Harris S S - OmicsDI

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Unknown (6643)
Transcriptomics (164)
Proteomics (70)
Genomics (38)
Metabolomics (10)
Genomic (7)
Clinical (2)
Models (1)

Organisms

Homo sapiens (113)
Andropogon gerardi (62)
Bacteria (62)
Mus musculus (22)
Bos taurus (10)
Chlamydomonas reinhardtii (9)
Saccharomyces cerevisiae (6)
Penicillium chrysogenum (3)
Zea mays (3)
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Scophthalmus maximus (2)
Anopheles coluzzii (2)
Oryza sativa Japonica Group (2)
Citrobacter rodentium (2)
Salmonella enterica subsp. enterica serovar Paratyphi A (1)
Picea sitchensis (1)
Shewanella oneidensis MR-1 (1)
Plasmodium knowlesi (1)
Salmonella enterica (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)
Salmonella enterica subsp. enterica serovar Typhi (1)
Macaca mulatta (1)
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Ovis aries (1)
Caenorhabditis elegans (1)
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Arabidopsis thaliana (1)
Salix x rubra (1)

Organisms

Salix x rubra (1)
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Mus musculus (1)

Repository

biostudies-arrayexpress (173)
pride (62)
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geo (3)
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Tissue

Cell culture (9)
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Disease

Normal (4)
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CHRONIC LYMPHOCYTIC LEUKEMIA (1)
NORMAL (1)
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EAE-resistant (1)
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Diabetes mellitus (1)
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Embryonal rhabdomyosarcoma (1)
Fibrosarcoma (1)
Gingivitis (1)
Head and neck cancer (1)
Human cytomegalovirus infection (1)
Huntington Disease (1)
Lung carcinoma (1)
Malignant mesothelioma (1)

Technology Type

Mass Spectrometry (62)
Shotgun proteomics (37)
Bottom-up proteomics (14)
Mass spectrometry (6)
Data-independent acquisition (4)
SWATH MS (4)
Data-dependent acquisition (3)
NMR spectroscopy assay (2)
NMR spectroscopy (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Gel-based experiment (2)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2500 (1)
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HDMSE (1)
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Top-down proteomics (1)

Instrument Platform

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Scanning hardware (3)
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Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
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Q Exactive (2)
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Nuclear Magnetic Resonance (NMR) - (2)
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Microcentrifuge (1)
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GenePix 4000B [Axon Instruments] (1)
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Bruker (1)
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Publication Date

2010 (37)
2012 (28)
2014 (20)
2015 (18)
2011 (18)
2013 (15)
2025 (12)
2018 (11)
2023 (10)
2016 (10)
2022 (10)
2021 (9)
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2020 (8)
2007 (8)
2026 (8)
2008 (6)
2005 (6)
2009 (5)
2017 (4)
2019 (3)
2006 (2)

UNIPROT ID/AC

10116.ENSRNOP00000001467 (3)
10116.ENSRNOP00000004127 (3)
10116.ENSRNOP00000028732 (3)
10116.ENSRNOP00000031360 (3)
10116.ENSRNOP00000050143 (3)
10116.ENSRNOP00000054637 (3)
10116.ENSRNOP00000061650 (3)
10116.ENSRNOP00000064401 (3)
10116.ENSRNOP00000066126 (3)
10116.ENSRNOP00000067288 (3)
1433B_RAT (3)
1433E_RAT (3)
1433F_RAT (3)
1433G_RAT (3)
1433T_RAT (3)
1433Z_RAT (3)
2ABA_RAT (3)
3HIDH_RAT (3)
4F2_RAT (3)
6PGL_RAT (3)
A0A096MIX2_RAT (3)
A0A096MJ94_RAT (3)
A0A096MJP9_RAT (3)
A0A0G2JTH1_RAT (3)
A0A0G2JU96_RAT (3)
A0A0G2JX25_RAT (3)
A0A0G2JYI0_RAT (3)
A0A0G2K0E0_RAT (3)
A0A0G2K0J4_RAT (3)
A0A0G2K160_RAT (3)

CHEBI ID

CHEBI:27570 (3)
CHEBI:18186 (3)
CHEBI:37684 (3)
CHEBI:24898 (3)
CHEBI:17268 (3)
CHEBI:78320 (3)
CHEBI:16737 (3)
CHEBI:16919 (3)
CHEBI:15354 (3)
CHEBI:30769 (3)
CHEBI:17992 (2)
CHEBI:16113 (2)
CHEBI:26271 (2)
CHEBI:18132 (2)
CHEBI:49033 (2)
CHEBI:25094 (2)
CHEBI:18237 (2)
CHEBI:16797 (2)
CHEBI:16997 (2)
CHEBI:26986 (2)
CHEBI:17234 (2)
CHEBI:28300 (2)
CHEBI:15676 (2)
CHEBI:17724 (2)
CHEBI:17562 (2)
CHEBI:25017 (2)
CHEBI:30794 (2)
CHEBI:15428 (2)
CHEBI:17754 (2)
CHEBI:28044 (2)

Metabolite Name

Proline (3)
Lysine (3)
Glutamate (3)
Phenylalanine (3)
Tyrosine (3)
Creatinine (3)
Glutamine (3)
Citrate (3)
Alanine (3)
Pantothenate (2)
Cholesterol (2)
Tryptophan (2)
Taurine (2)
Serine (2)
Sarcosine (2)
Malate (2)
Fumarate (2)
Cysteine (2)
Arginine (2)
Allantoin (2)
Adenine (2)
3-phosphoglycerate (2)
Histidine (2)
Urea (2)
Mannose (2)
Threonine (2)
Methionine (2)
Glucose (2)
Choline (2)
Creatine (2)

First Public Date

2024 (1)
2021 (1)
2020 (1)
2014 (1)
2013 (1)

Modelling Approach

Boolean model (1)

Study status

Recruiting (1)
Completed (1)

Lab affiliation

University of Victoria (10)
Novartis Institute of Biomedical Research, Cambridge, MA (2)
1Seer, Inc., Redwood City, CA 94065, USA; 4Center for Nanomedicine and Department of Anesthesiology, Brigham and Women’s Hospital, Harvard Medical School, Boston, MA 02115, USA (1)
Animal Sciences (1)
Bavarian Center for Biomolecular Mass Spectrometry, TUM School of Life Sciences, Technical University Munich (TUM), Gregor-Mendel-Straße 4, 85354 Freising, GERMANY (1)
Biochemistry and Molecular Biology, Munger Lab, University of Rochester, USA (1)
Boston University School of Medicine Center for Biomedical Mass Spectrometry (1)
Centenary Institute, Newtown, New South Wales, Australia (1)
Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK (1)
Chemistry Department, King's College London (1)
Department of Immunology & Microbiology, Scripps Research, USA (1)
Department of Immunology, Weizmann Institute of Science, Rehovot, Israel (1)
Department of Internal Medicine, School of Medicine, Kyungpook National University, Kyungpook National University Hospital, Daegu, Republic of Korea (1)
Department of Internal Medicine, School of Medicine, Kyungpook National University, Kyungpook National University Hospital, Daegu, Republic of Korea (1)
Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK. (1)
Dept of Experimental Medical Science, Wallenberg Neuroscience Center, Lund University, Sweden (1)
Discovery Proteomics University of Oxford Target Discovery Institute (1)
EDyP (1)
ERA Chair in Gas Fermentation Technologies, Institute of Technology, University of Tartu (1)
European Molecular Biology Laboratory (1)
Faculty of Human and Medical Science (1)
IRCCS Fondazione Bietti, Rome (1)
Institute of Plant Biology and Biotechnology, University of Muenster, Germany (1)
Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB United Kingdom MOE Key Laboratory of Evolution and Marine Biodiversity, Frontiers Science Center for 10 Deep Ocean Multispheres and Earth System & College of Marine Life Sciences, Ocean University of China, Qingdao 266003, China. (1)
Instituto de Bioquimica Vegetal y Fotosintesis CSIC (1)
Jiangsu Academy of Agricultural Sciences (1)
Marten Lab Chemical, Biochemical, and Environmental Engineering University of Maryland Baltimore County Baltimore, MD 21250 (1)
Mass Spectrometry Research Center Departments of Biochemistry, Chemistry, Pharmacology, Medicine Vanderbilt University Nashville TN, USA (1)
McKusick Nathans Institute of Genetics and Departments of Biological Chemistry, Pathology and Oncology, Johns Hopkins University School of Medicine, Baltimore, MD 21205 (1)
Member, St. Jude Faculty / Director, Division of Experimental Hematology / Wall Street Committee Endowed Chair St. Jude Children's Reserch Jospital Memphis, TN 38105 (1)

IsPrivate

False (1)

Classification

bacteria (1)

Modification

0.984016 (1)
57.021464 (1)

Study type

Transcription profiling by array (97)
RNA-seq of coding RNA (22)
MicroRNA profiling by array (16)
ChIP-seq (8)
Comparative genomic hybridization by array (7)
Unknown experiment type (5)
Other (3)
Methylation profiling by high throughput sequencing (3)
RNA-seq of non coding RNA (3)
Methylation profiling by array (2)
Interventional (2)
Differential (1)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)

Release Date

2021 (684)
2023 (671)
2022 (652)
2025 (636)
2024 (577)
2020 (506)
2019 (440)
2018 (369)
2017 (329)
2015 (325)
2016 (320)
2014 (267)
2012 (203)
2013 (194)
2011 (154)
2010 (148)
2009 (86)
2026 (83)
2007 (45)
2008 (42)
2006 (28)
2005 (19)
2004 (12)
2003 (9)
2002 (5)
2000 (5)
1999 (3)
2001 (2)
1998 (2)

Location

Malaysia (1)
Australia (1)

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Comparative Genomic Analysis of PhoP Regulon in S. Typhi and S. Typhimurium

Transcriptional profiling of three sequenced S. enterica strains: S. Typhimurium LT2, S. Typhi CT18, and S. Typhi Ty2 in PhoP-inducing and non-inducing conditions in vitro, and compared these results to profiles of phoP-/Q- mutants derived from S. Typhimurium LT2 and S. Typhi Ty2. Two-condition expe...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

2010-05-06 | E-GEOD-17670 | biostudies-arrayexpress

Prediction driven functional annotation of hypothetical proteins in the major facilitator superfamily of S. aureus NCTC 8325.

Not available

S-EPMC5290667 | biostudies-literature

Detection of the Nav channel kdr-like mutation and modeling of factors affecting survivorship of Culex quinquefasciatus mosquitoes from six areas of Harris County (Houston), Texas, after permethrin field-cage tests.

Not available

S-EPMC7714350 | biostudies-literature

Stereochemistry modulates the stability of reduced interstrand cross-links arising from R- and S-alpha-CH3-gamma-OH-1,N2-propano-2'-deoxyguanosine in the 5'-CpG-3' DNA sequence.

Not available

S-EPMC2581467 | biostudies-literature

A Signaling Lipid Associated with Alzheimerâ€™s Disease Promotes Mitochondrial Dysfunction

Fundamental changes in the composition and distribution of lipids within the brain are believed to contribute to the cognitive decline associated with Alzheimerâ€™s disease (AD). The mechanisms by which these changes in lipid composition affect cellular function and ultimately cognition are not well...

ORGANISM(S): Saccharomyces cerevisiae

2016-01-21 | E-GEOD-40814 | biostudies-arrayexpress

Early Clinical and Radiographic Outcomes of Total Hip Arthroplasty with DELTA ST-C Cup and MINIMA S Stem.

Not available

S-EPMC10058963 | biostudies-literature

Characterization of Three Novel Viruses from the Families Nyamiviridae, Orthomyxoviridae, and Peribunyaviridae, Isolated from Dead Birds Collected during West Nile Virus Surveillance in Harris County, Texas.

Not available

S-EPMC6832935 | biostudies-literature

A combination of the K-L and S-P approaches for treating acetabular posterior wall factures accompanied by femoral head fractures with open reduction and internal fixation.

Not available

S-EPMC9092786 | biostudies-literature

Impact of the V410L kdr mutation and co-occurring genotypes at kdr sites 1016 and 1534 in the VGSC on the probability of survival of the mosquito Aedes aegypti (L.) to Permanone in Harris County, TX, USA.