Ho David D - OmicsDI

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Caenorhabditis elegans (2)
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biostudies-arrayexpress (80)
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pride (2)
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Mass spectrometry (2)
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2011 (11)
2014 (9)
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2026 (2)
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UNIPROT ID/AC

O00187 (1)
P01024 (1)
P02741 (1)
P04003 (1)
P06681 (1)
P0C0L4 (1)
P0C0L5 (1)
Q15485 (1)

CHEBI ID

CHEBI:16919 (2)
CHEBI:18186 (2)
CHEBI:37998 (2)
CHEBI:83058 (2)
CHEBI:86260 (2)
CHEBI:18132 (1)
CHEBI:38325 (1)
CHEBI:48705 (1)
CHEBI:48706 (1)
CHEBI:506227 (1)
CHEBI:10072 (1)
CHEBI:10362 (1)
CHEBI:10642 (1)
CHEBI:111517 (1)
CHEBI:131388 (1)
CHEBI:131434 (1)
CHEBI:131454 (1)
CHEBI:131623 (1)
CHEBI:131654 (1)
CHEBI:131655 (1)
CHEBI:131658 (1)
CHEBI:131659 (1)
CHEBI:131660 (1)
CHEBI:131661 (1)
CHEBI:131662 (1)
CHEBI:131663 (1)
CHEBI:131665 (1)
CHEBI:131667 (1)
CHEBI:131668 (1)
CHEBI:131687 (1)

Metabolite Name

(R)-salsolinol (1)
1,3,7-trimethylurate (1)
1,3-dimethylurate (1)
1,3-propanediol (1)
1,7-dimethylurate (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0)* (1)
1-(1-enyl-stearoyl)-GPE (P-18:0)* (1)
1-linoleoyl-GPE (18:2)* (1)
1-methyl-4-imidazoleacetate (1)
1-methyladenine (1)
1-methyladenosine (1)
1-methylguanidine (1)
1-methylhistamine (1)
1-methylhistidine (1)
1-methylhypoxanthine (1)
1-methylnicotinamide (1)
1-methylurate (1)
1-methylxanthine (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2)* (1)
1-palmitoyl-2-(9,10-epoxystearoyl)phosphatidylcholine (1)
1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) (1)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (1)
1-palmitoyl-GPC (16:0) (1)
1-palmitoyl-GPE (16:0) (1)
1-palmitoyl-GPI* (16:0) (1)
1-stearoyl-2-oleoyl-GPC (18:0/18:1) (1)
10-hydroxystearate (1)
12,13-DiHOME (1)
12-dehydrocholate (1)
12-ketolithocholate (1)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (1)
Pharmacodynamics model (1)

Study type

Transcription profiling by array (49)
RNA-seq of coding RNA (15)
Transcription profiling by tiling array (4)
ChIP-seq (4)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Genotyping by array (1)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
Genotyping by high throughput sequencing (1)

Release Date

2022 (28)
2025 (26)
2021 (20)
2011 (19)
2024 (18)
2014 (16)
2015 (13)
2023 (13)
2013 (12)
2012 (12)
2017 (11)
2020 (10)
2010 (9)
2026 (8)
2016 (8)
2009 (8)
2019 (8)
2008 (7)
2018 (7)
2007 (6)
2005 (4)

Lab affiliation

Department of Biochemistry and Pharmacology, The Bio21 Molecular Science & Biotechnology Institute, University of Melbourne, 30 Flemington Rd, Parkville Victoria 3052, Australia (1)
Department of Biochemistry and Pharmacology, The Bio21 Molecular Science & Biotechnology Institute, University of Melbourne, Melbourne, Australia (1)

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Recipient HO-1 inducibility is essential for posttransplant hepatic HO-1 expression and graft protection: From bench-to-bedside.

Not available

S-EPMC6349504 | biostudies-literature

Myeloid HO-1 modulates macrophage polarization and protects against ischemia-reperfusion injury.

Not available

S-EPMC6237471 | biostudies-literature

Effects of grape seed-derived polyphenols on amyloid beta-protein self-assembly and cytotoxicity.

Not available

S-EPMC2583320 | biostudies-literature

Heme Oxygenase-1 dictates innate - adaptive immune phenotype in human liver transplantation.

Not available

S-EPMC6688971 | biostudies-literature

Transcription profiling of human Th cells induced to polarize to Th1 or Th2 direction in the presence or absence of TGFbeta

Th1 and Th2 cells arise from a common precursor cell in response to triggering through the TCR and cytokine receptors for IL-12 or IL-4. This leads to activation of complex signaling pathways, which are not known in detail. Disturbances in the balance between type 1 and type 2 responses can lead to ...

ORGANISM(S): Homo sapiens

2007-12-12 | E-GEOD-2770 | biostudies-arrayexpress

Developmental timecourse of C. elegans small RNAs with 5p monophosphates

These datasets profile the expression of small RNAs with 5p monophosphates and 3p hydroxyls (including miRNAs, 21U-RNAs) across C. elegans development and in dauer, glp-4 mutant, and mixed-stage wt worms. These datasets were prepared in the David P. Bartel laboratory using T4 RNA ligase Rnl2(1-249)....

ORGANISM(S): Caenorhabditis elegans

2008-06-15 | E-GEOD-11734 | biostudies-arrayexpress

Treatment of lean and diet-induced obesity (DIO) mice with a novel stable obestatin analogue alters plasma metabolite levels as detected by untargeted LC-MS metabolomics

Introduction: Obestatin is a controversial gastrointestinal peptide purported to have metabolic actions. Objectives: This study investigated whether treatment with a stable obestatin analogue (PEG-OB(Cys10, Cys13) changed plasma metabolite levels firstly in lean and subsequently in diet-induced obes...

2017-07-25 | MTBLS334 | MetaboLights

Lockwood2006 - Alzheimer's Disease PBPK model

Lockwood2006 - AlzheimersDisease PBPK model A mathematical model to predict the effectiveness of CI-1017 (muscarinic agonist) for Alzheimer's disease by evaluating changes in ADAS-cog score. This model is described in the article: Application of clinical trial simulation to compare pr...

2024-09-02 | BIOMD0000000673 | BioModels

Antiviral metabolite 3'-Deoxy-3',4'-didehydro-cytidine is detectable in serum and identifies acute viral infections including COVID-19

BACKGROUND: There is a critical need for rapid viral infection diagnostics to enable prompt case identification in pandemic settings and support targeted antimicrobial prescribing.

METHODS: Using untargeted high-resolution liquid chromatography coupled with...

2022-02-10 | MTBLS718 | MetaboLights

TGF-beta-mediated microRNA expression in breast cancer cells

We utilized 3D-organotypic cultures whose physical properties were altered by inclusiong of type I collagen to create biomechanically rigid microenvironments that approximated those typically observed in primary mammary tumors. Compliant 3D-organotypic cultures were also generated to recapitulate t...

ORGANISM(S): Mus musculus

2012-10-31 | E-GEOD-41274 | biostudies-arrayexpress

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