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Transcriptomicsexpression of SATs
Expression of the sense-antisense transcripts (SATs). Methods: The sequences of 60mer DNA specific to the sense and antisense genes were chosen by K.K. DNAFORM (Japan), and Agilent Technologies manufactured custom oligo DNA microarray chips by using this information. RNA was labeled and hybridized u...
ORGANISM(S): Mus musculus 
2010-06-10 | E-GEOD-2185 | biostudies-arrayexpress
TranscriptomicsThe time-series gene expression data in PMA stimulated THP-1
(1) qPCR Gene Expression Data The THP-1 cell line was sub-cloned and one clone (#5) was selected for its ability to differentiate relatively homogeneously in response to phorbol 12-myristate-13-acetate (PMA) (Sigma). THP-1.5 was used for all subsequent experiments. THP-1.5 cells were cultured in ...
ORGANISM(S): Homo sapiens 
2010-06-19 | E-GEOD-15528 | biostudies-arrayexpress
TranscriptomicsChemosensitivity prediciton in esophageal cancer cell line using cDNA microarray
A total of 20 KYSE human esophageal squamous cell carcinoma cell lines (KYSE-30, -140, -150, -170, -180, -200, -220, -350, -410, -450, -510, -520, -590, -770, -850, -890, -1170, -1190, -1250, and -2270) and a non-cancerous esophageal epithelial cell (HEEC-1)were kindly provided by Dr. Y. Shimada (Ky...
ORGANISM(S): Homo sapiens 
2010-06-05 | E-GEOD-2454 | biostudies-arrayexpress
TranscriptomicsRNA Subcellular CAGE Localization from ENCODE/RIKEN
This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Piero Carninci mailto:carninci@riken.jp). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). This track show...
ORGANISM(S): Homo sapiens 
2011-12-16 | E-GEOD-34448 | biostudies-arrayexpress
TranscriptomicsAnalysis of the DNA methylome and transcriptome in granulopoiesis reveal timed changes and dynamic enhancer methylation [expression]
The study investigated the changes in DNA-methylation and gene expression during granulopoiesis. To this end CMP, GMP, PMC and PMN cell populations were isolated by FACS from bonemarrow from healty donors and analysed by CAGE as well as expression and DNA microarrays total RNA was isolated from CMP,...
ORGANISM(S): Homo sapiens 
2014-04-29 | E-GEOD-49883 | biostudies-arrayexpress
TranscriptomicsMacrophage response to lipopolysaccharide
Temporal analysis of bone marrow derived macrophages after 10 ug/ml lipopolysaccharide stimulation. C57BL6, C3H/ARC, BalbC and C3H/HeJ mouse strains analyzed. Each time point stimulated with 10ug/ml LPS from Salmonella minnesota for the time indicated. The RNA from each BMM stimulated time point was...
ORGANISM(S): Mus musculus 
2010-07-01 | E-GEOD-3148 | biostudies-arrayexpress
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