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Bacillus thuringiensis serovar kurstaki str. HD-1 (2)
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biostudies-arrayexpress (3245)
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Refractory cytopenia with multilineage dysplasia and ringed sideroblasts (1)
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IV (1)
"colon adenocarcinoma, acterial infection" (1)
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Technology Type

Mass spectrometry (47)
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ILLUMINA, Illumina HiSeq 2000 (3)
Illumina HiSeq 2500, ILLUMINA (2)
ILLUMINA, Illumina HiSeq 2500 (2)
HiSeq X Ten, ILLUMINA (2)
Illumina HiSeq 2500, Illumina HiSeq 2000 (2)
Illumina MiSeq (2)
Illumina DASL Assay (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 2000, Illumina (1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Infinium_OmniExpress-24v1.0 (1)
NextSeq 550, ILLUMINA (1)
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Instrument Platform

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PC (2)
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N/a (2)
TruSeq Stranded Total RNA kit (1)
Norgen Kit (Biotek Corp) (1)
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GeneChip Clariom S mouse array cartridge and Affymetrix GeneTitan MultiChannel System (1)
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2003 (5)

UNIPROT ID/AC

Q9H426 (2)
Q9Y2U9 (2)
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P33402 (2)
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Q15831 (2)
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Q9GZN7 (2)

ENSEMBL ID

ENSG00000170477 (2)
ENSG00000229353 (1)
ENSG00000247315 (1)
ENSG00000147251 (1)

CHEBI ID

CHEBI:15354 (40)
CHEBI:15891 (36)
CHEBI:16919 (35)
CHEBI:17268 (33)
CHEBI:15366 (33)
CHEBI:30769 (33)
CHEBI:15428 (32)
CHEBI:16737 (32)
CHEBI:30751 (31)
CHEBI:18132 (27)
CHEBI:24898 (27)
CHEBI:28044 (27)
CHEBI:16449 (27)
CHEBI:18012 (27)
CHEBI:17368 (27)
CHEBI:27266 (26)
CHEBI:17750 (26)
CHEBI:32816 (26)
CHEBI:18237 (25)
CHEBI:18186 (25)
CHEBI:16704 (25)
CHEBI:27570 (24)
CHEBI:16811 (24)
CHEBI:28300 (24)
CHEBI:15741 (24)
CHEBI:27897 (24)
CHEBI:20067 (24)
CHEBI:26986 (23)
CHEBI:16856 (22)
CHEBI:17234 (22)

Metabolite Name

Choline (32)
Creatine (30)
Creatinine (29)
Glycine (27)
Taurine (25)
L-Valine (22)
L-Isoleucine (22)
L-Alanine (21)
L-Phenylalanine (21)
L-Glutamine (20)
Uridine (20)
L-Leucine (20)
L-Tyrosine (20)
Betaine (19)
Citric acid (19)
Alanine (19)
Hypoxanthine (19)
L-Lactic acid (18)
L-Threonine (18)
D-Glucose (17)
Acetic acid (17)
L-Histidine (17)
Isoleucine (17)
Glucose (17)
Formic acid (16)
Valine (16)
ADP (16)
L-Glutamic acid (16)
L-Methionine (16)
Glycerol (15)

First Public Date

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2019 (58)
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2015 (53)
2013 (21)

Modelling Approach

Constraint-based model (1)

Study status

Completed (6)
Not provided (2)
Recruiting (2)
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Lab affiliation

University of Victoria (42)
Institute of Molecular Biology (IMB), 55128 Mainz, Germany; Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg University, 55128 Mainz, Germany (7)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (5)
Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes (URMITE) UMR 6236, Faculté de médecine 27 Bd Jean Moulin 13385 MARSEILLE Cedex 05 FRANCE (4)
Institut Pasteur (4)
VIB-UGent Center for Medical Biotechnology, VIB, Ghent, Belgium (3)
Industrial Biotechnology & Biocatalysis Group, Biotechnology Laboratory, School of Chemical Engineering, National Technical University of Athens, Athens, Greece (3)
Masaryk University, Faculty of Science (3)
Institute of Dendrology Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland (2)
1VIB Center for Medical Biotechnology, VIB, Ghent, 9052, Belgium 2Department of Biomolecular Medicine, Ghent University, Ghent, 9052, Belgium (2)
1The Rappaport Faculty of Medicine and Research Institute, Haifa 3109601, Israel; 2Network Biology Research Laboratories, Technion-Israel Institute of Technology, Haifa 3200003, Israel (2)
The Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), Institutes of Basic Medicine and Cancer (IBMC), Chinese Academy of Sciences, Hangzhou 310022, China (2)
VIB Center for Medical Biotechnology, VIB, Ghent, B9052, Belgium Department of Biomolecular Medicine, Ghent University, Ghent, B9052, Belgium (2)
Research Institute for Medicines (iMed.ULisboa), Faculty of Pharmacy, Universidade de Lisboa, Lisbon, Portugal. (2)
Ghent University, VIB (2)
Department of Cell and Chemical Biology, Leiden University Medical Center, Einthovenweg 20, 2333 ZC, Leiden, The Netherlands (2)
VIB Department of Medical Protein Research, UGent Proteome Analysis and Bioinformatics Unit A. Baertsoenkaai 3 B9000 Gent Belgium (2)
University of Geneva, Department of Microbiology and Molecular Medicine (2)
School of Basic Medical Science, Peking University, China (2)
Kuleuven; Department: Biologie; unit: Moleculaire Biotechnologie van Planten en Micro-organismen (2)
Institut Pasteur 25 Rue du Docteur Roux Paris 75015 (2)
Associate Professor, University of Washington (2)
Institute of Biochemistry and Biotechnology, Martin-Luther-University Halle-Wittenberg, Kurt-Mothes-Str. 3a, 06120 Halle (Saale), Germany (2)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (2)
The George Washington University (2)
Dept of Experimental Medical Science, Wallenberg Neuroscience Center, Lund University, Sweden (2)
Institute of Biochemistry and Biotechnology, Martin Luther University Halle-Wittenberg, Weinbergweg 22, 06120 Halle (Saale), Germany (2)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (2)
Institut Pasteur Unité des Interactions Bactéries-Cellules, Inserm U604, INRA USC2020 25 rue du Dr. Roux 75015 Paris France (2)
Comparative Perinatal Development - Department of Veterinary Sciences - Faculty of Pharmaceutical, Biomedical and Veterinary Sciences - University of Antwerp (1)

Keyword

Colonoscopy (3)
Spigelman (1)
Serrated Polyposis Syndrome (1)
Sesil serrated lesion (1)
Endoscopic surveillance (1)
Narrow band imaging (1)
Optical biopsy (1)
Accuracy (1)
Detection Yield (1)
Adenoma detection rate (1)
Chromoendoscopy (1)
Surveillance (1)
Adenoma (1)
CRC (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

bacteria (4)
viruses (2)
protozoa (2)
fungi (1)

Modification

-17.026549 (5)
42.010565 (5)
15.994915 (5)
4x(15)N labeled L-arginine (3)
45.029395 (2)
58.005479 (2)
57.021464 (2)
47.036105 (1)
6.020129 (1)
56.026215 (1)
59.036279 (1)
10.008269 (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
2x(15)N labeled L-lysine (1)
4 (1)
+3amu) (1)

Study type

Transcription profiling by array (1832)
RNA-seq of coding RNA (425)
ChIP-seq (178)
Methylation profiling by array (128)
Comparative genomic hybridization by array (117)
ChIP-chip by tiling array (62)
RNA-seq of non coding RNA (58)
Genotyping by array (50)
Other (46)
Unknown experiment type (43)
RNA-seq of coding RNA from single cells (42)
Transcription profiling by tiling array (34)
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DNA-seq (24)
Cell line - High-throughput sequencing (21)
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Transcription profiling by RT-PCR (14)
MicroRNA profiling by array (13)
RNA-seq of total RNA (10)
Animal - High-throughput sequencing (9)
Proteomic profiling by array (9)
Human - High-throughput sequencing (6)
Cell line - One-color microarray (6)
ATAC-seq (5)
Genotyping by high throughput sequencing (5)
Transcription profiling by SAGE (4)
High-throughput sequencing (4)
RNAi profiling by array (4)
MicroRNA profiling by high throughput sequencing (4)
Cell line - Single-cell sequencing (3)

Release Date

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1998 (16)
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1999 (10)
1997 (2)

Location

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Spain (3)
Netherlands (3)
Denmark (2)
Italy (2)
United States (2)
United Kingdom (2)
Singapore (1)
India (1)
Israel (1)

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Expression data from of HD-iPSC and CON-iPSC neuron derivatives

Compared the global gene expression profiles of HD- and CON-iPSC-derived neurons We used microarrays to detail the global programme of gene expression for comparing the global gene expression profiles of HD- and CON-iPSC-derived neurons and facilitating studies of medium spiny neurons (MSN)-degenera...

ORGANISM(S): Homo sapiens

2015-09-02 | E-GEOD-59051 | biostudies-arrayexpress

HDAC inhibition imparts beneficial transgenerational effects in Huntington's disease mice via altered DNA and histone methylation

Increasing evidence has demonstrated that epigenetic factors can profoundly influence gene expression and, in turn, influence resistance or susceptibility to disease. Epigenetic drugs, such as histone deacetylase (HDAC) inhibitors, are finding their way into clinical practice, although their exact m...

ORGANISM(S): Homo sapiens

2015-04-10 | E-GEOD-67733 | biostudies-arrayexpress

mRNA-Seq Expression profiling of human post-mortem BA9 brain tissue for Huntington's Disease and neurologically normal individuals

Huntingtonâ€™s Disease (HD) is a devastating neurodegenerative disorder that is caused by an expanded CAG trinucleotide repeat in the Huntingtin (HTT) gene. Transcriptional dysregulation in the human HD brain has been documented but is incompletely understood. Here we present a genome-wide analysis ...

ORGANISM(S): Homo sapiens

2015-12-08 | E-GEOD-64810 | biostudies-arrayexpress

Klebsiella pneumoniae strain:KLMG-HD-125 | isolate:KLMG-HD-125

Klebsiella pneumoniae strain:KLMG-HD-125 | isolate:KLMG-HD-125 Genome sequencing

PRJNA1369632 | ENA

PREDICT-HD Huntington Disease Study

The purpose of this project is to make clinical measurements from the PREDICT-HD consortium available through the dbGaP mechanism. The phenotype data will first be converted into a community open standard and subsequently exported to dbGaP for archival and open access distribution of the results ...

phs000222 | dbGaP

Oryzias latipes strain:Hd-rR

PRJNA325079 | ENA

Oryzias latipes strain:Hd-rR

Oryzias latipes Hd-rR Genome sequencing project

PRJDA51437 | ENA

Bacillus thuringiensis HD-771

Bacillus thuringiensis HD-771 Genome Sequencing

PRJNA171845 | ENA

Bacillus thuringiensis HD-789

Bacillus thuringiensis HD-789 Genome sequencing

PRJNA171844 | ENA