Hoffman K K - OmicsDI

Show results for

Unknown (1847)
Transcriptomics (43)
Genomics (19)
Proteomics (17)
Metabolomics (11)

Organisms

Homo sapiens (41)
Lactiplantibacillus paraplantarum (15)
Methanobrevibacter cuticularis (15)
Brevibacillus sp. (15)
Camelidae (15)
Bigelowiella natans (15)
Albugo laibachii Nc14 (15)
Methermicoccus shengliensis DSM 18856 (15)
Thalassiosira pseudonana (15)
Pongo abelii (15)
Acinetobacter baylyi ADP1 (15)
Calvadosia cruxmelitensis (15)
Leishmania tropica (15)
Cancer (15)
Sterolibacterium denitrificans (15)
NEWT:185687 (15)
Thermococcus eurythermalis (15)
Rickettsia rickettsii str. 'Sheila Smith' (15)
Alphavirus (15)
Albugo candida AcNc2 (15)
Amblyrhynchus cristatus (15)
Bacillus cereus AH187 (15)
Mus musculus (8)
Saccharomyces cerevisiae (3)
Sus scrofa (3)
Rattus norvegicus (2)
Apis mellifera (1)
Schizosaccharomyces pombe (1)
Plasmodium falciparum (1)
Triticum aestivum (1)

Repository

biostudies-arrayexpress (45)
EGA (17)
pride (15)
MetaboLights (10)
MassIVE (2)
GNPS (1)

Tissue

Cell culture (3)
T cell (2)
Megakaryocyte (1)
Epididymal white adipose tissue (1)
Blood (1)
Urine (1)
Blood cell (1)
Cell suspension culture (1)
Brain (1)

Disease

Burkitt's lymphoma (1)
Normal (1)
Neurodevelopmental delay (1)

Technology Type

Mass Spectrometry (15)
Mass spectrometry (9)
Bottom-up proteomics (6)
Shotgun proteomics (6)
Data-dependent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
DiaPASEF (1)
Gel-based experiment (1)
All-ion fragmentation (1)
Data-independent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
MA900, Sony (2)
10x Chromium Controller (2)
Illumina NovaSeq 6000 (2)
GenePix 4000B [Axon Instruments] (1)
Illumina NovaSeq X (1)
DNBSEQ-G400 (1)
NextSeq 500 (1)
MaXis (1)
LTQ FT (1)
QE+ (1)
Q Exactive (1)
Flame ionisation detector MS - (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2023 (12)
2007 (8)
2010 (6)
2026 (5)
2015 (5)
2025 (4)
2022 (3)
2021 (3)
2014 (3)
2013 (3)
2012 (3)
2011 (3)
2008 (3)
2024 (3)
2016 (2)
2006 (2)
2009 (1)
2005 (1)
2004 (1)
2017 (1)
2019 (1)

CHEBI ID

CHEBI:35038 (3)
CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:143757 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:143745 (2)
CHEBI:139138 (2)
CHEBI:34494 (2)
CHEBI:80774 (2)
CHEBI:34687 (2)
CHEBI:173703 (2)
CHEBI:64563 (2)
CHEBI:16010 (2)
CHEBI:27432 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:27997 (2)
CHEBI:32816 (2)
CHEBI:16196 (2)
CHEBI:30915 (2)
CHEBI:18257 (2)
CHEBI:30769 (2)
CHEBI:18012 (2)
CHEBI:15741 (2)
CHEBI:181874 (1)
CHEBI:195266 (1)
CHEBI:195267 (1)
CHEBI:195265 (1)
CHEBI:166710 (1)

Metabolite Name

Tris(2-butoxyethyl) phosphate (3)
Cholic acid (3)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Dibutyl phthalate (DBP) (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
Elaidic acid (2)
Monoolein (2)
Lyso-PC(16:0) (2)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
Succinate (2)
Taurocholic acid (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
9(10)-EpOME (2)
NCGC00168953-02_C47H76O17_(3beta,5xi,9xi,22beta)-22,24-Dihydroxyolean-12-en-3-yl 6-deoxy-alpha-L-mannopyranosyl-(1->2)-alpha-L-arabinopyranosyl-(1->2)-beta-D-glucopyranosiduronic acid (1)
Sodium taurochenodeoxycholate (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
3beta-Hydroxy-5-cholenoic acid (1)
2-((4R)-4-((3R,5R,6S,9S,10R,13R,14S,17R)-3,6-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
2-((R)-4-((3R,5S,7S,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanamido)ethane-1-sulfonic acid (1)
Diphenylphosphate|Diphenyl hydrogen phosphate (1)
Methyl 2-(3-oxo-2-pentylcyclopentyl)acetate (1)
Dodecanoylcarnitine (1)
9,10-dihydrojasmonic acid (1)
All-cis-5,8,11,14,17-icosapentaenoic acid (1)
Conjugated linoleic Acid (10E,12Z) (1)
3-(Sulfodisulfanyl)-L-alanine (1)
Sn-glycerol-3-phosphate (1)

Study type

Transcription profiling by array (32)
RNA-seq of coding RNA from single cells (4)
Comparative genomic hybridization by array (3)
Other (2)
Methylation profiling by array (2)
ChIP-seq (1)
DNA-seq (1)

Release Date

2022 (176)
2021 (166)
2023 (160)
2024 (156)
2025 (155)
2020 (147)
2019 (128)
2018 (119)
2017 (103)
2015 (97)
2016 (91)
2014 (89)
2012 (53)
2011 (53)
2013 (48)
2010 (45)
2009 (27)
2008 (25)
2026 (20)
2007 (14)
2006 (6)
2001 (4)
2002 (3)
2000 (3)
2005 (2)
2004 (2)

Lab affiliation

Molecular Genetics, RPTU Kaiserslautern, Germany (2)
95 Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, 31077, France (1)
James McGill Professor of Neurology and Neurosurgery and Anatomy and Cell Biology Montreal Neurological Institute-Hospital McGill, Montreal CANADA (1)
Senior Lecturer in Transfusion Medicine / Consultant Haematologist, University of Cambridge / NHS Blood and Transplant, Wellcome-MRC Cambridge Stem Cell Institute, Jeffrey Cheah Biomedical Centre, Cambridge Biomedical Campus, University of Cambridge, Puddicombe Way, Cambridge, CB2 0AW, United Kingdom (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada (1)
Associate Professor of Biochemistry Schulich School of Medicine and Dentistry Scientist, Children’s Health Research Institute (CHRI) Medical Sciences Building 358 Western University London, Ontario N6A 5C1, Canada (1)
Cologne Excellence Cluster on Cellular Stress Responses in Ageing-Associated Diseases (CECAD), Center for Molecular Medicine Cologne (CMMC), and Institute for Mitochondrial Diseases and Ageing, Medical Faculty, University of Cologne D-50931 Cologne, Germany. (1)
Biomedical Center, LMU Munich Molecular Biology Großhaderner Strasse 9 82152 Planegg-Martinsried Phone: (089) 2180 75420 (1)
institute parasitology, University of veterinary medicine vienna, Veterinärplatz 1, 1210 vienna, austria (1)
Laboratory of Genetics, The Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA 92037, USA. (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada. (1)
Department of Pharmaceutical Sciences, School of Pharmacy and Pharmaceutical Sciences, Binghamton University – SUNY, Johnson City, New York 13790, United States (1)
Universitätsmedizin Greifswald Interfakultäres Institut für Genetik und Funktionelle Genomforschung Abteilung für Funktionelle Genomforschung Felix-Hausdorff-Straße 8 17487 Greifswald (1)
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA (1)