Hoffman A S AS - OmicsDI

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Unknown (1428)
Transcriptomics (93)
Proteomics (32)
Genomics (19)
Metabolomics (10)

Organisms

Homo sapiens (61)
Saccharomyces cerevisiae (27)
Mus musculus (21)
Apis mellifera (6)
Rattus norvegicus (6)
Schizosaccharomyces pombe (3)
prokaryotic environmental samples (3)
Sus scrofa (2)
Drosophila melanogaster (2)
Saccharomyces cerevisiae x Saccharomyces uvarum (1)
Triticum aestivum (1)
Pseudomonas aeruginosa (1)
Cystoisospora suis (1)
Escherichia coli (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)

Organisms

Homo sapiens (7)

Repository

biostudies-arrayexpress (91)
pride (30)
EGA (10)
MetaboLights (10)
ENA (8)
geo (3)
PeptideAtlas (2)

Tissue

Cell culture (7)
Epithelial cell (3)
Others (2)
Skeletal muscle (2)
T cell (2)
Blood (1)
Blood cell (1)
Cell suspension culture (1)
Epididymal white adipose tissue (1)
Fat cell (1)
Leg muscle (1)
Macrophage (1)
Megakaryocyte (1)
Paneth cell of epithelium of small intestine (1)
Small intestine (1)
Stem cell (1)
White adipose tissue (1)

Disease

Mild cystic fibrosis, pulmonary disease (1)
Metabolic syndrome (1)
Bacterial infectious disease (1)
Cervix carcinoma (1)
Huntington Disease (1)
Neurodevelopmental delay (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (30)
Shotgun proteomics (14)
Mass spectrometry (9)
Bottom-up proteomics (9)
Data-dependent acquisition (8)
Data-independent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Gel-based experiment (2)
Top-down proteomics (2)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, ILLUMINA (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
All-ion fragmentation (1)
DiaPASEF (1)
Sodium dodecyl sulfate polyacrylamide gel electrophoresis (1)

Instrument Platform

Axon GenePix 4000B scanning hardware (6)
Liquid Chromatography MS - positive - reverse phase (6)
NextSeq 500 (4)
Illumina NovaSeq 6000 (3)
MA900, Sony (2)
10x Chromium Controller (2)
GenePix 4000B [Axon Instruments] (2)
LTQ Orbitrap Velos (2)
Illumina NovaSeq X (1)
Illumina HiSeq 2000 (1)
Flame ionisation detector MS - (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive (1)

Publication Date

2010 (20)
2015 (14)
2023 (12)
2025 (10)
2007 (9)
2022 (7)
2008 (7)
2021 (6)
2012 (6)
2009 (6)
2026 (5)
2011 (5)
2005 (5)
2019 (4)
2016 (3)
2014 (3)
2013 (3)
2004 (3)
2017 (2)
2024 (2)
2018 (2)
2006 (1)
2020 (1)

UNIPROT ID/AC

A0A024R563 (2)
A0A024RAN2 (2)
A0A024RC46 (2)
A0A0A0MR66 (2)
A0A0A0MSA7 (2)
A0A0C4DG89 (2)
A0FGR8 (2)
A0FGR8-2 (2)
A0FGR8-6 (2)
A0MZ66 (2)
A1L170 (2)
A1X283 (2)
A3KN83 (2)
A5A3E0 (2)
A5YM69 (2)
A6NFI3 (2)
A6NMQ1 (2)
A7E2V4 (2)
A8CG34 (2)
A8MQ03 (2)
A9IYQ1 (2)
B3KML9 (2)
B4DKM5 (2)
B4DPR2 (2)
B4DRV9 (2)
B4DY08 (2)
B4E3A4 (2)
B4E3H1 (2)
B5MBZ0 (2)
B5MCI0 (2)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15741 (2)
CHEBI:16010 (2)
CHEBI:16196 (2)
CHEBI:173703 (2)
CHEBI:18012 (2)
CHEBI:18257 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:30769 (2)
CHEBI:30915 (2)
CHEBI:32816 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64563 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:10136 (1)
CHEBI:116314 (1)
CHEBI:131342 (1)
CHEBI:1427 (1)
CHEBI:145227 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Succinate (2)
Taurocholic acid (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-2-stearoyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine (1)
13(S)-HODE methyl ester (1)
13-Keto-9Z,11E-octadecadienoic acid (1)
16-Hydroxyhexadecanoic acid (1)
17(18)-EpETE (1)

First Public Date

2024 (5)
2020 (1)
2014 (1)
2013 (1)

Study type

Transcription profiling by array (64)
Comparative genomic hybridization by array (9)
RNA-seq of coding RNA from single cells (6)
Unknown experiment type (3)
Other (2)
RNA-seq of coding RNA (2)
Cell line - Single-cell sequencing (1)
ChIP-chip by array (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)

Release Date

2021 (154)
2022 (143)
2023 (128)
2020 (128)
2025 (115)
2024 (115)
2018 (91)
2017 (89)
2019 (85)
2015 (84)
2016 (67)
2014 (59)
2012 (45)
2010 (45)
2011 (43)
2013 (31)
2009 (30)
2008 (18)
2026 (14)
2007 (13)
2006 (6)
2005 (5)
2004 (3)
2002 (3)
2000 (2)
2003 (1)
2001 (1)
1999 (1)

Lab affiliation

Cornell University Department of Microbiology (3)
Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA (2)
Molecular Genetics, RPTU Kaiserslautern, Germany (2)
The University of Sydney (2)
95 Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, 31077, France (1)
Associate Professor of Biochemistry Schulich School of Medicine and Dentistry Scientist, Children’s Health Research Institute (CHRI) Medical Sciences Building 358 Western University London, Ontario N6A 5C1, Canada (1)
Biomedical Center, LMU Munich Molecular Biology Großhaderner Strasse 9 82152 Planegg-Martinsried Phone: (089) 2180 75420 (1)
Charles Perkins Centre, School of Life and Environmental Sciences and Sydney Medical School, University of Sydney, Camperdown, NSW, Australia (1)
Cologne Excellence Cluster on Cellular Stress Responses in Ageing-Associated Diseases (CECAD), Center for Molecular Medicine Cologne (CMMC), and Institute for Mitochondrial Diseases and Ageing, Medical Faculty, University of Cologne D-50931 Cologne, Germany. (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario N6A 5C1, Canada. Department of Chemistry, The University of Western Ontario, London, Ontario N6A 5C1, Canada (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada. (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada. 2 Bioinformatic Solutions Inc., Waterloo, Ontario, Canada. Department of Chemistry, The University of Western Ontario, London, Ontario, Canada. (1)
Department of Chemistry, Vanderbilt University (1)
Department of Molecular Biophysics and Biochemistry Department of Chemistry Yale University New Haven, CT USA (1)
IRIC-Université de Montréal (1)
Laboratory of Genetics, The Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA. (1)
Novartis Institutes for BioMedical Research, Novartis Campus, CH-4056 Basel, Switzerland (1)
Principal Investigator | The Ernst and Kaethe Ascher Career Development Chair | The Department of Immunology and Regenerative Biology | Weizmann-UK Building, Room 17 | Weizmann Institute of Science | Rehovot 76100, ISRAEL | Tel: +972-8-934-4937 (1)
Senior Lecturer in Transfusion Medicine / Consultant Haematologist, University of Cambridge / NHS Blood and Transplant, Wellcome-MRC Cambridge Stem Cell Institute, Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, Puddicombe Way, Cambridge, CB2 0AW, United Kingdom (1)
Sylvester Comprehensive Cancer Center, Miami, FL, US. Department of Pathology and Laboratory Medicine, University of Miami Miller School of Medicine, Miami, Florida, US. (1)
The Kinghorn Cancer Center, Garvan Institute of Medical Research, Darlinghurst, NSW, 2010, Australia. St. Vincent's Clinical School, Faculty of Medicine, UNSW, Darlinghurst, NSW, Australia (1)
The University of Melbourne (1)
University of Florida (1)
Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald (1)
institute parasitology, University of veterinary medicine vienna, Veterinärplatz 1, 1210 vienna, austria (1)

Tags

xref:PubMed:38847231 (2)
xref:PubMed:33647277 (1)
xref:PubMed:16478798 (1)
xref:PubMed:14762175 (1)
xref:PubMed:41008516 (1)
xref:PubMed:25313409 (1)

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Comparative profiling in 13 muscle disease groups

Summary: Genetic disorders of muscle cause muscular dystrophy, and are some of the most common inborn errors of metabolism. Muscle also rapidly remodels in response to training and innervation. Muscle weakness and wasting is important in such conditions as aging, critical care medicine, space flig...

ORGANISM(S): Homo sapiens

2005-10-14 | E-GEOD-3307 | biostudies-arrayexpress

Comparison of natural yeast hybrids

Analysis of genomic variation in several Saccharomyces cerevisiae x S. kudriavzevii natural hybrids S. cerevisiae and S. kudriavzevii yeasts have been described among wine strains. These strains exhibit enological properties of interest for the wine industry. A preliminary characterization of these ...

ORGANISM(S): Saccharomyces cerevisiae

2010-06-19 | E-GEOD-12774 | biostudies-arrayexpress

Saccharomyces cerevisiae: DSB mapping by Break-chip in a two-color experiment (G1 control vs. S phase samples)

Break-chip (microarray-based double strand break mapping) analysis of mec1 cells recovering from 200 mM hydroxyurea in the presence or absence of 0.8 micromolar bathophenanthroline sulfonate (BPS). We asked if the presence of an iron chelator, BPS, during cell recovery from transient exposure to 200...

ORGANISM(S): Saccharomyces cerevisiae

2015-01-12 | E-GEOD-64446 | biostudies-arrayexpress

Transcription profiling time series of human skeletal muscle samples from metabolic syndrome patients following defined exercise (STRRIDE study)

STRRIDE is an exercise intervention study of different doses and intensities in overweight women and men with the metabolic syndrome. We profiled biopsies from 3 female and 3 male STRRIDE subjects in the â€œhighâ€ exercise group (2,200 kCal/wk). Muscle biopsies were profiled at entry (0h), and afte...

ORGANISM(S): Homo sapiens

2007-08-02 | E-GEOD-1295 | biostudies-arrayexpress

A Mosquito Pick-and-Place System for PfSPZ-based Malaria Vaccine Production.

Not available

S-EPMC7978227 | biostudies-literature

Tyrosine supplementation rescues a growth defect in a humanized ¬S. cerevisiae model of YARS1 associated CMT-DI

Dominant pathogenic alleles in tyrosyl-tRNA synthetase (YARS1) are associated with Charcot–Marie–Tooth disease (CMT), a progressive peripheral neuropathy for which no disease-modifying therapies currently exist. While recent advances in amino acid supplementation therapies suggest potential benefit ...

ORGANISM(S): Saccharomyces cerevisiae (Baker's yeast)

2026-09-14 | PXD078702 | Pride

Replication origin mapping of mitotic and meiotic cells in different conditions

Identification of sites of replication initiation by copy number analysis, comparing samples before and after entry into S phase. Experiments were performed in the following strains and conditions for mitotic cells: cdc25-22 (temperature-sensitive mutation arrests cells at G2/M for synchrony, otherw...

ORGANISM(S): Schizosaccharomyces pombe

2014-02-20 | E-GEOD-53879 | biostudies-arrayexpress

Adapting Safety Check as a Universal Suicide Prevention Strategy in Pediatric Primary Care.

Not available

S-EPMC8429196 | biostudies-literature

Metabolomics to elucidate the effects of novel sustainable feed additives in the feed of farmed salmon (HoloFood Trial A - seaweed-dose response)

Testing the effect of blue mussel ensilage as a novel cost-efficient protein feed source for Atlantic salmon feed. Fermentation of novel raw materials for fish feed is a new practice with little prior experience of direct relevance to aquaculture and fish farming. In Trial A, an alternative marin...

2023-06-13 | MTBLS4381 | MetaboLights

Gene expression and muscle fiber function in a porcine ICU model

Background: Skeletal muscle wasting and impaired muscle function in response to mechanical ventilation and immobilization in intensive care unit (ICU) patients are clinically challenging partly due to (i) the poorly understood intricate cellular and molecular networks; and (ii) the unavailability of...

ORGANISM(S): Sus scrofa

2009-08-31 | E-GEOD-16348 | biostudies-arrayexpress

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