Hopkins S S - OmicsDI

Show results for

Unknown (22862)
Proteomics (206)
Genomics (127)
Transcriptomics (89)
Genomic (50)
Metabolomics (14)
Models (7)
Other (3)
Multiomics (1)

Organisms

Homo sapiens (220)
Mus musculus (53)
Rattus norvegicus (11)
Escherichia coli (9)
Saccharomyces cerevisiae (7)
Drosophila melanogaster (6)
Ovis aries (5)
Bos taurus (3)
Severe acute respiratory syndrome coronavirus 2 (3)
Plasmodium falciparum (2)
Danio rerio (2)
Oryctolagus cuniculus (2)
Euarchontoglires (1)
Callithrix sp. (1)
Musa acuminata (1)
Ectocarpus siliculosus (1)
Lotus japonicus (1)
Canis lupus familiaris (1)
Fusarium sinicum (1)
Homo (1)
Anopheles stephensi (1)
Arabidopsis thaliana (1)
Bacteria (1)
Caenorhabditis elegans (1)
Cavia porcellus (1)
Cricetulus barabensis (1)
Cricetulus griseus (1)
Entamoeba histolytica HM-1:IMSS (1)
Haloferax volcanii DS2 (1)
Human immunodeficiency virus 1 (1)

Organisms

Homo sapiens (25)
Mus musculus (12)
human nasopharyngeal metagenome (2)
Streptococcus pyogenes (2)
Saccharomyces cerevisiae (2)
Anopheles gambiae (1)
Saccharomyces cerevisiae S288C (1)
Schizosaccharomyces pombe (1)
Setaria viridis (1)
synthetic construct (1)
Staphylococcus aureus (1)
Rattus norvegicus (1)
Drosophila melanogaster (1)

Repository

pride (169)
biostudies-arrayexpress (94)
EGA (63)
ENA (61)
dbGaP (50)
MassIVE (35)
BioModels (7)
MetabolomicsWorkbench (7)
MetaboLights (6)
GPMDB (3)
GNPS (1)
PanoramaPublic (1)

Tissue

Cell culture (36)
Epithelial cell (14)
Brain (12)
Permanent cell line cell (7)
Blood plasma (6)
Kidney (6)
Liver (5)
Primary cell (5)
Blood platelet (4)
Blood serum (4)
Cerebrospinal fluid (4)
Colon (4)
Fibroblast (4)
Heart (4)
Hepatocyte (4)
Lung (4)
T cell (4)
Cultured cells (3)
Accessory sex gland (3)
Breast (3)
Cardiocyte (3)
Blood (2)
Breast cancer cell (2)
Breast cancer cell line (2)
Corneal endothelial cell (2)
Embryonic stem cell (2)
Endothelial cell of umbilical vein (2)
Fetal cardiomyocyte (2)
Feces (1)
Yeast cells (1)

Disease

Disease free (11)
Breast cancer (8)
Cardiovascular system disease (4)
Prostate adenocarcinoma (4)
Not Available (3)
Colon cancer (3)
Parkinson's disease (3)
Colorectal cancer (2)
Acute leukemia (2)
Head and neck squamous cell carcinoma (2)
Human immunodeficiency virus infectious disease (2)
Non-small cell lung carcinoma (2)
Renal cell carcinoma (2)
Measles virus infected (1)
Multibacillary (1)
Myelogenous leukaemia (1)
NF1 atypical neurofibroma (1)
Colon carcinoma (1)
Colorectal carcinoma (1)
Limited scleroderma (1)
Acute promyelocytic leukemia (1)
COPD (1)
Cancer (1)
Age related macular degeneration (1)
Alzheimer's disease (1)
Amyotrophic lateral sclerosis (1)
Autism spectrum disorder (1)
Brain cancer (1)
Breast ductal carcinoma (1)
Cancer (1)

Technology Type

Mass Spectrometry (176)
Shotgun proteomics (110)
Bottom-up proteomics (28)
Affinity purification coupled with mass spectrometry proteomics (14)
Data-dependent acquisition (12)
Chemical cross-linking coupled with mass spectrometry proteomics (9)
ESI (7)
Data-independent acquisition (6)
Mass spectrometry (5)
Gel-based experiment (4)
Affinity proteomics (3)
Olink affinity proteomics (3)
Top-down proteomics (3)
SRM/MRM (2)
SWATH MS (2)
Affymetrix OncoScan FFPE Express (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Glycoproteomics (1)

Instrument Platform

Q Exactive (12)
TimsTOF fleX (9)
Orbitrap Fusion Lumos (8)
LTQ Orbitrap Velos (6)
Instrument (3)
LTQ Orbitrap Elite (3)
Illumina Genome Analyzer II (2)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
G2505. Agilent’s Scan Control software v. A.7.01 and Feature Extraction. (1)
GenePix 4000B [Axon Instruments] (1)
GenePix 4000B (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion ETD (1)
Thermo Scientific Orbitrap Velos 2 (1)
TimsTOF SCP (1)
TripleTOF 6600 (1)
ZenoTOF 7600 (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
LTQ (1)

Publication Date

2022 (30)
2016 (24)
2024 (21)
2026 (21)
2013 (20)
2021 (19)
2018 (19)
2015 (19)
2025 (17)
2019 (15)
2017 (14)
2011 (13)
2009 (13)
2023 (12)
2014 (12)
2020 (11)
2010 (10)
2012 (7)
2005 (5)
2008 (4)
2007 (4)
2006 (1)
2004 (1)

CHEBI ID

CHEBI:15428 (5)
CHEBI:16610 (5)
CHEBI:16958 (5)
CHEBI:17822 (5)
CHEBI:133144 (4)
CHEBI:16238 (4)
CHEBI:16449 (4)
CHEBI:16750 (4)
CHEBI:16919 (4)
CHEBI:17050 (4)
CHEBI:17126 (4)
CHEBI:17268 (4)
CHEBI:17562 (4)
CHEBI:18107 (4)
CHEBI:18132 (4)
CHEBI:22653 (4)
CHEBI:6650 (4)
CHEBI:73004 (4)
CHEBI:82966 (4)
CHEBI:116314 (3)
CHEBI:133028 (3)
CHEBI:133077 (3)
CHEBI:15379 (1)
CHEBI:16480 (1)
CHEBI:18211 (1)
CHEBI:29016 (1)
CHEBI:29033 (1)
CHEBI:29034 (1)
CHEBI:38068 (1)
CHEBI:47830 (1)

Metabolite Name

(R)-3-hydroxybutyrylcarnitine (3)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (3)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (3)
1-(1-enyl-stearoyl)-GPE (P-18:0) (3)
1-arachidonoyl-GPI (20:4) (3)
1-myristoyl-2-palmitoyl-GPC (14:0/16:0) (3)
1-palmitoyl-2-docosahexaenoyl-GPE (16:0/22:6) (3)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (3)
1-palmitoyl-2-palmitoleoyl-GPC (16:0/16:1) (3)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (3)
1-palmitoyl-GPE (16:0) (3)
1-stearoyl-2-docosahexaenoyl-GPE (18:0/22:6) (3)
1-stearoyl-2-oleoyl-GPE (18:0/18:1) (3)
2'-deoxycytidine (3)
2'-deoxyuridine (3)
2-hydroxyglutarate (3)
2-palmitoleoyl-GPC (16:1) (3)
2-stearoyl-GPE (18:0) (3)
3-phosphoglycerate (3)
AMP (3)
Acetylphosphate (3)
Alanine (3)
Alpha-ketoglutarate (3)
Arginine (3)
CDP-choline (3)
CDP-ethanolamine (3)
CMP (3)
CoA-glutathione (3)
FAD (3)
NAD+ (3)

First Public Date

2020 (12)
2025 (11)
2024 (10)
2014 (7)
2021 (5)
2022 (4)
2018 (3)
2026 (2)
2019 (2)
2016 (2)
2015 (2)
2017 (1)

Modelling Approach

Ordinary differential equation model (6)
Computational model (1)

Lab affiliation

Johns Hopkins University (8)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205 USA (8)
The Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287 USA (8)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 USA (6)
Johns Hopkins School of Medicine (5)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (4)
Johns Hopkins University School of Medicine (4)
Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA. (3)
Johns Hopkins University, Chemistry Department, Fried Lab, USA (3)
Institute of Genetic Medicine, Johns Hopkins University School of Medicine (2)
Professor, Molecular Medicine Scientific Director UF Scripps Biomedical Research University of Florida (2)
School of Nursing and School of Medicine, Department of Neurology, Johns Hopkins University, Baltimore, MD, United States (2)
Wilmer Eye Institute, Smith Building, M015, 400 N. Broadway, Baltimore, MD 21287 (2)
1Department of Ophthalmology, Johns Hopkins University School of Medicine, Baltimore, MD (1)
1Department of Ophthalmology, Stem Cell Ocular Regenerative Medicine Center, Wilmer Eye Institute, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
1Department of Pathology, Johns Hopkins University, Baltimore, Maryland 21287, USA (1)
9McKusick-Nathans Institute of Genetic Medicine, 10Departments of Biological Chemistry, and 11Pathology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
Ahmet Hoke M.D., Ph.D. FRCPC Professor, Neurology and Neuroscience Director, Neuromuscular Division Director, Merkin Peripheral Neuropathy and Nerve Regeneration Center Editor-in-Chief, Experimental Neurology Johns Hopkins School of Medicine 855 N. Wolfe St., Rangos 248 Baltimore, MD, 21205 USA (1)
Aikaterini Kontrogianni-Konstantopoulos, Ph.D. Professor of Biochemistry and Molecular Biology Director, Interdisciplinary Training Program in Muscle Biology Marlene and Stewart Greenebaum Comprehensive Cancer Center University of Maryland School of Medicine 108 N. Greene Street, 215A Baltimore, MD 21201 (1)
Anesthesiology and Critical Care Medicine, Department of Pediatric Critical Care Medicine, Johns Hopkins Medicine (1)
Assistant Professor of Neurology Institute for Cell Engineering Johns Hopkins University School of Medicine (1)
Assistant professor, Biochemistry and Molecular Biology, Johns Hopkin Bloomberg Schools of Public Health, USA. (1)
Associate Professor of Neurology Institute for Cell Engineering Johns Hopkins University School of Medicine (1)
Associate Professor, Department of Chemistry Associate Professor, Thomas C. Jenkins Department of Biophysics Associate Professor, Department of Biology (1)
Associate Prosfessor, Johns Hopkins University, Department of Pathology Baltimore USA (1)
BioBix, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, Ghent, Belgium (1)
Cedars-Sinai Medical Center (1)
Center for Biologics Evaluation and Research (CBER), U.S. Food and Drug Administration (FDA) (1)
Chemical & Biomolecular Engineering, Johns Hopkins University (1)
Deparment of Chemistry, Syracuse University (1)

IsPrivate

False (7)

Submitter Keywords

Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)

Classification

bacteria (3)

Modification

2x(15)N labeled L-lysine (4)
4x(15)N labeled L-arginine (4)
Not available (3)
4 (2)

Study type

Transcription profiling by array (56)
Comparative genomic hybridization by array (9)
RNA-seq of coding RNA (9)
Methylation profiling by array (5)
Transcription profiling by SAGE (2)
Transcription profiling by RT-PCR (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
Animal - One-color microarray (1)
Cell line - One-color microarray (1)
ChIP-chip by array (1)
MicroRNA profiling by high throughput sequencing (1)
ChIP-seq (1)
Proteomic profiling by array (1)

Release Date

2022 (2439)
2021 (2362)
2023 (2187)
2025 (2165)
2024 (2026)
2020 (1868)
2019 (1571)
2018 (1368)
2017 (1250)
2016 (1081)
2015 (962)
2014 (811)
2013 (529)
2011 (460)
2012 (459)
2026 (293)
2010 (287)
2009 (264)
2008 (171)
2007 (104)
2006 (73)
2005 (52)
2004 (45)
2003 (31)
2002 (23)
2001 (22)
2000 (19)
1999 (16)
1998 (10)
1997 (7)

Previous page
1 / 2336
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 2336
Next page

Sort by:

Relevance

Page size

Mitochondrial S-NO modified proteins

Biotin switch of in vitro S-NO modified rat cardiac mitochondria

ORGANISM(S): Rattus norvegicus (Rat)

2011-02-21 | PRD000825 | Pride

Selective fluorescent labeling of S-nitrosothiols (S-FLOS): a novel method for studying S-nitrosation.

Not available

S-EPMC3705760 | biostudies-literature

Human LC-MS (Ubiquitin Ligase ITCH Controls SARS-CoV-2 Virion Assembly and Egress)

To identify host proteins that interact with SARS-CoV2 VLP components, we performed proteomic analysis of the co-immunoprecipitates pulled down by the structural proteins co-expressed in HEK293 cells (S/E/M, E or M).

ORGANISM(S): Homo sapiens (Human)

2026-02-23 | PXD049221 | Pride

Sars-cov-2 s/e/m

Mononuclear, Nonheme, High-Spin {FeNO}^7/8 Complexes Supported by a Sterically Encumbered N₄S-Thioether Ligand.

Not available

S-EPMC6715289 | biostudies-literature

Glutathione S-transferases promote proinflammatory astrocyte-microglia communication during brain inflammation.

Not available

S-EPMC6637164 | biostudies-literature

Atopic dermatitis-like epicutaneous infection with S. aureus in WT and eosinophil KO mice

PRJNA892640 | ENA

A Reactive, Photogenerated High-Spin (S = 2) Fe^IV(O) Complex via O₂ Activation.

Not available

S-EPMC9109941 | biostudies-literature

CTH exacerbates Helicobacter pylori immunopathogenesis by promoting macrophage metabolic remodeling and activation

Macrophages play a crucial role in the inflammatory response to the human stomach pathogen Helicobacter pylori, which infects half of the world's population and causes gastric cancer. Recent studies have highlighted the importance of macrophage immunometabolism in their activation state and function...

2022-06-14 | MTBLS2851 | MetaboLights

S. cerevisiae genome sequencing

genome sequencing of S. cerevisiae mutagenized strains.

PRJEB9094 | ENA

Using S-adenosyl-L-homocysteine capture compounds to characterize S-adenosyl-L-methionine and S-adenosyl-L-homocysteine binding proteins.

Not available

S-EPMC4315328 | biostudies-literature

Previous page
1 / 2336
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 2336
Next page

Sort by:

Relevance

Page size

23359 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Lab affiliation

Tags

IsPrivate

Submitter Keywords

Classification

Modification

Study type

Release Date

OmicsDI is part of the ELIXIR infrastructure

Tweets