5072527 | biostudies-literature

FeS@BSA Nanoclusters to Enable H2S-Amplified ROS-Based Therapy with MRI Guidance.

Not available

S-EPMC7141047 | biostudies-literature

TMT-labeling Proteomics of Papillary Thyroid Carcinoma Reveal Invasive Biomarkers.

Not available

S-EPMC7477402 | biostudies-literature