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TranscriptomicsOryza sativa, Nipponbare RNA-Seq - Conserved Poaceae Specific Genes Project
Illumina RNA Sequencing (RNA-Seq) of Oryza sativa, Nipponbare for the Conserved Poaceae Specific Genes project. Authors: Robin Buell, Ning Jiang, Haining Lin, Rebecca Davidson, Malali Gowda, John Hamilton, Brieanne Vaillancourt
ORGANISM(S): Oryza sativa Japonica Group 
2012-04-04 | E-MTAB-2039 | biostudies-arrayexpress
TranscriptomicsTranscriptomic profiling permits the identification of pollutant sources and effects in ambient water samples
The delta smelt (Hypomesus transpacificus) is a pelagic fish species endemic to the Sacramento-San Joaquin Estuary in Northern California, listed as endangered under both the USA Federal and Californian State Endangered Species Acts and acts as an indicator of ecosystem health in its habitat range. ...
ORGANISM(S): Hypomesus transpacificus 
2012-09-20 | E-GEOD-40991 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of tissues of Arabidopsis plants overexpressing artificial microRNAs vs wild_type and respective target gene mutants
Tissues of Arabidopsis plants overexpressing artificial microRNAs were compared to wild_type and respective target gene mutants (duplicate arrays)
ORGANISM(S): Arabidopsis thaliana 
2006-04-01 | E-TABM-63 | biostudies-arrayexpress
TranscriptomicsThe effect of growth rate on pyrazinamide activity in Mycobacterium tuberculosis; insights for early bactericidal activity
Background: Pyrazinamide (PZA) plays an essential part in the shortened 6-month tuberculosis (TB) treatment course due to its activity against slow-growing, semi-dormant organisms. We tested the paradigm that PZA preferentially targets slow growing cells of Mycobacterium tuberculosis that remain aft...
ORGANISM(S): Mycobacterium tuberculosis H37Rv 
2016-03-25 | E-MTAB-4093 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis Cul3a-1 mutant and control plants during germination in far red light
Parallel germination of Cul3a-1 mutant and control plants in far red light.
ORGANISM(S): Arabidopsis thaliana 
2005-01-01 | E-MEXP-175 | biostudies-arrayexpress
TranscriptomicsDifferential gene expression profiles between myeloid-biased and lymphoid-biased hematopoietic stem cells.
Array analysis of My-bi and Ly-bi HSC identifies candidate molecules for myeloid-bias. Collectively the data show that HSC in adults are largely epigenetically fixed in differentiation and self-renewal behavior. A direct examination of the epigenetic mechanisms that imprint HSC is difficult. However...
ORGANISM(S): Mus musculus 
2013-05-01 | E-GEOD-41702 | biostudies-arrayexpress
TranscriptomicsFed L1 larvae total RNA levels by microarray
Here we exploit the essential process of XM-bM-^@M-^Pchromosome dosage compensation to elucidate basic mechanisms that control the assembly, genomeM-bM-^@M-^Pwide binding, and function of gene regulatory complexes that act over large chromosomal territories. We demonstrate that a subunit of C. ele...
ORGANISM(S): Caenorhabditis elegans 
2011-03-01 | E-GEOD-25831 | biostudies-arrayexpress
TranscriptomicsMicroRNA profiling of human papillary thyroid carcinoma and normal thyroid to assess the role of miRNA genes in papillary thyroid carcinoma
Apart from alterations in the RET/PTC-RAS-BRAF pathway, comparatively little is known about the genetics of papillary thyroid carcinoma (PTC). We show that numerous miRNAs are transcriptionally up-regulated in PTC tumors compared with unaffected thyroid tissue. A set of 5 miRNAs including the 3 most...
ORGANISM(S): Homo sapiens 
2005-02-28 | E-TABM-68 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of pig reveals brief hypercholesterolemia induces changes in pig aortic endothelia
Hypercholesterolemia Study
ORGANISM(S): Sus scrofa 
2009-10-01 | E-CBIL-43 | biostudies-arrayexpress
TranscriptomicsGenome-Wide Gene Expression Profiles in the Pancreatic Lymph Nodes of At-Risk Autoantibody Positive Individuals
Type 1 diabetes (T1D) is a polygenic autoimmune disorder caused by autoreactive T cells that recognize pancreatic islet antigens and subsequently destroy insulin-producing β-cells. Pancreatic lymph nodes (PLN) are an essential site for the development of T1D, where tolerance to pancreatic self-antig...
ORGANISM(S): Homo sapiens 
2015-03-03 | E-GEOD-66413 | biostudies-arrayexpress
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