Highly acidic proteins

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Unknown (482)
Transcriptomics (102)
Proteomics (84)
Genomics (51)
Metabolomics (3)
Other (2)

Organisms

Allexis (65)
Homo sapiens (52)
Mus musculus (28)
Saccharomyces cerevisiae (11)
Drosophila melanogaster (11)
Schizosaccharomyces pombe (8)
Caenorhabditis elegans (4)
Rattus norvegicus (3)
Escherichia coli str. K-12 substr. MG1655 (3)
Rhizobium leguminosarum (2)
Arabidopsis thaliana (2)
Mus musculus domesticus x M. m. molossinus (1)
Hydrangea macrophylla (1)
Leishmania infantum (1)
Rana pirica (1)
Staphylococcus aureus subsp. aureus str. Newman (1)
Mytilus galloprovincialis (1)
Streptococcus mutans UA159 (1)
Candida albicans SC5314 (1)
Listeria monocytogenes EGD-e (1)
Bacillus subtilis (1)
Streptococcus pneumoniae (1)
Acinetobacter baumannii (1)
Escherichia coli K-12 (1)
Canis lupus familiaris (1)
Gallus gallus (1)
Escherichia coli (1)
Atrina pectinata (1)
Magallana gigas x Magallana angulata (1)
Amphistegina lobifera (1)

Organisms

Homo sapiens (3)
Mus musculus (2)
Escherichia coli str. K-12 substr. MG1655 (1)
Saccharomyces cerevisiae BY4743 (1)
Pocillopora damicornis (1)
Drosophila melanogaster (1)
Canis lupus familiaris (1)
hot springs metagenome (1)

Repository

biostudies-arrayexpress (130)
pride (65)
ENA (16)
MassIVE (12)
geo (7)
MetaboLights (3)
GPMDB (2)
jPOST (2)
PeptideAtlas (2)
EGA (1)
iProX (1)
PAXDB (1)

Tissue

Cell culture (15)
Skeleton (10)
Epithelial cell (7)
Lung (4)
B cell (3)
Permanent cell line cell (3)
Others (2)
Blood plasma (2)
Bone marrow (2)
Brain (2)
Early embryonic cell (2)
Embryo (2)
Spleen (2)
T cell (2)
Blood (1)
Blood cell (1)
Blood serum (1)
Egg (1)
Embryonic stem cell (1)
Epithelial cell of cervix (1)
Fibroblast (1)
Gill (1)
HEK-293 cell (1)
HeLa cell (1)
Kidney (1)
Kidney cell (1)
Liver (1)
Lymph node (1)
Macrophage (1)
Monocyte (1)

Disease

Wounds and Injuries (11)
Lung adenocarcinoma (3)
Normal (2)
Breast cancer (2)
Not Available (2)
Cystic fibrosis (2)
Pulmonary tuberculosis (2)
Healthy (1)
Non-small cell lung carcinoma (1)
Albright's hereditary osteodystrophy (1)
Amyloidosis (1)
Cervix carcinoma (1)
Disease free (1)
Influenza (1)
Lung cancer (1)
Neuroblastoma (1)
Plasmodium falciparum malaria (1)

Technology Type

Mass Spectrometry (65)
Shotgun proteomics (44)
Affinity purification coupled with mass spectrometry proteomics (8)
Bottom-up proteomics (7)
Top-down proteomics (4)
Data-dependent acquisition (3)
Mass spectrometry (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Gel-based experiment (2)
SRM/MRM (2)
Mass spectrometry assay (1)
Data-independent acquisition (1)

Instrument Platform

AB SOLiD 4 System (3)
NextSeq 500 (3)
Illumina HiSeq 2500 (2)
Illumina NovaSeq 6000 (2)
Instrument (2)
LTQ (2)
Q Exactive (2)
LTQ Orbitrap XL (2)
Axon GenePix 4000B scanning hardware (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
LCQ Deca XP Plus (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
MaXis (1)
Orbitrap Eclipse (1)
Orbitrap Fusion ETD (1)
Q Exactive HF (1)
Q Exactive Plus (1)
SolariX (1)
Liquid Chromatography MS - - - Q Exactive (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2020 (22)
2015 (19)
2014 (19)
2013 (18)
2012 (16)
2010 (14)
2011 (12)
2025 (12)
2018 (11)
2008 (11)
2022 (10)
2023 (9)
2021 (9)
2016 (9)
2024 (8)
2019 (6)
2017 (6)
2009 (5)
2026 (3)
2007 (2)
2006 (1)

UNIPROT ID/AC

6PGL_HELPY (1)
85962.C694_00040 (1)
85962.C694_00275 (1)
85962.C694_00510 (1)
85962.C694_00935 (1)
85962.C694_01080 (1)
85962.C694_01205 (1)
85962.C694_02750 (1)
85962.C694_03200 (1)
85962.C694_03205 (1)
85962.C694_03530 (1)
85962.C694_03705 (1)
85962.C694_03715 (1)
85962.C694_03730 (1)
85962.C694_04635 (1)
85962.C694_04640 (1)
85962.C694_05100 (1)
85962.C694_05145 (1)
85962.C694_05150 (1)
85962.C694_05210 (1)
85962.C694_05650 (1)
85962.C694_05655 (1)
85962.C694_05750 (1)
85962.C694_05755 (1)
85962.C694_06925 (1)
85962.C694_06985 (1)
85962.C694_07065 (1)
85962.C694_07285 (1)
85962.C694_07295 (1)
85962.C694_07300 (1)

ENSEMBL ID

ENSG00000147251 (1)

CHEBI ID

CHEBI:134206 (2)
CHEBI:30818 (2)
CHEBI:89884 (2)
CHEBI:168338 (2)
CHEBI:166485 (2)
CHEBI:191252 (2)
CHEBI:133694 (2)
CHEBI:133568 (2)
CHEBI:88526 (2)
CHEBI:37946 (2)
CHEBI:28623 (2)
CHEBI:73051 (2)
CHEBI:77042 (2)
CHEBI:76341 (2)
CHEBI:165848 (2)
CHEBI:133693 (2)
CHEBI:133677 (2)
CHEBI:179445 (2)
CHEBI:84562 (2)
CHEBI:84814 (2)
CHEBI:64681 (2)
CHEBI:165872 (2)
CHEBI:138529 (2)
CHEBI:74534 (2)
CHEBI:53014 (2)
CHEBI:73028 (2)
CHEBI:143243 (2)
CHEBI:1606 (2)
CHEBI:16628 (2)
CHEBI:89312 (2)

Metabolite Name

2-methylserine (2)
Threonylphenylalanine (2)
Valylleucine (2)
Valylglutamine (2)
Ethyl beta-glucopyranoside (2)
S-methylcysteine sulfoxide (2)
N1-methylinosine (2)
N6,N6-dimethyllysine (2)
N,N-dimethylalanine (2)
3-amino-2-piperidone (2)
3-formylindole (2)
Hydroxyasparagine** (2)
Gamma-glutamylserine (2)
N-acetylglucosamine/N-acetylgalactosamine (2)
N-acetylmethionine sulfoxide (2)
Fructosyllysine (2)
Phenylalanylalanine (2)
Phenylalanylglycine (2)
Leucylglycine (2)
2-oxoarginine* (2)
Argininate* (2)
4-hydroxyglutamate (2)
Formiminoglutamate (2)
N-acetyl-cadaverine (2)
5-methylthioribose** (2)
Methylphosphate (2)
N6-carboxymethyllysine (2)
Malonylcarnitine (2)
1-methyl-4-imidazoleacetate (2)
Glutamate, gamma-methyl ester (2)

First Public Date

2021 (3)
2019 (2)
2014 (2)
2026 (1)
2024 (1)
2023 (1)
2022 (1)
2020 (1)
2018 (1)
2017 (1)
2016 (1)
2013 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (45)
ChIP-seq (29)
ChIP-chip by tiling array (15)
RNA-seq of coding RNA (14)
Other (6)
ChIP-chip by array (5)
Methylation profiling by high throughput sequencing (4)
Methylation profiling by array (3)
Transcription profiling by tiling array (2)
Unknown experiment type (1)
Cell line - High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
RIP-seq (1)
MicroRNA profiling by array (1)
CUT&RUN (1)
RNA-seq of non coding RNA (1)

Release Date

2015 (47)
2021 (41)
2022 (39)
2019 (37)
2013 (37)
2014 (34)
2012 (33)
2024 (32)
2017 (32)
2023 (30)
2010 (30)
2011 (27)
2016 (26)
2025 (25)
2020 (23)
2018 (22)
2008 (20)
2009 (16)
2006 (10)
2004 (9)
2007 (8)
2005 (6)
2003 (6)
2001 (5)
2026 (4)
1998 (4)
2002 (3)
1999 (3)
2000 (2)
1994 (1)

Lab affiliation

Department of Ecology & Evolutionary Biology, University of California, Los Angeles, CA (8)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (3)
Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA (2)
1 Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic 2 Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic (1)
1. Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK 2. Technical University, Berlin 13355, Germany (1)
Aquatic Plant Genomics and Genetic Breeding, Wuhan Botanical Garden (1)
Associate Professor, Head of Biochemistry, School of Biomolecular and Biomedical Science, Associate Dean for Widening Participation, College of Science Conway Institute room F059 University College Dublin +353 1 716 6723 (1)
Barnett Institute of Chemical and Biological Analysis and Department of Chemistry & Chemical Biology, Northeastern University, Boston, MA, USA. (1)
Biomedical Center Munich Molecular Biology Großhaderner Strasse 9 82152 Planegg-Martinsried (1)
CR Université Grenoble Alpes, Institute for Advanced Biosciences, INSERM U1209, CNRS UMR5309, La Tronche, France. (1)
Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing, China (1)
Centre for Proteome Research Institute of Integrative Biology University of Liverpool Biosciences Building Crown Street Liverpool L69 7ZB UK (1)
Comprehensive Pneumology Center (CPC), University Hospital, Ludwig-Maximilians University, Helmholtz Zentrum München, Member of the German Center for Lung Research (DZL), Munich, Germany (1)
Dalian Institute of Chemical Physics, Chinese Academy of Sciences (1)
Department of Analytical Biochemistry, Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands (1)
Department of Applied Chemistry, Institute of Natural Science, Global Center for Pharmaceutical Ingredient Materials, Kyung Hee University, Yongin, Republic of Korea. & Department of Biomedical Science and Technology, Kyung Hee Medical Science Research Institute, Kyung Hee University, Seoul, Republic of Korea. (1)
Department of Biology, University of North Dakota, Grand Forks, ND 58202, USA (1)
Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, 02138 (1)
Department of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (1)
Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, MI 48824, USA (1)
Department of Ecology and Evolution, University of Lausanne, CH-1015 Lausanne, Switzerland (1)
Department of Experimental and Translational Ophthalmology, University Medical Center, Johannes Gutenberg University, Mainz, Germany (1)
Department of Marine Biology, University of Haifa, Israel (1)
Director of The Breast Tumor Immunology Laboratory Women’s Cancer Program Dana-Farber Cancer Institute Instructor in Medicine Harvard Medical School (1)
Director | Proteome Exploration Laboratory | Beckman Institute California Institute of Technology Division of Biology and Biological Engineering (1)
Division of Chemical Biology and Medicinal Chemistry, Center for Integrative Chemical Biology and Drug Discovery, UNC Eshelman School of Pharmacy Lineberger Comprehensive Cancer Center Department of Biochemistry and Biophysics University of North Carolina, Chapel Hill, NC, USA (1)
Division of Redox Regulation, DKFZ-ZMBH Alliance, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany (1)
EDyP (1)
Gulbenkian Institute for Molecular Medicine (GIMM), Lisbon, Portugal (1)
Harvard Medical School, Systems Biology Department, Boston,MA, 02115 (1)

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Modern and Fossil Coral Skeletal Proteomes - Fossil Soluble Trypsin1

Here we report the first recovery, sequencing, and identification of fossil biomineral proteins from a Pleistocene invertebrate. Fossils of the Caribbean stony coral Orbicella annularis retain total hydrolyzable amino acids of a similar composition to extracts from modern O. annularis skeletons and ...

ORGANISM(S): Orbicella annularis

2020-10-27 | PXD017816 | Pride