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TranscriptomicsGenome-wide QTL analysis in combination with a genetical-genomics approach reveals new candidate genes for the control of tuber carotenoid content in potato
The aim of this study was to conduct a genome-wide analysis for constituent tuber carotenoid QTL. Using a genetical genomics approach samples from clones with similar carotenoid traits were bulked and patterns of gene expression were measured for each bulk by microarray analysis. Variation of gene e...
ORGANISM(S): Solanum tuberosum 
2011-12-26 | E-TABM-1200 | biostudies-arrayexpress
TranscriptomicsJHI Pa MC mutants
Plant cell wall degrading enzymes (PCWDEs) are key virulence determinants in the pathogenesis of the potato pathogen, Pectobacterium atrosepticum. In this study, we report the impact on virulence of a transposon insertion mutation in the metJ gene that codes for the repressor of the methionine biosy...
ORGANISM(S): Pectobacterium atrosepticum 
2012-11-02 | E-MTAB-1167 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of potato germplasm differentiated in quality traits to identify candidate flavour and texture genes - 2006 results
Expression profiling of potato germplasm differentiated in quality traits using Agilent custom potato (POCI) arrays
ORGANISM(S): Solanum tuberosum 
2008-10-14 | E-TABM-452 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of potato germplasm from different cultivars and developmental stages
Expression profiling of potato germplasm differentiated in quality traits using Agilent custom potato (POCI) arrays
ORGANISM(S): Solanum tuberosum 
2008-10-14 | E-TABM-451 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of the potato (Solanum tuberosum L.) plant response to moderately elevated temperature
Although significant work has been undertaken regarding the response of model and crop plants to heat shock during the acclimatory phase, few studies have examined the steady state response to the mild heat stress encountered in temperate agriculture. In the present work we therefore exposed tuberis...
ORGANISM(S): Solanum tuberosum 
2013-08-01 | E-MTAB-1655 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of pigmented and non-pigmented tubers of Solanum tuberosum
Transcriptional analysis of pigmented and non-pigmented potato tuber flesh using POCI 44k microarrays
ORGANISM(S): Solanum tuberosum 
2010-01-01 | E-TABM-787 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of pigmented and non-pigmented tubers of Solanum tuberosum
Transcriptional analysis of pigmented and non-pigmented potato tuber flesh using POCI 44k microarrays
ORGANISM(S): Solanum tuberosum 
2010-01-01 | E-TABM-788 | biostudies-arrayexpress
TranscriptomicsDsbA plays a critical and multi-faceted role in the production of secreted virulence factors by Erwinia carotovora
Erwinia carotovora subsp. atroseptica (Eca) is an enterobacterial phytopathogen causing economically-significant soft rot disease. Pathogenesis is mediated by multiple secreted virulence factors, many of which are secreted by the Type II (Out) secretion system. DsbA catalyses the introduction of dis...
ORGANISM(S): Pectobacterium carotovorum 
2010-06-20 | E-GEOD-10647 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of barley seedling leaves from serveral different strains challenged with Puccinia hordei (parental lines)
Transcript-Level Variation in Barley Seedling Leaves Challenged with Puccinia hordei and the Molecular Basis of Partial Resistance to Leaf Rust
ORGANISM(S): Hordeum vulgare 
2009-12-01 | E-TABM-747 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of barley seedling leaves from serveral different strains challenged with Puccinia hordei
Transcript-Level Variation in Barley Seedling Leaves Challenged with Puccinia hordei and the Molecular Basis of Partial Resistance to Leaf Rust
ORGANISM(S): Hordeum vulgare 
2009-10-01 | E-TABM-645 | biostudies-arrayexpress
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