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TranscriptomicsRoot transcriptome comparison between grapevines Cabernet Sauvignon, 140 Ruggeri and K51-40 (+/- salt stress)
Salt tolerance in grapevine is associated with the exclusion of chloride ions (ClM-bM-^@M-^S) from the shoot. The rate-limiting step for this process has been identified as the passage of ClM-bM-^@M-^S between the root symplast and the xylem apoplast through membrane integral proteins. To identify c...
ORGANISM(S): Vitis x champinii x Vitis riparia 
2014-09-30 | E-GEOD-57770 | biostudies-arrayexpress
TranscriptomicsMeiotic crossover hotspots and coldspots within Arabidopsis disease resistance genes
To study recombination at the fine-scale we used high-throughput sequencing to analyse >1,000 crossovers within the RAC1 R gene hotspot. This revealed focused intragenic crossovers, overlapping exons encoding the TIR, NBS and LRR domains (RAC1 pollen typing sequencing). To analyse chromatin structur...
ORGANISM(S): Arabidopsis thaliana 
2016-07-15 | E-MTAB-4556 | biostudies-arrayexpress
GenomicsChromatin immunoprecipitation analysis of CENH3 in the Arabidopsis thaliana accessions Col-0, Ler-0, Cvi-0 and Tanz-1
Chromatin immunoprecipitation analysis of CENH3 in the Arabidopsis thaliana accessions Col-0, Ler-0, Cvi-0 and Tanz-1 was performed in order to align reads to PacBio HiFi genome assemblies which contain complete centromere repeat arrays.
ORGANISM(S): Arabidopsis thaliana 
2022-08-01 | E-MTAB-11974 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Kaposi sarcoma, normal skin and primary cells
Identification of the relationships of Kaposi sarcoma (KS), normal skin to various cell cultures. The effects of KS herpes virus, the infectious cause of KS, on infected endothelial cells are also investigated.
ORGANISM(S): Homo sapiens 
2004-08-01 | E-MEXP-66 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human lymphatic endothelial cells response to Kaposi-sarcoma herpesvirus
Assessment of the effect of Kaposi-sarcoma herpesvirus upon the transcriptome of lymphatic endothelial cells and its contribution to the transcriptome of Kaposi sarcoma.
ORGANISM(S): Homo sapiens 
2006-10-23 | E-MEXP-561 | biostudies-arrayexpress
GenomicsOxford nanopore sequencing data from the Arabidopsis thaliana accessions Ler-0, Cvi-0 and Tanz-1
Oxford nanopore sequencing data from the Arabidopsis thaliana accessions Ler-0, Cvi-0 and Tanz-1
ORGANISM(S): Arabidopsis thaliana 
2022-08-06 | E-MTAB-12009 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of two populations of non-hematopoetic stem cells (MSC and MAPC) isolated from human bone marrow.
Compare the behaviour of two populations of non-hematopoetic stem cells (MSC and MAPC) isolated from human bone marrow. The effect of culture conditions on the behaviour of MSC was also characterised by isolating MSC and then culturing the cells for 96h in MAPC growth conditions
ORGANISM(S): Homo sapiens 
2008-09-01 | E-MEXP-466 | biostudies-arrayexpress
UnknownPrevalence and Distribution of Atherosclerosis in a Low- to Intermediate-Risk Population: Assessment with Whole-Body MR Angiography.
Not available
S-EPMC5979784 | biostudies-literature
TranscriptomicsFunctional enhancers at the gene-poor 8q24 cancer-linked locus
Multiple discrete regions at 8q24 were recently shown to contain alleles that predispose to many cancers including prostate, breast, and colon. These regions are far from any annotated gene and their biological activities have been unknown. Here we profiled a 5-megabase chromatin segment encompassin...
ORGANISM(S): Homo sapiens 
2009-12-18 | E-GEOD-19561 | biostudies-arrayexpress
ProteomicsAn atypical parvovirus driving chronic tubulointerstitial nephropathy and kidney fibrosis
The occurrence of a spontaneous nephropathy in laboratory mice, characterized by tubular degeneration and intranuclear inclusions, has puzzled pathologists for over four decades. While the condition takes a more severe course in immunodeficient animals suggesting an infectious cause, its etiology ha...
ORGANISM(S): Mus musculus (Mouse) 
2018-09-06 | PXD010540 | Pride
Miouse Virus Proteomics Liver 
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