Heterotrophic - OmicsDI

Show results for

Unknown (2525)
Genomics (1706)
Proteomics (78)
Transcriptomics (74)
Metabolomics (29)
Models (8)
Other (1)

Organisms

Arabidopsis thaliana (12)
Metallosphaera sedula (4)
Chlamydomonas reinhardtii (4)
Glycine max (3)
Synechocystis sp. PCC 6803 (3)
Chromochloris zofingiensis (3)
Anemonia viridis (2)
Ferroglobus placidus DSM 10642 (2)
Acidithiobacillus ferrooxidans ATCC 23270 (2)
Medicago truncatula (2)
Pseudomonas aeruginosa (2)
Dinoroseobacter shibae DFL 12 = DSM 16493 (2)
Thermosynechococcus vestitus BP-1 (2)
Crypthecodinium cohnii (2)
cellular organisms (1)
Metallosphaera sedula DSM 5348 (1)
Candidatus Pelagibacter ubique HTCC1062 (1)
Cafeteria roenbergensis virus BV-PW1 (1)
Humulus lupulus (1)
Thermoproteus tenax (1)
Ruegeria pomeroyi DSS-3 (1)
Streptomyces lividans (1)
Archaeoglobus fulgidus (1)
Trichormus variabilis ATCC 29413 (1)
Pyrococcus furiosus DSM 3638 (1)
phototrophic enrichment culture UCC-O (1)
Metallibacterium scheffleri (1)
Mariniflexile fucanivorans (1)
Polynucleobacter asymbioticus (1)
Meiothermus ruber (1)

Organisms

soil metagenome (658)
leaf metagenome (44)
synthetic metagenome (33)
Ruegeria pomeroyi DSS-3 (27)
Galdieria sulphuraria (24)
marine metagenome (20)
Cyanidioschyzon merolae (12)
mixed culture metagenome (9)
freshwater metagenome (8)
bioreactor metagenome (6)
biofilm metagenome (5)
Chromochloris zofingiensis (4)
Arabidopsis thaliana (4)
Poteriospumella lacustris (3)
Auxenochlorella protothecoides (3)
uncultured protist (3)
Chlamydomonas reinhardtii (3)
Eukaryota (3)
Auxenochlorella pyrenoidosa (3)
sludge metagenome (3)
uncultured bacterium (3)
seawater metagenome (3)
activated sludge metagenome (3)
lake water metagenome (3)
sediment metagenome (3)
Candidatus Epulonipiscium viviparus (2)
Metallosphaera sedula (2)
Dokdonia sp. Dokd-P16 (2)
Crypthecodinium cohnii (2)
Colwellia psychrerythraea (2)

Repository

ENA (1704)
pride (54)
geo (44)
biostudies-arrayexpress (31)
MetaboLights (20)
MassIVE (10)
BioModels (8)
GNPS (8)
iProX (8)
PAXDB (4)
jPOST (2)
NODE (2)
MetabolomicsWorkbench (1)

Tissue

Cell culture (11)
Photosynthetic cell (6)
Cell suspension culture (3)
Plant cell (2)
Spore (2)
Whole body (2)
Algae (1)
Aleurone layer (1)
Cotyledon (1)
Endometrial gland (1)
Endosperm (1)
Epithelial cell (1)
Gametophore (1)
Neurotoxin (1)
Permanent cell line cell (1)
Prokaryotic cell (1)
Protonema (1)

Disease

Disease free (1)
Female infertility (1)
Inflammatory and toxic neuropathy (1)

Technology Type

Mass Spectrometry (54)
Shotgun proteomics (37)
Mass spectrometry (17)
Bottom-up proteomics (10)
Data-dependent acquisition (5)
Gel-based experiment (3)
Mass spectrometry assay (2)
Data-independent acquisition (2)
NMR spectroscopy (1)
NMR (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Q Exactive (8)
Liquid Chromatography MS - negative - reverse phase (8)
Liquid Chromatography MS - positive - reverse phase (7)
Thermo Scientific LTQ FT Ultra (4)
TSQ Vantage (Thermo Scientific) (4)
Illumina HiSeq 1500 (3)
TripleTOF 6600 (2)
LTQ Orbitrap Elite (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Photo BioLector prototype (Morschett et al., 2017) Design and validation of a parallelized micro-photobioreactor enabling phototrophic bioprocess development at elevated throughput. Biotechnol Bioeng 114: 122-131. (1)
Commercial BioLector (m2p labs GmbH, Baesweiler, Germany) (1)
AB SOLiD 4 System (1)
GenePix 4000A [Axon Instruments] (1)
Illumina HiSeq 1000 (1)
Q Exactive HF (1)
Orbitrap IQ-X (1)
Q Exactive HF-X (1)
TripleTOF 5600 (1)
Gas Chromatography MS - positive - low polarity - GC-MS (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
Liquid Chromatography MS - - reverse phase (1)
5975C Series GC/MSD (Agilent) (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
LCQ Deca XP Plus (1)

Publication Date

2024 (23)
2022 (17)
2025 (15)
2023 (14)
2017 (12)
2010 (12)
2026 (12)
2021 (12)
2019 (12)
2020 (11)
2013 (7)
2018 (6)
2015 (6)
2011 (6)
2016 (5)
2012 (5)
2008 (4)
2014 (3)
2009 (3)
2005 (2)
2007 (1)
2006 (1)

UNIPROT ID/AC

14310_ARATH (2)
14332_ARATH (2)
14333_ARATH (2)
14334_ARATH (2)
14336_ARATH (2)
14337_ARATH (2)
14338_ARATH (2)
14339_ARATH (2)
2AAA_ARATH (2)
2AAG_ARATH (2)
3702.AT1G07930.1 (2)
3702.AT1G33140.1 (2)
3702.AT1G34030.1 (2)
3702.AT2G21385.4 (2)
3702.AT2G28740.1 (2)
3702.AT3G29185.2 (2)
3702.AT3G53730.1 (2)
3702.AT3G53750.1 (2)
3702.AT4G09800.1 (2)
3702.AT5G10330.1 (2)
3702.AT5G19780.1 (2)
3702.AT5G36790.1 (2)
3702.AT5G59970.1 (2)
3702.AT5G60390.1 (2)
3702.AT5G62700.1 (2)
3702.ATCG01240.1 (2)
3702.ATCG01310.1 (2)
3HID1_ARATH (2)
4CLLA_ARATH (2)
5FCLL_ARATH (2)

CHEBI ID

CHEBI:30769 (8)
CHEBI:58731 (1)
CHEBI:61715 (1)
CHEBI:144504 (1)
CHEBI:15856 (1)
CHEBI:17824 (1)
CHEBI:83905 (1)
CHEBI:32879 (1)
CHEBI:47205135 (1)
CHEBI:151 (1)
CHEBI:26907 (1)
CHEBI:62861 (1)
CHEBI:138360 (1)
CHEBI:156229 (1)
CHEBI:61056 (1)
CHEBI:57518 (1)
CHEBI:77190 (1)
CHEBI:62087 (1)
CHEBI:51310 (1)
CHEBI:16135 (1)
CHEBI:36484 (1)
CHEBI:4648 (1)
CHEBI:32968 (1)
CHEBI:64252 (1)
CHEBI:51312 (1)
CHEBI:61507 (1)
CHEBI:44147 (1)
CHEBI:60392 (1)
CHEBI:58893 (1)
CHEBI:15730 (1)

Metabolite Name

Pantothenic acid (3)
Xanthosine (3)
Tryptophan (3)
Thymidine (3)
Kynurenine (3)
Inosine (3)
FAD (3)
AMP (3)
Xanthine (3)
Phenylalanine (3)
Adenosine (3)
Isoleucine (3)
Leucine (3)
Sucrose (3)
FMN (3)
DCMP (3)
UMP (3)
Uridine (3)
Sucrose (3)
6-Phospho-D-gluconate (2)
Agmatine (2)
Trehalose (2)
Tryptamine (2)
Folic acid (2)
Adenosine 5'-monophosphate (2)
Gluconate (2)
UDP-glucuronate (2)
UDP-glucose (2)
Cholesterol sulfate (2)
Uridine (2)

First Public Date

2026 (795)
2025 (181)
2024 (109)
2023 (91)
2018 (81)
2019 (71)
2021 (62)
2020 (59)
2022 (55)
2013 (54)
2017 (43)
2014 (38)
2016 (33)
2015 (31)
2012 (1)

Modelling Approach

Ordinary differential equation model (3)
Constraint-based model (3)

Lab affiliation

Albert-Ludwigs-Universität Freiburg, Institut für Biologie III, Schänzlestr. 1, 79104 Freiburg, Germany (2)
Aix-Marseille Université, CEA, CNRS, Institute of Biosciences and Biotechnologies of Aix-Marseille, UMR 7265, CEA Cadarache, Saint-Paul-lez Durance F-13108, France (1)
Analytical Chemistry Core Lab (ACL) – Proteomics Unit King Abdullah University of Science and Technology (KAUST) Thuwal, 23955-6900, Kingdom of Saudi Arabia (1)
Basic Sciences, College of Veterinary Medicine (1)
Biochemistry & Molecular Biology, University of British Columbia, Vancouver, BC, Canada (1)
Biogroup - Group of Environmental Biotechnology Department of Chemical Engineering . Universidade de Santiago de Compostela (1)
Biological and Environmental Sciences and Engineering Division (BESE), Red Sea Research Centre (RSRC), King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Saudi Arabia (1)
Bioorganic Analytics, Institute for Inorganic and Analytical Chemistry, Friedrich Schiller University Jena, Lessingstr. 8, 07743 Jena, Gemany (1)
Center for Mechanisms of Evolution, Biodesign Institute, School of Life Sciences, Arizona State University, Tempe, Arizona, USA (1)
Departamento de Genética Molecular, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México, Mexico City, Mexico. (1)
Department of Biochemistry and Synthetic Metabolism, Max Planck Institute for terrestrial Microbiology, Marburg, Germany (1)
Department of Biochemistry, Molecular Plant Biology, Tykistökatu 6 A , Turku 20520, Finland (1)
Department of Biotechnology, Delft University of Technology. (1)
Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana 47907 Center for Plant Biology, Purdue University, West Lafayette, Indiana 47907 Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907 (1)
Department of Ecogenomics and Systems Biology, University of Vienna, Vienna, Austria. (1)
Department of Geosciences Eberhard-Karls-University Tübingen Schnarrenbergstrasse 94-96 72076 Tübingen Germany (1)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences (1)
Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia. Pok Man Leung, pok.leung@monash.edu, Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia Ralf B. Schittenhelm, ralf.schittenhelm@monash.edu, Monash Proteomics and Metabolomics Facility and Department of Biochemistry, Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia (1)
Department of Obstetrics and Gynecology, School of Medicine, Stanford University, CA, USA. Igenomix Foundation, Instituto de Investigación Sanitaria Hospital Clínico (INCLIVA), Valencia, Spain (1)
EDyP (1)
ERA Chair in Gas Fermentation Technologies, Institute of Technology, University of Tartu (1)
Faculty of biology and biotechnology Plant biochemistry Ruhr-Univerity Bochum Germany (1)
Full Professor for Analytical Chemistry Institute of Chemical Technologies and Analytics TU Wien Getreidemarkt 9/E164 A-1060 Vienna Austria (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Systems Biology Permoserstraße 15 04318 Leipzig, Germany (1)
Helmholtz Centre for Environmental Research – UFZ GmbH Department of Molecular Systems Biology Permoserstrasse 15 04316 Leipzig, Germany (1)
Institute for Biological Resources and Marine Biotechnologies (CNR), Italian National Research Council, Messina, Italy (1)
Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science and University of Maryland Baltimore County, 701 E Pratt Street, Baltimore MD, 21202, United States. (1)
Interfaculty Institute for Microbiology and Infection Medicine, Organismic Interactions Department, Tübingen University, Auf der Morgenstelle 28, 72076 Tübingen, Germany (1)
Jean-Michel CAMADRO, PhD DR1 CNRS "Mitochondria, Metals and Oxidative Stress" group leader Head "Mass Spectrometry Lab and Proteomics core Facility" Jacques Monod Institute UMR7592 CNRS - Paris University 15 rue Hélène Brion 75205 Paris Cedex 13, FRANCE (1)
Jean-Michel CAMADRO, PhD DR1 CNRS "Mitochondria, Metals and Oxidative Stress" group leader Head "Mass Spectrometry Lab and Proteomics core Facility" Jacques Monod Institute UMR7592 CNRS - Paris University 15 rue Hélène Brion 75205 Paris Cedex 13, FRANCE tel : 33(1)57278029 (1)

IsPrivate

False (8)

Model Flag

Non Kinetic (2)

Submitter Keywords

FROG (1)

Classification

bacteria (13)

Modification

Not available (2)

Study type

Transcription profiling by array (22)
RNA-seq of coding RNA (7)
High-throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (283)
2021 (231)
2025 (202)
2023 (198)
2024 (195)
2020 (187)
2019 (170)
2018 (168)
2016 (155)
2017 (151)
2015 (130)
2014 (90)
2013 (79)
2012 (51)
2011 (49)
2010 (37)
2008 (29)
2026 (27)
2009 (24)
2007 (15)
2006 (15)
2005 (12)
2002 (12)
2001 (12)
2004 (11)
2003 (10)
2000 (6)
1998 (4)
1999 (2)
1997 (1)

Previous page
1 / 443
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 443
Next page

Sort by:

Relevance

Page size

Diel investments in phytoplankton metabolite production influenced by associated heterotrophic bacteria

Not available

ORGANISM(S): Thalassiosira pseudonana CCMP1335

ST001512 | MetabolomicsWorkbench

Transcription profiling of hyperthermophilic crenarchaeum Thermoproteus tenax to compare autotrophic growth on CO2/H2 versus heterotrophic growth on glucose using a focussed central carbohydrate metabolism DNA microarray

In order to unravel the role of regulation on transcript level in the central carbohydrate metabolism (CCM) of Thermoproteus tenax (glycolytic/gluconeogenic carbon switch), the focused DNA microarray was constructed by using ORFs supposed to be involved in the CCM pathways. Transcriptional profiling...

ORGANISM(S): Thermoproteus tenax

2008-02-05 | E-MEXP-1376 | biostudies-arrayexpress

Regulation mechanism of gibberellic acid-3 for astaxanthin biosynthesis in heterotrophically growing Chromochloris zofingiensis

Chromochloris zofingiensis has been proved as a potential resource for large-scale astaxanthin production, but little information of phytohormones on growth and astaxanthin accumulation could be obtained. This study explored the impact of gibberellic acid-3 (GA3) on growth and astaxanthin generat...

2024-08-13 | MTBLS10762 | MetaboLights

Heterotrophic protist

Heterotrophic protist Raw sequence reads

PRJNA1284632 | ENA

Marine heterotrophic protist

Marine heterotrophic protist Metagenome

PRJNA1297321 | ENA

Proteome analysis of photoautotrophic and heterotrophic cells in a red alga Galdieria partita

Galdieria partita is a unicellular red alga which switches between photoautotrophic and heterotrophic growth depending on the presence or absence of sugar. In order to elucidate the characteristics of protein expression in G. partita cells under photoautotrophic and heterotrophic conditions, proteom...

ORGANISM(S): Galdieria Partita

2025-05-22 | PXD058210 | JPOST Repository

Heterotrophic Flagellates

Single Cell Genomics of Heterotrophic Flagellates Genome sequencing and assembly

PRJNA379597 | ENA

heterotrophic marine thaumarchaea

metagenome-assembled genomes of heterotrophic marine thaumarchaea

PRJNA636088 | ENA

Autotrophic and heterotrophic denitrification

Autotrophic and heterotrophic denitrification Raw sequence reads

PRJNA669601 | ENA

Aerobic heterotrophic denitrification

Roothans et al., analyzed heterotrophic denitrification processes that can be an important source of nitrous oxide. We employed planktonic nitrification-inhibited denitrifying enrichment cultures under alternating oxic-anoxic conditions. The dynamic conditions resulted in a general presence of the d...

ORGANISM(S): Escherichia coli

2024-07-17 | PXD042057 | Pride

Previous page
1 / 443
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 443
Next page

Sort by:

Relevance

Page size

4421 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Lab affiliation

Tags

IsPrivate

Model Flag

Submitter Keywords

Classification

Modification

Study type

Release Date

OmicsDI is part of the ELIXIR infrastructure

Tweets