He Yang Y - OmicsDI

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Unknown (12002)
Proteomics (325)
Transcriptomics (63)
Genomics (28)
Metabolomics (27)
Multiomics (6)
Other (2)
Models (1)

Organisms

Homo sapiens (223)
Mus musculus (85)
Rattus norvegicus (21)
Zea mays (5)
Oryza sativa (4)
Escherichia coli (4)
Arabidopsis thaliana (3)
Severe acute respiratory syndrome coronavirus 2 (3)
Oryctolagus cuniculus (2)
Ovis aries (2)
Mycobacterium tuberculosis (2)
Pseudomonas aeruginosa (2)
Rattus rattus (2)
Rhodococcus opacus (1)
Helianthus annuus (1)
uncultured bacterium (1)
Bombyx mori (1)
Oryza sativa Indica Group (1)
Caenorhabditis elegans (1)
Canis lupus familiaris (1)
Danio rerio (1)
Capsella rubella (1)
Cucurbita ficifolia (1)
Epinephelus fuscoguttatus x Epinephelus lanceolatus (1)
Macaca fascicularis fascicularis (1)
Medicago truncatula (1)
Mus (1)
Nicotiana tabacum (1)
Pseudomonas protegens Pf-5 (1)
Staphylococcus aureus subsp. aureus RN4220 (1)

Repository

pride (179)
iProX (101)
biostudies-arrayexpress (77)
PeptideAtlas (29)
MetaboLights (27)
MassIVE (15)
EGA (14)
GPMDB (2)
BioModels (1)
PanoramaPublic (1)
ENA (1)

Tissue

Cell culture (46)
Plasma Non-glyco (22)
Liver (15)
Brain (14)
Permanent cell line cell (11)
Lung (7)
Macrophage (7)
Kidney (5)
Blood plasma (4)
Blood serum (4)
Epithelial cell (4)
Heart (4)
Plant cell (4)
Whole body (4)
Others (3)
HeLa cell (3)
Leaf (3)
Malignant cell (3)
Placenta (3)
Spleen (3)
Male Reproductive System (2)
Adrenal adenoma cell (2)
Bone marrow (2)
Cell suspension culture (2)
Chondrocyte (2)
Colon (2)
Early embryonic cell (2)
Hepatocyte (2)
Ovary (2)
Primary cell (2)

Disease

Disease free (6)
Colon cancer (5)
Alzheimer's disease (3)
Not Available (2)
Breast cancer (2)
Cardiovascular system disease (2)
Hepatocellular carcinoma (2)
Acute leukemia (1)
Bacterial sepsis (1)
Bladder neck obstruction (1)
Brain glioblastoma multiforme (1)
Cerebrovascular disease (1)
Gastric adenocarcinoma (1)
Idiopathic pulmonary fibrosis (1)
Liver cancer (1)
Liver inflammation (1)
Lung cancer (1)
Multiple myeloma (1)
Pancreatic cancer (1)
Pancreatic carcinoma (1)
Pancreatic ductal adenocarcinoma (1)
Primary ovarian insufficiency (1)
Severe acute respiratory syndrome (1)
Stomach disease (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (179)
Shotgun proteomics (80)
Bottom-up proteomics (33)
Mass spectrometry (24)
Data-independent acquisition (19)
Data-dependent acquisition (16)
Affinity purification coupled with mass spectrometry proteomics (15)
Gel-based experiment (12)
Chemical cross-linking coupled with mass spectrometry proteomics (11)
SWATH MS (7)
Top-down proteomics (6)
Illumina HiSeq 2000, ILLUMINA (2)
Mass spectrometry assay (2)
RNA mass spectrometry (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
DiaPASEF (1)
Mass spectrometry imaging (1)

Instrument Platform

LTQ Orbitrap Velos (14)
Liquid Chromatography MS - negative - reverse phase (14)
Liquid Chromatography MS - positive - reverse phase (13)
TripleTOF 5600 (12)
MS:1000031 (3)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
Illumina NovaSeq 6000 (2)
Instrument (2)
Q Exactive HF (2)
Q Exactive HF-X (2)
Q Exactive (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Ascend (1)
Orbitrap Astral (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Agilent 7890A+LECO Chroma TOF PEGASUS HT (1)
Bruker (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2025 (55)
2024 (54)
2023 (42)
2026 (38)
2022 (35)
2021 (35)
2013 (34)
2015 (32)
2019 (15)
2016 (12)
2014 (12)
2017 (12)
2018 (12)
2020 (11)
2012 (9)
2010 (9)
2009 (7)
2006 (3)
2005 (1)
2011 (1)

UNIPROT ID/AC

A0A024RC46 (27)
B3KML9 (27)
B4DRV9 (27)
B4E3A4 (27)
G8JLB6 (27)
I3L4N8 (27)
O95678 (27)
P02533 (27)
P02538 (27)
P02545 (27)
P02545-2 (27)
P02545-3 (27)
P04259 (27)
P04350 (27)
P04406 (27)
P05141 (27)
P05783 (27)
P05787 (27)
P06748 (27)
P06748-2 (27)
P06748-3 (27)
P07437 (27)
P07900 (27)
P08238 (27)
P08670 (27)
P08727 (27)
P08729 (27)
P08865 (27)
P09651 (27)
P09651-2 (27)

ENSEMBL ID

ENSG00000170477 (25)
ENSG00000147251 (9)
ENSG00000247315 (9)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:15354 (12)
CHEBI:17368 (11)
CHEBI:17596 (9)
CHEBI:17750 (9)
CHEBI:30769 (9)
CHEBI:15971 (8)
CHEBI:16704 (8)
CHEBI:16708 (8)
CHEBI:16737 (8)
CHEBI:17295 (8)
CHEBI:17895 (8)
CHEBI:55328 (8)
CHEBI:15428 (7)
CHEBI:15756 (7)
CHEBI:15891 (7)
CHEBI:16027 (7)
CHEBI:16040 (7)
CHEBI:16335 (7)
CHEBI:16393 (7)
CHEBI:16750 (7)
CHEBI:17351 (7)
CHEBI:17568 (7)
CHEBI:17775 (7)
CHEBI:17821 (7)
CHEBI:18132 (7)
CHEBI:27897 (7)
CHEBI:28834 (7)
CHEBI:64566 (7)
CHEBI:7916 (7)
CHEBI:16020 (6)

Metabolite Name

Cholic acid (6)
Citric acid (6)
Deoxycholic acid (6)
Hypoxanthine (6)
Uric acid (6)
Uridine (6)
Adenine (5)
Choline (5)
Taurine (5)
Arachidonic acid (4)
Deoxyinosine (4)
Genistein (4)
Guanosine (4)
Inosine (4)
Kynurenic acid (4)
L-Tyrosine (4)
Leucine (4)
Linoleic acid (4)
Maltotriose (4)
Palmitic acid (4)
Pyroglutamic acid (4)
Thymidine (4)
Uracil (4)
Xanthine (4)
16-Hydroxy hexadecanoic acid (3)
5-Hydroxyindoleacetate (3)
8-iso-15-keto-PGE2 (3)
Adenosine (3)
Adipic acid (3)
Azelaic acid (3)

First Public Date

2017 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Institutes of Biomedical Sciences and department of Chemistry, Fudan University, Shanghai, China (6)
Professor and Director Center of Proteomic Analysis BGI-Shenzhen (4)
Beijing proteome research center (3)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
Institute For Systems Biology (3)
State Key Laboratory of Proteomics, National Center for Protein Sciences Beijing, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 102206, China (3)
Department of Clinical Laboratory, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China. The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (2)
Department of Laboratory Medicine, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China. (2)
Huazhong University of Science and Technology Union Shenzhen Hospital (2)
Institute for Systems Biology (2)
Institute of Immunology and Department of Orthopaedics of the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310058, China (2)
Institute of Reproductive Medicine, Medical School, Nantong University, Nantong 226001, China (2)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and 9 Technology, Jinan University, Guangzhou 510632, China (2)
New Cornerstone Science Laboratory, State Key Laboratory of Crop Gene Exploration and Utilization in Southwest China, Sichuan Agricultural University, Chengdu, China (2)
Shanghai Center for Systems Biomedicine, Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Jiao Tong University, Shanghai 200240, China (2)
Sichuan Provincial People's Hospital (2)
St Jude Children's Research Hospital (2)
State Key Lab of Reproductive Medicine, Nanjing Medical University (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China (2)
State Key Laboratory of Medical Molecular Biology, Department of Biochemistry and Molecular Biology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, School of Basic Medicine Peking Union Medical College, Beijing 100005, China. (2)
Sun Yat-sen University (2)
The Fifth Affiliated Hospital of Guangzhou Medical University (2)
The First Affiliated Hospital, School of Medicine, Zhejiang University (2)
Tongji University (2)
the First Affiliated Hospital of Chongqing Medical University (2)
, Dana-Farber Cancer Institute, Harvard Medical School 360 Longwood Avenue Longwood Center, LC4117 Boston, MA 02215 (1)
1 Department of Hepatobiliary & Pancreatic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, 430071, PR China. 2 Clinical Medicine Research Center for Minimally Invasive Procedure of Hepatobiliary & Pancreatic Diseases of Hubei Province, Hubei, PR China. 3 Taikang Center for Life and Medical Sciences of Wuhan University (1)
1. Precision Medicine Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. 2. Cardiovascular Disease Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. 3. Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. (1)
1.Department of Pharmaceutics, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China 2.State Key Laboratory of Natural and Biomimetic Drugs, Beijing 100191, China 3.Beijing Key Laboratory of Molecular Pharmaceutics and New Drug Delivery Systems, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China (1)
1.Department of Pharmaceutics, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China 2.State Key Laboratory of Natural and Biomimetic Drugs, Beijing 100191, China Beijing Key Laboratory of Molecular Pharmaceutics and New Drug Delivery Systems, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China (1)

IsPrivate

False (1)

Modification

6x(2)H labeled dimethylated L-arginine (1)

Study type

Transcription profiling by array (35)
RNA-seq of coding RNA (18)
ChIP-seq (8)
Methylation profiling by high throughput sequencing (5)
Other (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (2105)
2022 (1639)
2023 (1596)
2024 (1578)
2021 (1280)
2020 (853)
2019 (624)
2018 (527)
2017 (412)
2016 (318)
2026 (303)
2015 (257)
2014 (179)
2013 (153)
2012 (89)
2011 (64)
2010 (42)
2009 (27)
2008 (12)
2006 (5)
2005 (5)
2007 (4)
2003 (2)
2002 (2)
2004 (1)
2001 (1)
2000 (1)

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Efficacy of Jia Wei Yang He formula as an adjunctive therapy for asthma: study protocol for a randomized, double blinded, controlled trial.

Not available

S-EPMC6032802 | biostudies-literature

Protocol for a parallel assignment prospective, randomised, comparative trial to evaluate the safety and efficacy of intense pulsed light (IPL) combined with 3% diquafosol (DQS) ophthalmic solution in dry eye syndrome.

Not available

S-EPMC10465902 | biostudies-literature

A Bifunctional SPD-0090 contributes virulence of Streptococcus pneumoniae by affecting iron transport and galactose metabolism

Streptococcus pneumoniae (S.pneumoniae) is a Gram-positive bacterial pathogen that colonizes on the mucosal surfaces of the host's nasopharynx and upper respiratory tract and results in pneumonia. In order to survive and infect the host, S.pneumoniae must have obtain essential nutrients, such as tra...

ORGANISM(S): Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)

2022-06-01 | PXD030183 | Pride

Datasets of YY1 expression in rheumatoid arthritis patients.

Not available

S-EPMC5123053 | biostudies-literature

Maternal nutrition modulates fetal development through inducing placental efficiency changes in gilts

Intra-uterine growth restriction (IUGR) and fetal overgrowth increase the risk of postnatal health. Maternal nutrition is the major intrauterine environmental factor that alters fetal weight. However, the mechanisms underlying maternal nutrition affect fetal development is not entirely clear. We dev...

ORGANISM(S): Sus scrofa domesticus (domestic pig)

2018-10-26 | PXD004951 | Pride

Fetal weight Energy level Itraq Gilts Placenta

Relationship between ocular surface pain and corneal nerve loss in dry eye diabetics: a cross-sectional study in Shenyang, China.

Not available

S-EPMC10533686 | biostudies-literature

Nanostructured fuzz growth on tungsten under low-energy and high-flux He irradiation.

Not available

S-EPMC4468520 | biostudies-literature

The transcription factor Yin Yang 1 is essential for oligodendrocyte progenitor differentiation.

Not available

S-EPMC2034312 | biostudies-literature