Hope W W - OmicsDI

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Unknown (2675)
Transcriptomics (103)
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Organisms

Homo sapiens (54)
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Heliconius erato etylus x Heliconius himera (2)
Ovis aries (2)
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Homo sapiens (3)
marine metagenome (2)
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Repository

biostudies-arrayexpress (107)
pride (16)
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Instrument Platform

Illumina HiSeq 2000 (2)
Q Exactive (2)
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NextSeq 500 (1)
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Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2016 (16)
2014 (15)
2013 (14)
2011 (14)
2010 (13)
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2012 (5)
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2006 (3)
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2019 (2)
2018 (2)
2005 (1)
2004 (1)
2003 (1)
2002 (1)
2017 (1)

CHEBI ID

CHEBI:131888 (2)
CHEBI:15351 (2)
CHEBI:15414 (2)
CHEBI:15422 (2)
CHEBI:15531 (2)
CHEBI:15551 (2)
CHEBI:15555 (2)
CHEBI:15647 (2)
CHEBI:15996 (2)
CHEBI:16027 (2)
CHEBI:16238 (2)
CHEBI:16335 (2)
CHEBI:16680 (2)
CHEBI:16695 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16750 (2)
CHEBI:16761 (2)
CHEBI:16856 (2)
CHEBI:17050 (2)
CHEBI:17287 (2)
CHEBI:17345 (2)
CHEBI:17361 (2)
CHEBI:17489 (2)
CHEBI:17552 (2)
CHEBI:17562 (2)
CHEBI:17568 (2)
CHEBI:17858 (2)
CHEBI:19138 (2)
CHEBI:34130 (2)

Metabolite Name

1-methylcytosine (1)
11(12)-EET (1)
11,12,15-THET (1)
11,12-DHET (1)
11-HEPE (1)
12(13)-EpOME (1)
12,13-DiHOME (1)
12-HETE (1)
13-HDoHE (1)
13-HODE (1)
13-oxo-ODE (1)
14(15)-EET (1)
14,15-dihydroxyeicosatrienoic acid (1)
14,15-dihydroxyeicosatrienoic acid (14,15-DHET) (1)
15-HETE (1)
15-deoxyPGJ2 (1)
15-oxo-ETE (1)
19-HETE (1)
2-O-methylcytosine (1)
20-HETE (1)
3-methylcytosine (1)
3PG (1)
5(6)-EET (1)
5,6-DHET (1)
5-methylcytosine (1)
5-oxo-ETE (1)
8,9-DHET (1)
8-HETE (1)
8-iso-PGE2 (1)
8-iso-PGF2alpha (1)

First Public Date

2020 (2)
2014 (2)
2013 (2)
2024 (1)
2022 (1)
2017 (1)

Study type

Transcription profiling by array (78)
RNA-seq of coding RNA (10)
Methylation profiling by array (5)
ChIP-seq (4)
Transcription profiling by tiling array (2)
Comparative genomic hybridization by array (2)
ChIP-chip by tiling array (1)
Cell line - High-throughput sequencing (1)
Genotyping by array (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (369)
2023 (315)
2021 (314)
2024 (266)
2025 (258)
2020 (213)
2019 (175)
2018 (133)
2016 (123)
2015 (106)
2017 (105)
2014 (92)
2013 (68)
2012 (54)
2011 (54)
2010 (36)
2026 (35)
2008 (25)
2009 (11)
2007 (8)
2005 (6)
2006 (5)
2000 (3)
2004 (2)
2003 (2)
2002 (2)
2001 (1)
1998 (1)

Lab affiliation

Associate professor, Department of Biomedical laboratory sciences and chemical engineering, Bergen University College, Bergen, Norway. (1)
Centre for Inflammation Research, Queen’s Medical Research Institute, University of Edinburgh, Edinburgh, UK (1)
City of Hope medical centre, Diabetes Institute (1)
Departments of Cancer Genetics and Epigenetics Beckman Research Institute, City of Hope, Duarte, CA 91007, USA (1)
Departments of Pediatrics and Immuno-Oncology, Beckman Research Institute, City of Hope National Medical Center, Duarte CA 91010 (1)
Fungal Physiology, CBS-KNAW Fungal Biodiversity Centre Institute of the Royal Netherlands Academy of Arts and Sciences(KNAW) Fungal Molecular Physiology, Utrecht University The Netherlands (1)
Institute of Molecular Medicine and Cell Research, University of Freiburg, Germany (1)
Institute of Pharmaceutical Chemistry, Goethe University, Max-von-Laue-Str. 9, 60438 Frankfurt am Main, Germany Structural Genomics Consortium (SGC), Buchmann Institute for Life Sciences, Max-von-Laue-Str. 15, 60438 Frankfurt am Main, Germany (1)
Key Laboratory of Neuroregeneration, Nantong University, Nantong, China. (1)
Laboratory of Pharmaceutical Biotechnology/ProGenTomics, Ghent University, Ottergemsesteenweg 460, 9000 Ghent, Belgium (1)
Laboratory of Toxinology, Oswaldo Cruz Institute, Fiocruz, Rio de Janeiro, RJ, Brazil (1)
School of Biochemistry, University of Bristol (1)
School of Clinical Medicine, Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region, China, 750004. Ningxia Human Stem Cell Institute, General Hospital of Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region, China, 750004. (1)
The Second Affiliated Hospital of Air Force Medical University (1)
University of California Riverside (1)
University of Vienna (1)

Tags

xref:PubMed:33076907 (2)
xref:PubMed:21900967 (2)
xref:PubMed:35476525 (1)
xref:PubMed:21705711 (1)
xref:PubMed:17456796 (1)

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Tiling microarray expression analysis of Heliconius butterfly pupal forewing sections across the genomic interval controlling red color pattern

We investigated gene expression levels in Heliconius erato butterflies with divergent wing patterns across a 656KB genomic interval linked to the red color pattern wing polymorphism. This included comparison of expression between two H. erato color pattern populations (H. e. petiverana and a H.e. et...

ORGANISM(S): Heliconius erato etylus x Heliconius himera

2011-12-02 | E-GEOD-30221 | biostudies-arrayexpress

Antimicrobial mechanism analysis of an oil-in-water micro-emulsion by DNA microarray-mediated transcriptional profiling of Escherichia coli

The DNA microarray was employed in this study to investigate the gene expression profiles of Escherichia coli treated by an oil-in-water (o/w) microemulsion, in order to better understand the antimicrobial mechanism of the microemulsion as a promising food-grade antimicrobial system. 5,440 open read...

ORGANISM(S): Escherichia coli

2014-01-28 | E-GEOD-50556 | biostudies-arrayexpress

PFOS and PFHxS decrease lipoprotein production

The effect of perfluoroalkyl sulfonates on lipoprotein metabolism was investigated in APOE*3-Leiden.CETP mice with a humanized lipoprotein profile. Perfluorohexane sulfonate and perfluorooctane sulfonate markedly reduced both plasma TG and TC by decreasing nonHDL-C and HDL-C accompanied by a reducti...

ORGANISM(S): Mus musculus

2011-01-01 | E-GEOD-22940 | biostudies-arrayexpress

The tissue is the issue: Improved methylome analysis from paraffin-embedded tissues by application of the HOPE-technique

Genome wide DNA methylation profiling of DNA samples obtained from normal lung tissue and lung carcinoma, either fixed by formalin (FFPE), HOPE (paraffin embedded) or cryo-preserved. Illumina's HumanMethylation450 BeadChip was used to obtain DNA methylation profiles across approximately 450.000 CpG...

ORGANISM(S): Homo sapiens

2016-08-22 | E-GEOD-51077 | biostudies-arrayexpress

Where Hope Thrives: Demographic Variation in Hope across 22 Countries.

Not available

S-EPMC12698755 | biostudies-literature

COHCAP: City of Hope CpG Island Analysis Pipeline

COHCAP (City of Hope CpG Island Analysis Pipeline) is an algorithm to analyze single-nucleotide resolution DNA methylation data. It provides QC metrics, differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, and visualization of methy...

ORGANISM(S): Homo sapiens

2013-06-08 | E-GEOD-42310 | biostudies-arrayexpress

Transcriptome Microarray Gene Expression Analysis of Heliconius butterfly forewing and hindwing tissues across pupal development reveals genes underlying wing pattern variation

Heliconius butterfly wing pattern diversity offers a unique opportunity to investigate how natural genetic variation can drive the evolution of complex adaptive phenotypes. Here we took a large-scale transcriptomic approach to identify the network of genes involved in Heliconius wing pattern develop...

ORGANISM(S): Heliconius erato etylus x Heliconius himera

2012-06-30 | E-GEOD-38084 | biostudies-arrayexpress

A Digital Program (Hope) for People Living With Cancer During the COVID-19 Pandemic: Protocol for a Feasibility Randomized Controlled Trial.

Not available

S-EPMC7721632 | biostudies-literature

Synergistic antifungal interactions of amphotericin B with 4-(5-methyl-1,3,4-thiadiazole-2-yl) benzene-1,3-diol.

Not available

S-EPMC6737028 | biostudies-literature

Cryptic exon detection and transcriptomic changes revealed in single-nuclei RNA sequencing of C9ORF72 patients spanning the ALS-FTD spectrum.

Not available

S-EPMC10412668 | biostudies-literature