He J J - OmicsDI

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Unknown (46209)
Proteomics (1065)
Transcriptomics (411)
Models (333)
Genomics (193)
Metabolomics (107)
Multiomics (9)
Genomic (7)
Other (5)

Organisms

Homo sapiens (637)
Mus musculus (182)
Rattus norvegicus (33)
Arabidopsis thaliana (29)
Saccharomyces cerevisiae (28)
Mammalia (20)
Rattus (18)
Oryctolagus cuniculus (18)
Escherichia coli (17)
Drosophila melanogaster (14)
cellular organisms (13)
Cavia porcellus (9)
Eukaryota (7)
Canis lupus familiaris (6)
Arabidopsis (5)
Halobacterium salinarum (5)
Mus (5)
Ovis aries (5)
Methanosarcina barkeri (4)
Xenopus laevis (4)
Embryophyta (3)
Ostreococcus tauri (2)
Neurospora crassa (2)
Mycobacterium tuberculosis (2)
Chordata (2)
Lactococcus lactis (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Amniota (1)
Spodoptera frugiperda (1)
Caulobacter vibrioides (1)

Organisms

Mus musculus (6)
Dugong dugon (3)
Oncorhynchus mykiss (2)
Arabidopsis thaliana (2)
Homo sapiens (2)
Jasminum sambac (1)
Populus x canadensis (1)
Juglans regia (1)
Zea mays subsp. mays (1)

Repository

pride (676)
biostudies-arrayexpress (465)
BioModels (333)
iProX (266)
EGA (116)
MetaboLights (102)
PeptideAtlas (82)
MassIVE (37)
ENA (22)
dbGaP (7)
GNPS (5)
GPMDB (4)
jPOST (3)
geo (2)
PanoramaPublic (2)

Tissue

Cell culture (159)
Liver (44)
Brain (44)
Liver (37)
Epithelial cell (36)
Plant cell (23)
Blood plasma (22)
Lung (22)
Permanent cell line cell (22)
Heart (19)
Leaf (19)
Testis (15)
Kidney (15)
Embryo (14)
Whole body (14)
Hepatocyte (14)
Plasma Non-glyco (13)
Spleen (13)
B cell (11)
Colon (11)
Macrophage (10)
Blood (10)
Cell suspension culture (9)
Stem cell (9)
Lymph node (8)
Blood serum (8)
Root (8)
HeLa cell (7)
Others (6)
Male Reproductive System (2)

Disease

Disease free (23)
Colon cancer (17)
Breast cancer (11)
Cardiovascular system disease (9)
Diabetes mellitus (6)
Acute leukemia (6)
Alzheimer's disease (5)
Type 2 diabetes mellitus (4)
Not Available (4)
Prostate adenocarcinoma (4)
Cervix carcinoma (4)
Liver cancer (4)
Neurodegenerative disease (3)
Parkinson's disease (3)
Hepatocellular carcinoma (3)
Severe acute respiratory syndrome (3)
Pancreatic ductal adenocarcinoma (3)
Bacterial infectious disease (2)
Heart disease (2)
Human immunodeficiency virus infectious disease (2)
Fatty liver disease (1)
Mature T-cell and NK-cell lymphoma (1)
Glucocorticoid-remediable aldosteronism (1)
Polycythemia due to hypoxia (1)
Neonatal abstinence syndrome (1)
Amyloidosis (1)
Mammary adenocarcinoma (pleural effusion) (1)
Untreated prostate cancer (1)
Prostate carcinoma (1)
Normal (1)

Technology Type

Mass Spectrometry (676)
Shotgun proteomics (342)
Bottom-up proteomics (110)
Mass spectrometry (95)
Affinity purification coupled with mass spectrometry proteomics (70)
Gel-based experiment (52)
Data-dependent acquisition (48)
Data-independent acquisition (44)
Chemical cross-linking coupled with mass spectrometry proteomics (23)
SWATH MS (22)
Top-down proteomics (22)
Illumina 15K (8)
All-ion fragmentation (8)
SRM/MRM (8)
Olink affinity proteomics (6)
Affinity proteomics (6)
Mass spectrometry assay (5)
Illumina HiSeq 2000 (4)
Mass spectrometry imaging (4)
DiaPASEF (4)
Illumina HiSeq 2000, ILLUMINA (2)
NMR spectroscopy (2)
Illumina HiSeq 4000, ILLUMINA (1)
AB 5500 Genetic Analyzer (1)
Illumina (1)
Illumina HiSeq 2500 (1)
Illumina_660K/Illumina_670K (1)
Life Tech - Solid (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)

Instrument Platform

Illumina NovaSeq 6000 (36)
Illumina HiSeq 4000 (19)
Illumina HiSeq 2500 (11)
Illumina HiSeq 2000 (8)
Q Exactive HF (6)
LTQ Orbitrap Velos (5)
Q Exactive (5)
Instrument (4)
MS:1000031 (4)
Orbitrap Eclipse (4)
LTQ Orbitrap Elite (4)
NextSeq 500 (3)
Q Exactive Plus (3)
LTQ Orbitrap (3)
Illumina Genome Analyzer (2)
Illumina Genome Analyzer II (2)
NextSeq 550 (2)
Bruker maXis ESI Quadrupole TOF (2)
TripleTOF 6600 (2)
Orbitrap Exploris 480 (2)
Hamamatsu Nanozoomer S60 (1)
10X Chromium Controller (1)
HiSeq 2000 (1)
Computater Servers UPPMAX-SNIC. (1)
Illumina Tru-seq RNA (1)
NanoDrop spectrophotometer (NanoDrop Technologies, Wilmington, DE) (1)
Dynamic light scattering and zeta potential. The experiments were performed on a Malvern Zetasizer NanoZS instrument using a He-Ne laser (Max, 5 mW) at 633 nm. (1)
GenePix 4000B [Axon Instruments] (1)
None (1)
6210 Time-of-Flight LC/MS (1)

Publication Date

2005 (233)
2024 (202)
2022 (146)
2025 (143)
2023 (130)
2021 (128)
2026 (104)
2020 (87)
2014 (68)
2013 (68)
2019 (67)
2015 (66)
2010 (62)
2016 (61)
2012 (56)
2018 (47)
2011 (47)
2017 (38)
2008 (24)
2009 (13)
2007 (8)
2006 (8)
2004 (4)
2002 (1)
2001 (1)

UNIPROT ID/AC

P20438 (5)
P53197 (5)
P26309 (5)
P30283 (5)
P24869 (5)
P38634 (5)
P01308 (4)
P00549 (4)
P04806 (4)
P00560 (4)
P16862 (4)
P16861 (4)
P00924 (4)
P00950 (4)
P00360 (4)
P06169 (4)
P12709 (4)
P14540 (4)
Q9LKL2 (4)
P11746 (4)
P20437 (4)
P22434 (3)
P06776 (3)
Q06147 (3)
Q12246 (3)
P50107 (3)
P32327 (3)
P11154 (3)
P11325 (3)
P40363 (3)

ENSEMBL ID

ENSG00000170477 (18)
ENSG00000247315 (9)
ENSG00000147251 (5)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000139318 (1)
ENSG00000168646 (1)
ENSG00000204131 (1)

CHEBI ID

CHEBI:16027 (26)
CHEBI:15422 (18)
CHEBI:17234 (18)
CHEBI:17754 (18)
CHEBI:16761 (17)
CHEBI:33699 (14)
CHEBI:18367 (12)
CHEBI:16908 (12)
CHEBI:15846 (12)
CHEBI:16108 (12)
CHEBI:29108 (10)
CHEBI:15996 (10)
CHEBI:17552 (10)
CHEBI:15361 (10)
CHEBI:17794 (10)
CHEBI:29052 (9)
CHEBI:15343 (9)
CHEBI:16001 (9)
CHEBI:16526 (9)
CHEBI:17835 (8)
CHEBI:28013 (7)
CHEBI:16236 (7)
CHEBI:16905 (7)
CHEBI:18021 (7)
CHEBI:15351 (6)
CHEBI:28602 (6)
CHEBI:16474 (6)
CHEBI:16595 (5)
CHEBI:16551 (5)
CHEBI:28087 (5)

Metabolite Name

Uridine (20)
Hypoxanthine (20)
Adenine (19)
Citric acid (18)
Uric acid (17)
Inosine (17)
Uracil (15)
Adenosine (15)
L-Tyrosine (15)
L-Arginine (14)
Xanthine (14)
Leucine (13)
Taurine (13)
Stearic acid (13)
Azelaic acid (13)
Pantothenic acid (12)
Choline (12)
Guanine (12)
Palmitic acid (12)
Linoleic acid (12)
L-Tryptophan (12)
Guanosine (12)
Creatinine (12)
Nicotinic acid (11)
Kynurenic acid (11)
Ornithine (11)
Malic acid (11)
Proline (11)
Sucrose (11)
L-Phenylalanine (11)

First Public Date

2014 (5)
2023 (3)
2024 (2)
2022 (2)
2019 (2)
2017 (2)
2016 (2)
2013 (2)
2025 (1)
2020 (1)

Modelling Approach

Ordinary differential equation model (307)
Delayed differential equation model (1)
Constraint-based model (1)

Lab affiliation

State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences • Beijing, Beijing Institute of Lifeomics, Beijing, China (7)
He JunJun (5)
Chinese Academy of Sciences Shanghai Institute of Materia Medica (5)
Fraunhofer Institute for Molecular Biology and Applied Ecology IME Auf dem Aberg 1 | 57392 Schmallenberg | Germany (4)
Medical Research Council Mitochondrial Biology Unit, University of Cambridge. U.K. (4)
Professor and Director Center of Proteomic Analysis BGI-Shenzhen (4)
Research Unit for Molecular Medicine, Department of Clinical Medicine, Aarhus University, Denmark (3)
Ruhr-Universität Bochum Medizinisches Proteom-Center (3)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
Biological Science Research Center, Southwest University, Chongqing, 400715, China (3)
Division of Medical Inflammation Research, Dept. Medical Biochemistry and Biophysics, Karolinska Institute, Sweden (3)
JiNan (3)
Beijing proteome research center (3)
Department of Plant Systems Biology, University of Hohenheim, 70599 Stuttgart, Germany (3)
State Key Laboratory of Proteomics, National Center for Protein Sciences Beijing, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 102206, China (3)
Institute of Immunology and Department of Orthopaedics of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310058, China (3)
Sun Yat-sen University (3)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University, Guangzhou 510632, China (3)
Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (3)
Zhejiang University (3)
The Institute of Cancer Research (3)
Fraunhofer Attract Eco’n’OMICs, Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Auf dem Aberg 1, 57392 Schmallenberg. (2)
Institute of Crop Germplasm Resources, Shandong Academy of Agricultural Sciences, Ji’nan, 250100, Shandong, China (2)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing 211166, Jiangsu, China (2)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and 9 Technology, Jinan University, Guangzhou 510632, China (2)
Key Laboratory of Modern Toxicology of Shenzhen, Shenzhen Center for Disease Control and Prevention, No. 8, Longyuan Road, Nanshan District, Shenzhen, China 518055. (2)
Department of Clinical Pharmacy, University of Michigan (2)
Clinical Proteomics (2)
Molecular Proteomics Laboratory (2)
Clinical Protein Science & Imaging, Dept. of Measurement Technology and Industrial Electrical Engineering, Lund University, Lund, Sweden (2)

IsPrivate

False (333)

Model Flag

Non Kinetic (31)
Non Miriam (9)

Submitter Keywords

TransQST (1)
FROG (1)
Immuno-oncology (1)

Modification

Not available (6)
15.994915 (2)
57.021464 (2)
-17.026549 (1)
42.010565 (1)
6x(2)H labeled dimethylated L-arginine (1)
N6 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
N6-dimethyl-L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (222)
RNA-seq of coding RNA (83)
ChIP-seq (32)
RNA-seq of coding RNA from single cells (32)
Methylation profiling by high throughput sequencing (20)
RNA-seq of non coding RNA (14)
Comparative genomic hybridization by array (9)
Unknown experiment type (8)
Methylation profiling by array (7)
Transcription profiling by tiling array (5)
Cell line - High-throughput sequencing (4)
Animal - High-throughput sequencing (3)
Genotyping by array (3)
MicroRNA profiling by array (3)
DNA-seq (3)
Cell line - Single-cell sequencing (2)
Hi-C (2)
Other (2)
ScATAC-seq (2)
ChIP-chip by tiling array (1)
Human - Single-cell sequencing (1)
Cell line - One-color microarray (1)
RNAi profiling by array (1)
Capture-C (1)
Transcription profiling by RT-PCR (1)
ATAC-seq (1)
Genotyping by high throughput sequencing (1)

Release Date

2025 (7162)
2022 (6171)
2023 (5772)
2024 (5677)
2021 (4895)
2020 (3567)
2019 (2523)
2018 (2085)
2017 (1723)
2016 (1562)
2015 (1197)
2026 (987)
2014 (950)
2013 (611)
2012 (497)
2011 (381)
2010 (321)
2009 (220)
2008 (135)
2007 (72)
2006 (49)
2005 (31)
2004 (21)
2003 (17)
2002 (16)
2000 (12)
2001 (7)
1999 (7)
1998 (4)
1992 (1)

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Collagen induced arthritis in dba/1j mice associates with oxylipin changes in plasma

Oxylipins play important roles in various biological processes and are considered as mediators of inflammation for a wide range of diseases such as rheumatoid arthritis (RA). The purpose of this research was to study differences in oxylipin levels between a widely used collagen-induced arthritis (CI...

2015-11-04 | MTBLS243 | MetaboLights

Pyruvate fermentation vs Lactate-Sulfate

In order to obtain a global view of energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough and the proteins involved therein whole-genome microarrays were used to compare the transcriptional response of cells grown with hydrogen/sulfate, pyruvate/sulfate, lactate/thio...