Holobiont - OmicsDI

Show results for

Unknown (597)
Genomics (376)
Proteomics (20)
Metabolomics (17)
Transcriptomics (10)
Models (1)
Other (1)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (16)
Andropogon gerardi (16)
Bacteria (16)
Bartonella quintana JK 31 (16)
Canis lupus familiaris (16)
Cnidaria (16)
Ectopseudomonas oleovorans CECT 5344 (16)
Ensifer adhaerens (16)
Halictus scabiosae (16)
Human immunodeficiency virus 1 (16)
Mesocricetus auratus (16)
Methylohalobius crimeensis 10Ki (16)
Miscanthus x giganteus (16)
Mus musculus (16)
Panicum virgatum (16)
Pseudomonas aeruginosa SJTD-1 (16)
Rabies virus Nishigahara RCEH (16)
Rattus norvegicus (16)
Rattus rattus (16)
Rhodococcus jostii RHA1 (16)
Rhodopseudomonas palustris (16)
Schizosaccharomyces pombe 927 (16)
Orbicella faveolata (2)
Amphimedon queenslandica (2)
Homo sapiens (1)
Dickeya solani MK10 (1)
Acropora formosa (1)
Acropora palmata (1)
Nematostella vectensis (1)
Equus caballus (1)

Organisms

coral metagenome (28)
sponge metagenome (8)
algae metagenome (4)
plant metagenome (4)
Fimbriaphyllia paradivisa (3)
Gigantidas haimaensis (3)
Porites lutea (3)
seagrass metagenome (3)
coral reef metagenome (3)
Orbicella faveolata (2)
Pocillopora acuta (2)
Stylophora pistillata (2)
Acropora palmata (2)
marine metagenome (2)
Hypogymnia physodes (1)
Zalaria obscura (1)
Bathymodiolus marisindicus (1)
Coitocaecum parvum (1)
Penicillium rubens (1)
Pseudomonas sp. 313 (1)
Staphylococcus sp. E463 (1)
Vibrio sp. 712i1 (1)
Dickeya solani MK10 (1)
Montipora aequituberculata (1)
Pleuractis granulosa (1)
Acropora formosa (1)
Trichodesmium (1)
uncultured Trichodesmium sp. (1)
Agaricia lamarcki (1)
Exaiptasia diaphana (1)

Repository

ENA (375)
pride (16)
MetaboLights (11)
geo (9)
GNPS (6)
MassIVE (5)
BioModels (1)
biostudies-arrayexpress (1)
EGA (1)

Tissue

Whole body (3)
Coral nubbin (1)
Esophageal gland (1)
Gill (1)
Trophosome tissue (1)

Technology Type

Mass Spectrometry (16)
Mass spectrometry (8)
Shotgun proteomics (7)
Gel-based experiment (4)
Data-dependent acquisition (3)
Data-independent acquisition (3)
NMR spectroscopy (2)
Illumina HiSeq 2500 (1)
Mass spectrometry assay (1)
Top-down proteomics (1)

Instrument Platform

Q Exactive Plus (6)
Liquid Chromatography MS - positive - reverse phase (6)
Liquid Chromatography MS - positive - hilic (3)
Liquid Chromatography MS - negative - reverse phase (3)
7T LTQ FT Ultra, Thermo Fisher Scientific (2)
Q Exactive HF (2)
Orbitrap Exploris 240 (1)
Impact II (1)
Varian (1)
MS Imaging - negative (1)
MS Imaging - positive (1)
Gas Chromatography MS - (1)
TSQ Vantage (Thermo Scientific) (1)
Gas Chromatography MS - positive (1)
MS Imaging - (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2022 (10)
2026 (7)
2025 (7)
2024 (6)
2021 (5)
2019 (3)
2023 (2)
2020 (2)
2010 (1)
2015 (1)
2014 (1)
2009 (1)
2018 (1)
2017 (1)
2016 (1)

CHEBI ID

CHEBI:17750 (5)
CHEBI:18123 (4)
CHEBI:72998 (3)
CHEBI:16708 (3)
CHEBI:16235 (3)
CHEBI:16335 (3)
CHEBI:15891 (3)
CHEBI:16919 (3)
CHEBI:28825 (2)
CHEBI:82984 (2)
CHEBI:69061 (2)
CHEBI:16457 (2)
CHEBI:17256 (2)
CHEBI:17126 (2)
CHEBI:18186 (2)
CHEBI:18295 (2)
CHEBI:17234 (2)
CHEBI:27592 (2)
CHEBI:64489 (2)
CHEBI:16750 (2)
CHEBI:28790 (2)
CHEBI:17154 (2)
CHEBI:17929 (2)
CHEBI:16566 (2)
CHEBI:15940 (2)
CHEBI:15355 (2)
CHEBI:17509 (2)
CHEBI:16467 (2)
CHEBI:17203 (2)
CHEBI:16449 (2)

Metabolite Name

Trigonelline (3)
Betaine (3)
Guanine (3)
Creatine (3)
Β-alanine betaine (2)
N(omega),N(omega)-dimethyl-L-arginine (2)
S,S-dimethyl-beta-propiothetin (2)
Homarine (2)
20-Carboxy-leukotriene B4 (2)
Glycine betaine (2)
Alanine betaine (2)
Stearoyllactic acid (2)
Soyacerebroside I (2)
3-Oxotetradecanoic acid (2)
4,8 Dimethylnonanoyl carnitine (2)
L-valine (2)
L-tyrosine (2)
L-phenylalanine (2)
L-proline (2)
Cortolone (2)
Choline (2)
Taurine (2)
L-arginine (2)
Corchorifatty acid F (2)
Semilepidinoside B (2)
Adenosine (2)
Adenine (2)
Γ-butyrobetaine (1)
Sulfobetaine (1)
Sphingenine (1)

IsPrivate

False (1)

Submitter Keywords

Manuscript Accepted (1)

First Public Date

2026 (47)
2025 (46)
2024 (46)
2022 (40)
2020 (36)
2023 (34)
2021 (30)
2018 (25)
2017 (18)
2019 (15)
2016 (12)
2015 (11)
2014 (7)
2013 (7)
2012 (1)

Classification

bacteria (3)
fungi (1)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (1)

Release Date

2025 (77)
2022 (72)
2023 (69)
2021 (64)
2020 (58)
2024 (52)
2018 (43)
2019 (40)
2017 (32)
2016 (23)
2015 (18)
2014 (12)
2013 (10)
2012 (10)
2026 (8)
2010 (3)
2011 (3)
2009 (2)
2008 (2)

Lab affiliation

1 SaBio, Instituto de Investigación en Recursos Cinegéticos (IREC), Consejo Superior de Investigaciones Científicas (CSIC), Universidad de Castilla-La Mancha (UCLM)-Junta de Comunidades de Castilla-La Mancha (JCCM), Ronda de Toledo 12, 13005 Ciudad Real, Spain (1)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (1)
Department of Biology,Hong Kong Baptist University, Hong Kong, China (1)
Department of Geoscience, University of Calgary, Calgary, AB, Canada; Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina, USA (1)
Department of Plant and Microbial Biology, North Carolina State University, Raleigh, North Carolina, USA (1)
Genome Sciences, University of Washington (1)
Hollings Marine Laboratory (1)
Hong Kong University of Science and Technology (1)
Institute for Sustainable Plant Protection of the National Research Council of Italy, IPSP - CNR (1)
Institute of Pharmacy, University of Greifswald, Germany Institute of Marine Biotechnology, Greifswald, Germany (1)
Istituto per la Protezione Sostenibile delle Piante, Consiglio Nazionale delle Ricerche, IPSP-CNR, Strada delle Cacce 73, 10135 Turin, Italy (1)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V., Dortmund, Germany (1)
Novo Nordisk Foundation Center for Biosustainability, DTU Biosustain, Kgs. Lyngby, Denmark (1)
Ocean Science Department, Hkust (1)
School of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand (1)
University of Greifswald, Institute of Microbiology, Department of Microbial Physiology and Molecular Biology (1)

Previous page
1 / 103
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 103
Next page

Sort by:

Relevance

Page size

Correspondence of coral holobiont metabolome with symbiotic bacteria, archaea and Symbiodinium communities

Microbial symbiotic partners, such as those associated with reef-building corals, mediate biochemical transformations that influence host performance and survival. While evidence suggests microbial community composition partly accounts for differences in coral physiology, how these symbionts affect ...

2017-08-01 | MTBLS342 | MetaboLights

A multi-omics approach to unravel the interaction between heat and drought stress in the Arabidopsis thaliana holobiont

The impact of combined heat and drought stress was investigated in Arabidopsis thaliana and compared to individual stresses to reveal additive effects and interactions. A combination of plant metabolomics and root and rhizosphere bacterial metabarcoding were used to unravel effects at the plant holo...

2024-12-16 | MTBLS7365 | MetaboLights

Spatial metabolomics in the seep holobiont Chaetoderma shenloong hosting chemosymbiont using DESI

Symbiosis with chemoautotrophic bacteria has evolved in many animal lineages inhabiting reducing habitats such as hydrothermal vents, allowing these holobionts to thrive in dark biospheres. In certain instances, the symbionts have become intracellular, residing within specialised bacteriocytes. The ...

2026-08-23 | MTBLS15431 | MetaboLights

coral holobiont

coral holobiont Transcriptome

PRJNA559028 | ENA

Trichodesmium holobiont

Trichodesmium holobiont Raw sequence reads

PRJNA435427 | ENA

Holobiont drought study

Holobiont drought study Metagenome

PRJNA885103 | ENA

Coral holobiont amplicons

Coral holobiont amplicons Raw sequence reads