Hata A N AN - OmicsDI

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Unknown (338)
Transcriptomics (127)
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Streptomyces coelicolor (37)
Homo sapiens (35)
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cellular organisms (3)
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biostudies-arrayexpress (138)
pride (9)
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Publication Date

2010 (32)
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UNIPROT ID/AC

3MGH_STRCO (3)
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CHEBI ID

CHEBI:1230 (1)
CHEBI:1307 (1)
CHEBI:140940 (1)
CHEBI:140942 (1)
CHEBI:140943 (1)
CHEBI:140945 (1)
CHEBI:140947 (1)
CHEBI:140949 (1)
CHEBI:140951 (1)
CHEBI:140958 (1)
CHEBI:141061 (1)
CHEBI:141070 (1)
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CHEBI:141076 (1)
CHEBI:141078 (1)
CHEBI:141079 (1)
CHEBI:141080 (1)
CHEBI:141081 (1)
CHEBI:141082 (1)
CHEBI:141083 (1)
CHEBI:141084 (1)
CHEBI:141085 (1)
CHEBI:141086 (1)
CHEBI:141087 (1)
CHEBI:141088 (1)
CHEBI:141089 (1)
CHEBI:141090 (1)

Metabolite Name

Adenosine (2)
Cholesterol (2)
D-Fructose (2)
D-Glucose (2)
D-Maltose (2)
D-Ribose (2)
Fumaric acid (2)
Guanine (2)
L-Cysteine (2)
L-Glutamine (2)
L-Lysine (2)
L-Malic acid (2)
L-Phenylalanine (2)
L-Serine (2)
L-Threonine (2)
L-Tryptophan (2)
L-Tyrosine (2)
L-Valine (2)
Succinic acid (2)
Uridine (2)
(22R,25R)-16¦Â-H-22a-N-Spirosol-3¦Â-ol-5-ene-3-O-rhamnosyl(1¡ú2)[rhamnosyl(1¡ú4)]glucoside (1)
(23S)-3¦Â-hydroxydammara-21-oic acid 21,23-lactone (1)
(2E)-3-(4-Hydroxyphenyl)-N-[2-(4-hydroxyphenyl)ethyl]-2-propenamide (1)
(2Z)-N-[2-(3,4-Dihydroxyphenyl)-2-hydroxyethyl]-3-(4-methoxyphenyl)-2-propenamide (1)
(5-8)-Hydroxy-1-(hydroxylmethoxyphenyl)-N2,N3-bis(4-hydroxyphenethyl)-(5-8)-dimethoxy-1,2-dihydronaphthalene-2,3-dicarboxamide (1)
(7Z)-Hexadecenoic acid (1)
(9Z,11E)-Octadecadienoic acid (1)
(S)-2-Phenyloxirane (1)
(S)-Indoximod (1)
1,14-Tetradecanedioic Acid (1)

Study type

Transcription profiling by array (95)
ChIP-seq (11)
RNA-seq of coding RNA (7)
High-throughput sequencing (6)
Methylation profiling by array (6)
Genotyping by array (4)
Comparative genomic hybridization by array (4)
Unknown experiment type (2)
ChIP-chip by array (2)
One-color microarray (1)

Release Date

2024 (39)
2023 (38)
2021 (38)
2010 (38)
2022 (38)
2020 (34)
2019 (28)
2018 (26)
2015 (25)
2016 (23)
2012 (23)
2013 (22)
2025 (21)
2014 (17)
2011 (13)
2009 (13)
2008 (13)
2017 (12)
2026 (4)
2007 (3)
2006 (2)
2005 (2)
2000 (2)
2004 (1)
2003 (1)

Lab affiliation

Calpain Project Department of Advanced Science for Biomolecules Igakuken (Tokyo Metropolitan Institute of Medical Science) 2-1-6 Kamikitazawa, Setagaya-ku Tokyo 156-8506, Japan (1)
Circadian Clock Project, Tokyo Metropolitan Institute of Medical Science, Kamikitazawa 2-1-6, Setagaya-ku, Tokyo, 156-8506, Japan. (1)
MGH Cancer Center (1)
Medical Proteomics Laboratory, The Institute of Medical Science, The University of Tokyo, Japan (1)
Professor, Department of Laboratory Medicine, UCSF (1)
Program in Molecular and Integrative Physiological Sciences Harvard School of Public Health 665 Huntington Avenue Building 2, Room 221 Boston, MA 02115 USA (1)
Roy J. Carver Dept. of Biochemistry, Biophysics, and Molecular Biology Iowa State University Ames, IA USA (1)
ZMBH University Heidelberg Im Neuenheimer Feld 282 69120 Heidelberg Germany (1)
Zentrum für Molekulare Biologie, Universität Heidelberg, DKFZ-ZMBH Allianz, Heidelberg 69120, Germany (1)

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Seed Metabolome Analysis of a Transgenic Rice Line Expressing Cholera Toxin B-subunit

Rice (Oryza sativa L.) is a candidate crop for production of plant-based vaccines by genetic engineering technologies. MucoRice-CTB has been developed as a rice-seed-based vaccine against cholera by transgenic expression of modified cholera toxin B-subunit (CTB) under the RNA interference (RNAi)-med...

2017-08-30 | MTBLS437 | MetaboLights

An improved method for the isolation of endometrial epithelial and stromal cells from the total hysterectomy specimen

We aimed to improve the efficiency of isolating endometrial epithelial and stromal cells (EMECs and EMSCs) from hysterectomy specimens. We revealed by immunohistochemical staining that the large tissue fragments remaining after collagenase treatment, which are usually discarded after the first filtr...

ORGANISM(S): Homo sapiens

2016-06-14 | E-GEOD-73090 | biostudies-arrayexpress

Identification of baseline gene expression signatures predicting therapeutic responses to three biologic agents in rheumatoid arthritis: a retrospective observational study

The aim of this study was to identify the specific molecular biological features predicting the therapeutic outcomes of three bDMARDs, infliximab (IFX), tocilizumab (TCZ), and abatacept (ABT) by studying blood gene expression signature of patients prior to biologic treatment in a unified test platfo...

ORGANISM(S): Homo sapiens

2016-07-21 | E-GEOD-78068 | biostudies-arrayexpress

An analysis of genomic structural alteration in three human ES cell lines.

To elucidate frequencies of genomic structural alterations, we performed an analysis using a SNP genotyping array (Illumina HumanCytoSNP-12 v2.1 DNA Analysis BeadChip Kit) for three human ES cell lines, namely, SEES-1, SEES-2, and SEES-3. Samples were collected after 4 to 60 passages to detect struc...

ORGANISM(S): Homo sapiens

2015-05-20 | E-GEOD-54576 | biostudies-arrayexpress

A novel TP63 variant in a patient with ankyloblepharon-ectodermal defect-cleft lip/palate syndrome and Rapp-Hodgkin syndrome-like ectodermal dysplasia.

Not available

S-EPMC9123001 | biostudies-literature

Two-component signal transduction systems in Streptomyces and related organisms

Two component sensor-response regulator systems (TCSs) are very common in the genomes of the Streptomyces species that have been fully sequenced to date. It has been suggested that this large number is an evolutionary response to the variable environment that Streptomyces encounter in soil. Notwiths...

ORGANISM(S): Streptomyces cattleya

2010-06-24 | E-GEOD-13621 | biostudies-arrayexpress

Genome-wide distribution of AdpA, a global regulator for secondary metabolism and morphological differentiation in Streptomyces, revealed the extent and complexity of the AdpA regulatory network.

This SuperSeries is composed of the following subset Series: GSE33992: Streptomyces griseus transcriptome analysis in solid culture with delta adpA, encoding a global transcriptional regulator involved in morphological differentiation and secondary metabolism GSE33993: Streptomyces griseus transcrip...

ORGANISM(S): Streptomyces griseus

2012-04-03 | E-GEOD-33994 | biostudies-arrayexpress

Impact of EML4-ALK Variant on Resistance Mechanisms and Clinical Outcomes in ALK-Positive Lung Cancer.

Not available

S-EPMC5903999 | biostudies-literature

MRI-compatible manipulator with remote-center-of-motion control.

Not available

S-EPMC2815332 | biostudies-literature

Dynamic Au-C σ-Bonds Leading to an Efficient Synthesis of [n]Cycloparaphenylenes (n = 9-15) by Self-Assembly.

Not available

S-EPMC9400051 | biostudies-literature