Hek293t - OmicsDI

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Unknown (2214)
Genomics (1752)
Proteomics (1180)
Transcriptomics (756)
Other (107)
Methylation profiling (23)
Metabolomics (14)
Multiomics (2)

Organisms

Homo sapiens (1133)
Homo sapiens (845)
Mus musculus (845)
Schizosaccharomyces pombe (844)
Mus musculus (130)
synthetic construct (7)
Rattus norvegicus (5)
Gallus gallus (3)
Saccharomyces cerevisiae (3)
Escherichia coli (3)
BTO:0002181 (3)
cellular organisms (3)
Macaca mulatta (2)
Arabidopsis thaliana (2)
Bos taurus (2)
Aedes aegypti (1)
Vesicular stomatitis Indiana virus (1)
Human betaherpesvirus 6 (1)
Human betaherpesvirus 6A (1)
Peromyscus leucopus (1)
unidentified plasmid (1)
Chlorocebus aethiops (1)
Chlorocebus sabaeus (1)
Caenorhabditis elegans (1)
Sus scrofa (1)
Rhipicephalus haemaphysaloides (1)
Macaca fascicularis (1)
Zea mays (1)
Drosophila melanogaster (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Organisms

Homo sapiens (1111)
Mus musculus (32)
synthetic construct (3)
Gallus gallus (2)
Homo sapiens neanderthalensis (1)
Adeno-associated virus (1)
Aquarana catesbeiana (1)
Chlorocebus sabaeus (1)
Caenorhabditis elegans (1)
Ovis aries (1)
Sus scrofa (1)
Rattus norvegicus (1)
Saccharomyces cerevisiae (1)

Repository

ENA (1572)
pride (845)
geo (562)
biostudies-arrayexpress (501)
MassIVE (134)
iProX (117)
jPOST (69)
MetaboLights (13)
PanoramaPublic (6)
PeptideAtlas (5)
ExpressionAtlas (4)
NODE (2)
EGA (1)
GPMDB (1)

Tissue

Cell culture (395)
Epithelial cell (126)
Permanent cell line cell (101)
Kidney (73)
Early embryonic cell (56)
HEK-293T cell (46)
Embryonic stem cell (19)
Fibroblast (18)
Brain (16)
Kidney cell (14)
Heart (11)
Lung (8)
Cell suspension culture (7)
HeLa cell (7)
T cell (7)
Others (5)
HEK-293 cell (5)
Macrophage (5)
Kidney epithelial cell (5)
Embryo (5)
Hepatocyte (5)
Liver (5)
Embryonic kidney cell line (4)
Colon (4)
Ovary (3)
Stem cell (3)
Blood (3)
Cell line (2)
Prostate gland (2)
Melanocyte (2)

Disease

Disease free (51)
Breast cancer (8)
Acute leukemia (7)
Colon cancer (5)
Melanoma (4)
Polycystic Kidney (3)
Lung adenocarcinoma (3)
Brain cancer (3)
Urinary bladder cancer (3)
Amyotrophic lateral sclerosis (3)
COVID-19 (3)
Large B-cell lymphoma (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Coronavirus infectious disease (2)
Inflammation (2)
Mitochondrial metabolism disease (2)
Multiple myeloma (2)
Cervix carcinoma (2)
Influenza (2)
Prostate cancer (1)
Not Available (1)
Tonne-Kalscheuer syndrome (1)
Polyneuropathy (1)
Congenital contractural arachnodactyly (1)
Charcot-Marie-Tooth disease axonal type 2C (1)
3-methylglutaconic aciduria type 9 (1)
Marfan syndrome (1)
Myelodysplastic syndrome (1)
Musculoskeletal system disease (1)
Kaposi's sarcoma (1)

Technology Type

Mass Spectrometry (845)
Affinity purification coupled with mass spectrometry proteomics (307)
Shotgun proteomics (295)
Bottom-up proteomics (167)
Data-dependent acquisition (109)
Gel-based experiment (97)
Data-independent acquisition (39)
Chemical cross-linking coupled with mass spectrometry proteomics (23)
Top-down proteomics (18)
SWATH MS (15)
Mass spectrometry (10)
Affinity proteomics (9)
SRM/MRM (8)
Mass spectrometry imaging (4)
DiaPASEF (4)
Mass spectrometry assay (3)
Proteogenomics (3)
Glycoproteomics (3)
All-ion fragmentation (3)
MSE (2)
SomaScan affinity proteomics (1)
Immunopeptidomics (1)

Instrument Platform

Illumina NovaSeq 6000 (32)
Illumina HiSeq 2500 (15)
NextSeq 500 (13)
Illumina HiSeq 2000 (11)
Illumina HiSeq 4000 (11)
Illumina MiSeq (9)
NextSeq 550 (9)
Illumina HiSeq 1500 (4)
PromethION (2)
Illumina NovaSeq X (2)
KAPA EvoPrep Kit (1)
Bio-Rad Mini-PROTEAN electrophoresis system and wet transfer cassettes, (1)
Bio-Link Crosslinker BLX-E254 (1)
BD FACSAria Fusion (1)
DNBSEQ Devices (1)
TriFast (VWR, 30-2010), RNeasy Mini Kit (Qiagen, 74104), DNAse 1 (NEB, M0303); Agilent 2100 Bioanalyzer (1)
HEK-293T cells, Media, PEI, Illumination device (1)
Element AVITI (1)
Unknown (1)
E.Z.N.A. Total RNA Kit I (Omega Bio-tek) (1)
MoFlo Legacy cell sorter (Beckman Coulter) (1)
PC (1)
BD FACSARIA III (1)
Fluidigm C1 (1)
Affymetrix Primeview Human Gene Expression Array (1)
Illumina HiScanSQ (1)
Affymetrix GeneChip Scanner 3000 (1)
G2565BA DNA microarray scanner [Agilent] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)

Publication Date

2025 (288)
2024 (229)
2026 (221)
2023 (218)
2022 (213)
2021 (152)
2020 (125)
2015 (116)
2019 (98)
2014 (93)
2018 (85)
2017 (76)
2013 (58)
2012 (57)
2016 (55)
2010 (37)
2011 (32)
2008 (21)
2009 (12)
2007 (3)
2005 (3)
2006 (1)

UNIPROT ID/AC

Q9Y462 (5)
Q9H2Z4 (5)
Q96T17-2 (5)
Q96S90 (5)
Q8WU79 (5)
Q86SE9 (5)
Q16626 (5)
O15063 (5)
A7E2V4 (5)
Q9Y6K1 (5)
Q9Y2I1 (5)
Q9P2K3 (5)
Q9NUK0 (5)
Q9H6K5 (5)
Q9BZD4 (5)
Q9BRR8 (5)
Q96GN5 (5)
P52799 (5)
Q9Y4C2 (5)
Q9Y496 (5)
Q9Y375 (5)
Q9Y2W6 (5)
Q9Y2T4 (5)
Q9ULC3 (5)
Q9NW82 (5)
Q9NPD8 (5)
Q9P2K5 (5)
Q9NWW5 (5)
Q9NPL8 (5)
Q9HC52 (5)

ENSEMBL ID

ENSG00000247315 (3)
ENSG00000147251 (3)
ENSG00000170477 (3)

CHEBI ID

CHEBI:28044 (6)
CHEBI:26271 (5)
CHEBI:18237 (5)
CHEBI:17126 (5)
CHEBI:22660 (5)
CHEBI:16811 (5)
CHEBI:28300 (5)
CHEBI:25017 (5)
CHEBI:16335 (5)
CHEBI:15891 (5)
CHEBI:16449 (5)
CHEBI:29016 (5)
CHEBI:16704 (5)
CHEBI:18186 (4)
CHEBI:16668 (4)
CHEBI:17562 (4)
CHEBI:16750 (4)
CHEBI:16737 (4)
CHEBI:27897 (4)
CHEBI:15354 (4)
CHEBI:17368 (4)
CHEBI:17822 (3)
CHEBI:15611 (3)
CHEBI:17287 (3)
CHEBI:18132 (3)
CHEBI:49033 (3)
CHEBI:25094 (3)
CHEBI:36314 (3)
CHEBI:16040 (3)
CHEBI:17239 (3)

Metabolite Name

Guanosine (4)
Cytidine (4)
Uridine (3)
Pseudouridine (3)
N-acetylglutamate (3)
Inosine (3)
Adenosine (3)
Uracil (3)
Cytosine (3)
Phenylalanine (3)
2'-O-methyluridine (2)
7-methylguanosine (2)
S-methylcysteine (2)
N-acetylphenylalanine (2)
N-acetylglycine (2)
3-methylcytidine (2)
5-methylcytidine (2)
Hypotaurine (2)
Leucine (2)
2'-O-methylcytidine (2)
Xanthosine (2)
Urate (2)
Tryptophan (2)
Thymine (2)
Thymidine (2)
Taurine (2)
Serine (2)
Sarcosine (2)
Saccharopine (2)
Proline (2)

First Public Date

2025 (251)
2024 (238)
2026 (201)
2022 (180)
2023 (160)
2019 (104)
2021 (103)
2020 (94)
2014 (61)
2018 (57)
2017 (54)
2015 (37)
2016 (16)
2013 (16)

Classification

viruses (1)

Modification

2x(15)N labeled L-lysine (6)
4x(15)N labeled L-arginine (6)
15.994915 (5)
57.021464 (4)
71.037114 (3)
6.020129 (1)
79.966331 (1)
4x(2)H labeled dimethylated residue (1)
-17.026549 (1)
42.010565 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (200)
RNA-seq of coding RNA (110)
ChIP-seq (56)
Other (28)
RNA-seq of non coding RNA (16)
Cell line - High-throughput sequencing (15)
RNA-seq of total RNA (8)
ChIP-chip by tiling array (7)
Methylation profiling by high throughput sequencing (7)
CLIP-seq (6)
CUT&RUN (6)
RNA-seq of coding RNA from single cells (5)
ATAC-seq (4)
Methylation profiling by array (4)
Proteomic profiling by array (4)
RNAi profiling by array (3)
RIP-seq (3)
DNA-seq (3)
Unknown experiment type (2)
ChIP-chip by array (2)
Ribo-seq (2)
Genotyping by high throughput sequencing (2)
Transcription profiling by high throughput sequencing (1)
Transcription profiling by SAGE (1)
Baseline (1)
RIP-chip by array (1)
Animal - High-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
Comparative genomic hybridization by array (1)
MicroRNA profiling by array (1)

Release Date

2022 (308)
2021 (259)
2023 (253)
2025 (239)
2024 (208)
2020 (201)
2015 (175)
2019 (149)
2014 (134)
2018 (130)
2016 (125)
2017 (120)
2013 (99)
2012 (76)
2011 (63)
2010 (58)
2026 (37)
2008 (35)
2009 (25)
2007 (9)
2006 (4)
2005 (4)
2003 (1)
2002 (1)
2000 (1)

Lab affiliation

Professor of Molecular Physiology, Leiden Institute of Chemistry, Leiden University, The Netherlands (10)
Associate Member Developmental Neurobiology St. Jude Children's Research Hospital (9)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (7)
Department of Cell Biology, Harvard Medical School, Boston MA 02115 USA (6)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (5)
UCSF (5)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (5)
Department of Cell Biology, Harvard Medical School, Boston, MA 02115 USA (4)
Berlin Institute of Health at Charite, Universitaetsmedizin Berlin, Core Facility Proteomics; Max Delbrueck Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany (4)
Sun Yat-sen University (4)
Peking University (4)
Medical bioanalytics Institute for ophthalmic research Eberhard-Karls-University Tuebingen (3)
Crick-GSK LinkLabs, UK (3)
DIMEVET Università degli Studi di Milano (3)
Medical University of Vienna, Austria (3)
Institute of Biochemistry 2, Goethe University Frankfurt, Germany (3)
Immunology Research Center, National Health Research Institutes, Zhunan, Taiwan Department of Pathology & Immunology, Baylor College of Medicine, Houston, Texas (3)
Département de Biologie Cellulaire, Université de Genève (3)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (3)
University of California, Riverside (3)
Institute of Molecular Health Sciences, Department of Biology, ETH Zürich; Zürich, Switzerland (3)
Harvard Medical School (3)
Harvard Medical School Cell Biology Department (3)
IMol Polish Academy of Sciences, Warsaw, Poland (3)
Massachusetts General Hospital Harvard Medical School (2)
1State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, China 2Department of Biochemistry and Molecular Biology, School of Life Sciences, Peking University, Beijing, China, Peking University, Beijing 100871, China (2)
Institute of Modern Biology, Nanjing University, Nanjing 210008, Jiangsu, China (2)
Institute of Biochemistry II, Goethe University School of Medicine, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Riedberg Campus, Max-von-Laue-Straße 15, 60438 Frankfurt am Main, Germany (2)
National Health Research Institutes, Taiwan (2)
Molecular Biology of Retinal Degenerations Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen (2)

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Gene expression analysis of HEK293T cells after CHMP5 gene modulation

Microarray-based gene expression analysis identified genes differentially expressed in HEK293T cells after CHMP5 gene modulation. In this study, HEK293T cells, silenced for CHMP5 using sh-CHMP5 was compared to genome wide expression changes when compared to cellular transfections with a sh-lucif...

ORGANISM(S): Homo sapiens

2010-07-08 | E-GEOD-17003 | biostudies-arrayexpress

Overexpression of USF1 in HEK293T cells

Overexpression of USF1 in HEK293T cells in vitro to ascertain the genes downstream of USF1. Will identify direct targets as well as indirect targets of USF1. Keywords: Overexpression of transcription factor to determine downstream targets. Cloned USF1 from cDNA and transiently transfected into HEK2...

ORGANISM(S): Homo sapiens

2009-09-14 | E-GEOD-17300 | biostudies-arrayexpress

RNA-sequencing in HEK293T cells under the knockdown of Arkadia or ESRP2

We evaluated the role of Arkadia and ESRP2 in HEK293T cells Expression of mRNA in HEK293T cells under the knockdown of Arkadia or ESRP2

ORGANISM(S): Homo sapiens

2015-08-01 | E-GEOD-60559 | biostudies-arrayexpress

Homo sapiens strain:HEK293T

Homo sapiens strain:HEK293T Raw sequence reads

PRJNA988277 | ENA

Homo sapiens strain:HEK293T

Homo sapiens strain:HEK293T Raw sequence reads

PRJNA1199192 | ENA

Homo sapiens strain:HEK293T

Tandem gene array espansion by BITREx in HEK293T

PRJDB18705 | ENA

Plate-based long-read single cell gene- and isoform transcriptome profiling using scLIS-seq

Single cell RNA-profiling in tandem with short-read sequencing (SR-scRNA-seq) has revolutionized the field of transcriptomics, permitting a highly granular view on cellular blood and tissue composition and the construction of human cell atlases. However, discrimination between various transcript iso...

ORGANISM(S): Homo sapiens

2025-12-31 | E-MTAB-15047 | biostudies-arrayexpress

Expression profile in HEK293T cells transfected with control or ZAPS expression vector

Analysis of HEK293T cells overexpressing ZAPS (zinc finger antiviral protein, short form; NP_078901), which is a member of the PARP (poly (ADP-ribose) polymerase)-superfamily. Results of gene profiles provide insight into the role of ZAPS in innate immunity. HEK293T cells were transfected with ZAPS ...

ORGANISM(S): Homo sapiens

2010-12-22 | E-GEOD-25471 | biostudies-arrayexpress

Gene expression profile in HEK293T cells infected with Chikungunya virus

HEK293T grown in 6 well plates were infected with CHIKV and total RNA was isolated from cells at 0, 12 and 24 hrs post infection. CHIKV gene expression signature was generated. Cells grown on 6-well plates. Three biological replicates of uninfected and two biological replicates of infected samples

ORGANISM(S): Homo sapiens

2014-01-20 | E-GEOD-49985 | biostudies-arrayexpress

microRNA expression profile in HEK293T cells infected with Chikungunya virus

HEK293T grown in 6 well plates were infected with CHIKV and total RNA was isolated from cells at 0, 12 and 24 hrs post infection. CHIKV microRNA expression signature was generated. Cells grown on 6-well plates. Three biological replicates of uninfected and two biological replicates of infected sampl...

ORGANISM(S): Homo sapiens

2014-01-01 | E-GEOD-49884 | biostudies-arrayexpress

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