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Turnip mosaic virus (1)

Organisms

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mouse gut metagenome (1)
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Repository

biostudies-arrayexpress (1013)
pride (95)
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Tissue

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Disease

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Pre-tumoral lesion in a mouse model of human adamantinomatous craniopharyngioma (ACP) (1)
Internal Carotid Artery Stenosis (NCI Metathesaurus C0340569) has DiseaseStaging Asymptomatic (1)
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ARR7ox-4-11 (1)
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Technology Type

Mass Spectrometry (95)
Shotgun proteomics (49)
Mass spectrometry (26)
Bottom-up proteomics (18)
Data-dependent acquisition (12)
Affinity purification coupled with mass spectrometry proteomics (8)
Gel-based experiment (8)
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Chemical cross-linking coupled with mass spectrometry proteomics (4)
SRM/MRM (2)
Illumina HiSeq 2000 (1)
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NMR spectroscopy (1)
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Mass spectrometry imaging (1)

Instrument Platform

Illumina HiSeq 4000 (21)
Illumina NovaSeq 6000 (15)
NextSeq 500 (15)
Illumina HiSeq 2500 (9)
Illumina HiSeq 2000 (8)
IScan (2)
GenePix 4000B [Axon Instruments] (2)
Illumina NovaSeq X (2)
N/A (2)
Illumina MiSeq (2)
Illumina HiSeq 3000 (2)
DNBelab C Series High-throughput Single-cell RNA Library Preparation Set V3.0 (MGI Tech) (1)
DNBelab C-TaiM droplet generator (MGI Tech) (1)
Avatarget 12-well dual-chamber organ-on-chip system; AvatarFlow Organ Chip Flow Initiation Controller System (Avatarget Co., Ltd., Suzhou, China) (1)
BD FACS Aria II (1)
BGISEQ-50 (1)
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High Sensitivity DNA kit (1)
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(Make:PerkinElmer,Model:ScanArray 4000XL) (1)
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Agilent G2565BA scanner (1)
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Unspecified (1)
Agilent G2505C scanner (1)
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428 [Affymetrix] (1)
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ScanArray [PerkinElmer] (1)
ScanArray 5000 [PerkinElmer] (1)

Publication Date

2010 (135)
2012 (113)
2014 (111)
2013 (110)
2015 (99)
2011 (93)
2008 (76)
2016 (58)
2009 (52)
2021 (42)
2022 (37)
2007 (33)
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2017 (23)
2020 (22)
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2026 (20)
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2004 (3)

UNIPROT ID/AC

P04003 (1)
Q15485 (1)
O00187 (1)
P01024 (1)
P06681 (1)
P0C0L4 (1)
P0C0L5 (1)
P02741 (1)

CHEBI ID

CHEBI:16919 (13)
CHEBI:17268 (12)
CHEBI:16737 (12)
CHEBI:30769 (12)
CHEBI:15428 (11)
CHEBI:17568 (11)
CHEBI:17368 (11)
CHEBI:16708 (10)
CHEBI:16750 (10)
CHEBI:15741 (10)
CHEBI:7916 (10)
CHEBI:17750 (10)
CHEBI:15891 (10)
CHEBI:18183 (10)
CHEBI:18050 (10)
CHEBI:32816 (10)
CHEBI:30915 (10)
CHEBI:16414 (10)
CHEBI:15603 (10)
CHEBI:17895 (10)
CHEBI:17596 (10)
CHEBI:17992 (9)
CHEBI:48430 (9)
CHEBI:16755 (9)
CHEBI:17562 (9)
CHEBI:506227 (7)
CHEBI:18132 (7)
CHEBI:48706 (1)
CHEBI:48705 (1)
CHEBI:38325 (1)

Metabolite Name

Taurine (6)
Creatinine (6)
Creatine (6)
Xanthosine (5)
Hypoxanthine (5)
AMP (5)
Creatinine (5)
Uracil (5)
Glycine (5)
Uracil (5)
Isovaleric acid (5)
Ornithine (5)
Palmitic acid (5)
L-Tryptophan (5)
Uric acid (5)
Guanosine (5)
Uridine (5)
D-Fructose (4)
L-Cystine (4)
Inosine (4)
Guanosine (4)
Cytosine (4)
Cytidine (4)
Adenine (4)
Histamine (4)
Creatine (4)
Lactate (4)
Beta-alanine (4)
Sucrose (4)
Betaine (4)

IsPrivate

False (3)

First Public Date

2014 (6)
2026 (3)
2024 (3)
2025 (2)
2023 (2)
2022 (2)
2021 (2)
2020 (1)
2019 (1)

Modelling Approach

Ordinary differential equation model (2)
Pharmacodynamics model (1)

Study type

Transcription profiling by array (585)
RNA-seq of coding RNA (124)
ChIP-seq (82)
RNA-seq of non coding RNA (43)
Unknown experiment type (29)
Methylation profiling by array (19)
RNA-seq of coding RNA from single cells (16)
Methylation profiling by high throughput sequencing (13)
Comparative genomic hybridization by array (12)
ChIP-chip by tiling array (11)
Other (11)
ChIP-chip by array (9)
Transcription profiling by tiling array (8)
Cell line - High-throughput sequencing (7)
Genotyping by array (6)
Proteomic profiling by array (6)
DNA-seq (4)
Cell line - One-color microarray (3)
Transcription profiling by RT-PCR (3)
Single nucleus RNA sequencing (3)
MicroRNA profiling by array (3)
RNA-seq of total RNA (2)
Transcription profiling by MPSS (1)
FAIRE-seq (1)
Transcription profiling by SAGE (1)
Baseline (1)
Differential (1)
Plant - High-throughput sequencing (1)
Human - One-color microarray (1)
Animal - High-throughput sequencing (1)

Release Date

2022 (831)
2021 (781)
2025 (719)
2024 (712)
2023 (705)
2020 (541)
2019 (409)
2018 (358)
2015 (334)
2016 (298)
2017 (290)
2014 (276)
2013 (232)
2012 (204)
2010 (199)
2011 (170)
2008 (121)
2026 (117)
2009 (109)
2007 (53)
2005 (33)
2006 (31)
2004 (10)
2003 (9)
2000 (6)
2001 (4)
2002 (2)
1999 (1)
1998 (1)
1997 (1)

Lab affiliation

Institute of Pharmaceutical Chemistry, Goethe University, Max-von-Laue-Str. 9, 60438 Frankfurt am Main, Germany Structural Genomics Consortium (SGC), Buchmann Institute for Life Sciences, Max-von-Laue-Str. 15, 60438 Frankfurt am Main, Germany German Cancer Consortium (DKTK) Mainz/Frankfurt, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany (3)
Cardiovascular and Metabolic Diseases, Duke-NUS Medical School, Singapore (2)
Department of Biochemistry & Molecular Biology, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark (2)
University of Bayreuth, Universitätsstrasse 30, 95447 Bayreuth, Germany (2)
Advanced Water Managment Center, The University of Queensland (1)
Assistant Professor of Medicine (Hematology) Senior Fellow, Duke Aging Center Duke Molecular Physiology Institute Duke University School of Medicine (1)
Bavarian Center for Biomolecular Mass Spectrometry, Technical University of Munich, Freising, Germany (1)
Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Biotherapeutics Translational Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), 125 Gwahak-ro, Yuseong-gu, Daejeon, Korea (1)
Boston University (1)
Cancer Biology laboratory, INIBIBB_UNS_CONICET (1)
Cancer Science Institute of Singapore, National University of Singapore (1)
Cedars Sinai Medical Center (1)
Cell Biology and Physiology, University of North Carolina at Chapel Hill, North Carolina, USA (1)
Centre for Organismal Studies Dep. Molecular Evolution and Genomics University of Heidelberg 69120 Heidelberg Germany (1)
Chair, Cancer Biology & Genetics Program, SKI; Chair, Geoffrey Beene Cancer Research Center; Investigator, Howard Hughes Medical Institute; (1)
Characterization and Comparability Lab, National Institute for Bioprocessing Research and Training - NIBRT, Dublin, Ireland (1)
Core facility for mass spectrometry and proteomics ZMBH, University Heidelberg Im Neuenheimer Feld 282 69120 Heidelberg Germany (1)
Dana-Farber Cancer Institute 450 Brookline Avenue, Longwood Center 3217 Boston, MA 02215 (1)
Department of Biochemistry and Molecular Biology and The Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, Victoria, 3010, Australia. (1)
Department of Biochemistry and Molecular Biology, Mitochondria lab, Monash University, Clayton 3800, Australia (1)
Department of Biochemistry and Pharmacology, The Bio21 Molecular Science & Biotechnology Institute, University of Melbourne, 30 Flemington Rd, Parkville Victoria 3052, Australia (1)
Department of Biomedical Science and Environmental Biology, College of Life Science, Kaohsiung Medical University (1)
Department of Cancer Research and Molecular Medicine Faculty of Medicine Laboratory Centre, 5th floor. Erling Skjalgssons gt. 1 Norwegian University of Science and Technology NTNU 7006 Trondheim, Norway Tel: +47 72573076; Fax: +47 72576400 Cell. phone: +47 91825455 (1)
Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN 47907, USA Purdue Institute for Drug Discovery, Purdue University, 720 Clinic Drive, West Lafayette, IN 47907, USA Purdue Institute for Cancer Research, Purdue University, 201 S. University Street, West Lafayette, IN 47907, USA (1)
Department of Clinical Infection, Microbiology, and Immunology; Institute for Infection, Veterinary, and Ecological Sciences (IVES), University of Liverpool, L69 7ZB, Liverpool, United Kingdom. (1)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (1)
Department of Dermatology, Medical University Vienna, Austria (1)
Department of Developmental Biology, University of Pittsburgh, USA (1)

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Diagnostic Potential of Plasma IgG N-glycans in Discriminating Thyroid Cancer from Benign Thyroid Nodules and Healthy Controls

BACKGROUND: Novel biomarkers are urgently needed to distinguish between benign and malignant thyroid nodules and detect thyroid cancer in the early stage. The associations between serum IgG N-glycosylation and thyroid cancer risk have been revealed. We aimed to explore the potent...

2021-09-01 | MTBLS2935 | MetaboLights

Gene expression signatures of HO-1 in BeWo cells

Heme Oxygenase-1 (HO-1) is expressed in many cancers and influences the growth, survivall and metastasis of tumors, however, the molecular mechanisms remains largely unknown. To identify a common mechanism of action of HO-1 in cancer, we studied the global effect of HO-1 on the transcriptome of mul...

ORGANISM(S): Homo sapiens

2011-02-15 | E-GEOD-20404 | biostudies-arrayexpress

The glycosyltransferase UGT76B1 modulates N-hydroxy-pipecolic acid homeostasis and plant immunity

The trade-off between growth and defense is a critical aspect of plant immunity. Therefore, the plant immune response needs to be tightly regulated. Salicylic acid (SA) is an important plant hormone regulating defense against biotrophic pathogens. Recently, N-hydroxy-pipecolic acid (NHP) was identif...

2022-02-28 | MTBLS2334 | MetaboLights

The effect of HO-1 overexpression on microRNA transcriptome in NCI-H292 lung cancer cells

The aim was to determine the effect of heme oxygenase-1 (HO-1) overexpression on microRNA transcriptome in human non-small cell lung carcinoma cell line (NCI-H292). Since the cells of different HO-1 genotypes were used (cells are after retroviral transduction with empty vector with normal level of H...

ORGANISM(S): Homo sapiens

2013-04-27 | E-GEOD-37779 | biostudies-arrayexpress

N-(2'-Hydroxyphenyl)-2-Propylpentanamide (HO-AAVPA) Inhibits HDAC1 and Increases the Translocation of HMGB1 Levels in Human Cervical Cancer Cells.

Not available

S-EPMC7461584 | biostudies-literature

Geometry-Driven Field-Induced Single-Ion Magnetism in Hexagonal Bipyramidal Tb<sup>3+</sup> and Ho<sup>3+</sup> Complexes.

Not available

S-EPMC12570130 | biostudies-literature

The hydro-chloride salt of 4-hy-droxy-N,N-di-n-propyl-tryptamine (4-HO-DPT).

Not available

S-EPMC9462155 | biostudies-literature

siRNAs 15-29 nucleotides long with 100 percent hit to Turnip mosaic virus clone GBR98

Mustard (Brassica juncea) was tested for Turnip mosaic virus infection. Small RNA of the plant was extracted and converted to DNA according to Ho, T., et al. (2006) Journal of Virological Methods 136:217-223, with primers modified to contain 454 adapter nucleotide sequences. The DNA then passed qua...

ORGANISM(S): Turnip mosaic virus

2008-09-11 | E-GEOD-12053 | biostudies-arrayexpress

Inhibition of dendritic cell maturation and effector function

The initiation of donor derived dendritic cell (DC) adhesion and migration are one of the key events mediated by ischemia reperfusion injury (IRI) following solid organ transplantation. Recently we have been able to demonstrate that a single donor treatment with the synthetic metalloporphyrin cobalt...

ORGANISM(S): Mus musculus

2010-05-18 | E-GEOD-8452 | biostudies-arrayexpress

The solid-state conformation of the topical antifungal agent O-naphthalen-2-yl N-methyl-N-(3-methylphenyl)carbamothioate.

Not available

S-EPMC6218884 | biostudies-literature

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