Ho Samantha S - OmicsDI

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Unknown (3)
Genomics (3)
Transcriptomics (2)
Metabolomics (1)

Organisms

Homo sapiens (4)
Mus musculus (1)

Repository

EGA (3)
biostudies-arrayexpress (2)
MetaboLights (1)

Technology Type

Illumina OmniQuad 2.5 - CNVpartition (1)
Mass spectrometry (1)

Instrument Platform

Flow injection analysis MS - positive (1)
Flow injection analysis MS - negative (1)

Publication Date

2014 (1)
2013 (1)
2023 (1)

CHEBI ID

CHEBI:11814 (1)
CHEBI:165842 (1)
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CHEBI:86350 (1)
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CHEBI:24040 (1)

Metabolite Name

Propionyl coenzyme A (1)
Phosphatidic Acid (1)
Ketoglutaric acid (1)
D-myo-Inositol-1,4,5-triphosphate (1)
Deoxyguanylate (1)
Cytidine 5-diphosphocholine (1)
Acetylamino-acetic acid (1)
6-Deoxy-L-galactonic acid (1)
3-Phosphoadenosine 5-phosphosulfate (1)
3-hydroxypentanedioic acid (1)
3-Hydroxybutyryl coenzyme A (1)
2-Deoxyuridine 5-monophosphate (1)
2-Deoxy-D-ribonic acid (1)
2-Deoxy-5-cytidylic acid (1)
2,3-Diphospho-D-glyceric acid (1)
2-(Hydroxymethyl)butanoic acid (1)
Uridine 5-diphosphogalactose (1)
Pyridoxamine-5-phosphate (1)
N-Hexanoyl-glycine (1)
Ne-Acetyl-lysine (1)
Nalpha-Acetyl-L-lysine (1)
L-a-Aspartyl-L-phenylalanine (1)
D-galactaric acid (1)
A-Methylbutyrylglycine (1)
Adenosine 5-phosphosulfate (1)
Uridine 5-diphospho-N-acetylgalactosamine (1)
S-(5-Adenosyl)-L-methionine (1)
Riboflavin 5-monophosphate (1)
N-a-Acetyl-L-ornithine (1)
N,N-Diacetylchitobiose (1)

Study type

Transcription profiling by array (2)

Release Date

2024 (2)
2014 (1)
2013 (1)
2016 (1)

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Low grade gliomas

Categorisation of LGGs related to their lesion site (infratentorial vs. supratentorial) 40 Low grade gliomas samples

ORGANISM(S): Homo sapiens

2013-09-21 | E-GEOD-28238 | biostudies-arrayexpress

RB Dysfunction in Pancreatic Cancer Enables TGF-beta to Promote Proliferation

Pooled KRC (LSL-KrasG12D; Rb1L/L; Pdx1-Cre: oncogenic Kras and deleted Rb1 in the pancreas) cells derived from 2 month old mice were compared to pooled KC (LSL-KrasG12D; Pdx1-Cre: oncogenic Kras in the pancreas) cells derived from 8 month old mice.

ORGANISM(S): Mus musculus

2014-02-09 | E-MEXP-3988 | biostudies-arrayexpress

Protein-metabolite interactomics of carbohydrate metabolism reveal regulation of lactate dehydrogenase

Metabolic networks are interconnected and influence diverse cellular processes. The protein-metabolite interactions that mediate these networks are frequently low affinity and challenging to systematically discover. We developed mass spectrometry integrated with equilibrium dialysis for the disco...

2023-08-07 | MTBLS7237 | MetaboLights

Genotype - samples

PNET genotyping

EGAD00010000260 | EGA

Molecular Sub-grouping of CNS-PNET

In our study we aimed to define CNS-PNET subgroups. We performed Expression, Genotyping and/or Immunohistochemistry on 142 samples from 20 worldwide centers. Using these techniques, we have identified three molecular subgroups with distinct expression and copy number patterns, as well as, unique c...

EGAS00000000116 | EGA

Annie Huang and the Hospital for Sick Children

Data Access Committee EGAC01000000015

EGAC01000000015 | EGA

Enhancing cognitive performance prediction by white matter hyperintensity connectivity assessment.

Not available

S-EPMC11629703 | biostudies-literature

AI is a viable alternative to high throughput screening: a 318-target study.

Not available

S-EPMC10987645 | biostudies-literature

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).

Not available