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TranscriptomicsEffect of acetate during Escherichia coli switch from N-Acetyl Glucosamine to Malate
This experiment was performed to challenge E. coli response to acetate when switched from N-Acetyl Glucosamine (NAG) to malate as the main substrate. Here, E. coli BW25113 strain was grown in M9 medium complemented with 15 mM NAG, The cells were grown to mid-exponential phase in shake flasks at 37...
ORGANISM(S): Escherichia coli K-12 
2026-05-12 | E-MTAB-16650 | biostudies-arrayexpress
OtherData for: Short-chain fatty acids activate acetyltransferase p300/CBP
The short-chain fatty acids (SCFAs) acetate, propionate, and butyrate are produced in large quantities by the gut microbiome and contribute to a wide array of physiological processes. While the underlying mechanisms are largely unknown, many effects of SCFAs have been traced to changes in epigenetic...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2021-07-12 | MSV000087800 | MassIVE
OtherIncorporating LC-MS/MS Analysis and the Dereplication of Natural Product Samples into an Upper-Division Undergraduate Laboratory Course
This dataset represents a collection of chromatography fractions derived from botanical extractions. These chromatography fractions were chosen based upon demonstrated antioxidant activity following a standard DPPH assay. Echinacea-1 is the E. angustifolia sample while -2 and -3 were identified as E...
ORGANISM(S): Berberis Thunbergii (ncbitaxon:121720) Hypericum Perforatum (ncbitaxon:65561) Actaea Racemosa (ncbitaxon:64040) Sambucus Nigra (ncbitaxon:4202) Echinacea Purpurea (ncbitaxon:53751) Echinacea Angustifolia (ncbitaxon:308558) Salvia Rosmarinus (ncbitaxon:39367) Humulus Lupulus (ncbitaxon:3486) Withania Somnifera (ncbitaxon:126910) Aloe Vera (ncbitaxon:34199) 
2021-11-24 | MSV000088444 | MassIVE
TranscriptomicsPlacental gene expression in pregnancies established after the transfer of day 7 blastocysts derived from in vitro (IVP), somatic cell nuclear transfer (SCNT) and in vivo (AI) embryos
Aberrant placental gene expression associated with culture condition and/or deficiencies in transcriptome reprogramming are hypothesized to be the major cause of SCNT and IVP inefficiencies. Therefore, the main objective of this study was to invesitgate the dysregulated genes, molecular pathways and...
ORGANISM(S): Bos taurus 
2012-06-05 | E-GEOD-38512 | biostudies-arrayexpress
UnknownThe Status of Quality Improvement Programs for Pediatric Traumatic Brain Injury Care in Argentina.
Not available
S-EPMC8238872 | biostudies-literature
MetabolomicsFour Weeks of Probiotic Supplementation Alters the Metabolic Perturbations Induced by Marathon Running: Insight from Metabolomics
Few data are available that describe how probiotics influence systemic metabolism during endurance exercise. Metabolomic profiling of endurance athletes will elucidate mechanisms by which probiotics may confer benefits to the athlete. In this study, twenty-four runners (20 male, 4 female) were block...
2021-09-03 | MTBLS1357 | MetaboLights
TranscriptomicsLaser-capture microscopy coupled with Smart-seq2 (LCM-seq) for robust and efficient transcriptomic profiling of mouse and human tissues
Generally, when LCM is used in diverse transcriptomic analyses, several hundred, if not thousands, of cells are needed to obtain high quality of RNA-seq data. As some cellular populations are very small and tissue often in scarcity, we aimed to carefully document the lowest number of cells needed to...
ORGANISM(S): Homo sapiens 
2016-07-05 | E-GEOD-76514 | biostudies-arrayexpress
TranscriptomicsBovine Embryonic Developmental Competence Is Predicted By Expression Levels Of Genes Related To Oxidative Stress Response
The aberrant gene expression of early bovine embryos are a major cause for developemtal arrest. Therefore our aim was to detect transcriptomic fingerprints which correlate with the subsequent developmental competence of a two cell stage embryo. 2-cell stage embryos were bisected; one blastomere was ...
ORGANISM(S): Bos taurus 
2012-05-15 | E-GEOD-37986 | biostudies-arrayexpress
UnknownHPV DNA Testing and Mobile Colposcopy for Cervical Precancer Screening in HIV Positive Women: A Comparison Between Two Settings in Ghana and Recommendation for Screening.
Not available
S-EPMC10989037 | biostudies-literature
UnknownCervical precancer screening using self-sampling, HPV DNA testing, and mobile colposcopy in a hard-to-reach community in Ghana: a pilot study.
Not available
S-EPMC11545337 | biostudies-literature
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