Howard B B - OmicsDI

Show results for

Unknown (7924)
Transcriptomics (222)
Proteomics (66)
Genomics (46)
Genomic (16)
Metabolomics (5)
Models (4)
Multiomics (2)

Organisms

Homo sapiens (152)
Mus musculus (73)
Rattus norvegicus (19)
Drosophila melanogaster (15)
Saccharomyces cerevisiae (9)
Arabidopsis thaliana (8)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (4)
Xenopus laevis (4)
Legionella pneumophila (3)
Bacteria (2)
Phytophthora infestans (2)
Taeniopygia guttata (2)
Macaca mulatta (2)
Rattus rattus (2)
Mycobacterium tuberculosis (2)
Glycine max (2)
Clostridioides difficile (1)
cellular organisms (1)
Methanosarcina acetivorans (1)
Ruegeria pomeroyi (1)
Dunaliella viridis (1)
Colletotrichum higginsianum (1)
Pseudomonas putida F1 (1)
Vitis sp. cv. 'Norton' (1)
Drosophila (1)
Spodoptera frugiperda (1)
Yersinia pseudotuberculosis (1)
Toxoplasma gondii (1)
Bos indicus (1)
synthetic construct (1)

Organisms

Homo sapiens (6)
Mus musculus musculus (1)
Arabidopsis thaliana (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (237)
pride (60)
EGA (22)
dbGaP (16)
ENA (9)
MetaboLights (5)
MassIVE (4)
BioModels (2)
Cell Collective (1)
FAIRDOMHub (1)
PanoramaPublic (1)
PeptideAtlas (1)

Tissue

Cell culture (13)
Liver (7)
Hepatocyte (5)
Blood plasma (4)
Epithelial cell (4)
Brain (3)
Kidney (3)
B cell (2)
Blood (2)
Blood serum (2)
Early embryonic cell (2)
Embryonic stem cell (2)
Erythrocyte (2)
Fibroblast (2)
HeLa cell (2)
Heart (2)
Macrophage (2)
Permanent cell line cell (2)
Skin (2)
Small intestine mucosa (2)
Brain (1)
Blood cell (1)
Brown adipocyte (1)
Brown adipose tissue (1)
Cell suspension culture (1)
Embryonic fibroblast (1)
Leaf (1)
Lung (1)
Macrophage cell line (1)
Mammary gland (1)

Disease

Cardiovascular system disease (2)
Leukemia (2)
Clostridium difficile colitis (1)
Normal transgenic (transgenic betaARKct) (1)
HIV encephalitis (1)
Primary tumor (1)
Normal (1)
Acute leukemia (1)
Biliary atresia (1)
Breast cancer (1)
Colon cancer (1)
Inflammation (1)
Influenza (1)
Lung cancer (1)
Malignant neoplasm of ovary (1)
Rhabdoid cancer (1)
Skin cancer (1)

Technology Type

Mass Spectrometry (60)
Shotgun proteomics (35)
Affinity purification coupled with mass spectrometry proteomics (12)
Bottom-up proteomics (8)
Gel-based experiment (7)
Data-dependent acquisition (6)
Mass spectrometry (5)
Data-independent acquisition (4)
Top-down proteomics (4)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
SRM/MRM (3)
SWATH MS (3)
Illumina HiSeq 2000, Illumina_2.5M (1)
Illumina HiSeq 2000, unknown (1)

Instrument Platform

Illumina HiSeq 4000 (4)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (3)
NextSeq 500 (2)
Q Exactive (2)
QE-HF (2)
Lightwave (1)
Variable Atmosphere Incubator (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
Ion Torrent Proton (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
AB 5500xl Genetic Analyzer (1)
Flow injection analysis MS - (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)
LTQ Orbitrap (1)

Publication Date

2013 (36)
2015 (27)
2011 (27)
2010 (26)
2012 (23)
2014 (22)
2021 (18)
2008 (18)
2018 (17)
2006 (13)
2007 (12)
2020 (11)
2016 (10)
2026 (10)
2024 (9)
2009 (9)
2022 (6)
2019 (5)
2025 (5)
2005 (4)
2017 (2)
2023 (1)

UNIPROT ID/AC

A0A024R8H9 (1)
A0A024RC46 (1)
A0A087WTX5 (1)
A0A087WVW2 (1)
A0A087WVZ5 (1)
A0A087WWA5 (1)
A0A087WWK8 (1)
A0A087WXI0 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1S3 (1)
A0A087X1V9 (1)
A0A0A0MR66 (1)
A0A0A0MS07 (1)
A0A0A0MS51 (1)
A0A0A0MSA7 (1)
A0A0C4DG89 (1)
A0A0C4DGT3 (1)
A0AVT1 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A0M8Q6 (1)
A0MZ66 (1)
A0PJX4 (1)
A1L0T0 (1)
A1L390 (1)
A2A3K4 (1)
A2BFH1 (1)
A2NUT2 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:25017 (2)
CHEBI:28300 (2)
CHEBI:29016 (2)
CHEBI:6650 (2)
CHEBI:78320 (2)
CHEBI:33699 (1)
CHEBI:36080 (1)
CHEBI:134428 (1)
CHEBI:14321 (1)
CHEBI:15345 (1)
CHEBI:15351 (1)
CHEBI:15422 (1)
CHEBI:15467 (1)
CHEBI:15531 (1)
CHEBI:155821 (1)
CHEBI:15611 (1)
CHEBI:15741 (1)
CHEBI:157611 (1)
CHEBI:157612 (1)
CHEBI:157613 (1)
CHEBI:157614 (1)
CHEBI:157615 (1)
CHEBI:157616 (1)
CHEBI:157617 (1)
CHEBI:15843 (1)
CHEBI:15846 (1)
CHEBI:15891 (1)
CHEBI:15978 (1)
CHEBI:15996 (1)
CHEBI:16027 (1)

Metabolite Name

Aspartate (2)
Glutamate (2)
Lactate (2)
Leucine (2)
Malate (2)
Succinate (2)
1-methylguanosine (1)
2,3-Dihydroxybenzoic acid (1)
2-phosphoglycolate (1)
3-Methylxanthine (1)
ADP (1)
AMP (1)
ATP (1)
Acetoacetyl-CoA (1)
Acetyl-CoA (1)
Adenosine (1)
Alanine (1)
Arginine (1)
Aspartame (1)
CE 18:0 (1)
Cer 34:0;2O (1)
Cer 34:1;2O|Cer 18:1;2O/16:0 (1)
Cer 36:1;2O (1)
Cer 38:0;3O (1)
Cer 40:0;2O|Cer 18:0;2O/22:0 (1)
Cer 40:1;2O|Cer 18:1;2O/22:0 (1)
Cer 40:2;2O|Cer 18:1;2O/22:1 (1)
Cer 42:0;2O|Cer 18:0;2O/24:0 (1)
Cer 42:0;3O|Cer 18:0;2O/24:0;O (1)
Cer 42:1;2O|Cer 18:1;2O/24:0 (1)

First Public Date

2025 (2)
2022 (2)
2014 (2)
2021 (1)
2015 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Centre for Applied Pharmacokinetic Research, School of Health Sciences, The University of Manchester, UK (7)
Department of Molecular Biology, Princeton University (2)
Howard Hughes Medical Institute Beth Israel Deaconess Medical Center Harvard Medical School (2)
Laboratory of Chemical Biology and Microbial Pathogenesis, The Rockefeller University, New York, NY 10065, USA (2)
Laboratory of chemical biology and microbial pathogenesis, The Rockefeller University, New York, USA (2)
1.Division of Infectious Diseases, Brigham and Women's Hospital, Boston, MA, USA 2.Department of Microbiology, Harvard Medical School, Boston, MA, USA 3.Howard Hughes Medical Institute, Boston, MA, USA (1)
1Division of Hematology/Oncology, Boston Children’s Hospital and Department of Pediatric Oncology, Dana-Farber Cancer Institute (DFCI), Harvard Stem Cell Institute, Harvard Medical School, Howard Hughes Medical Institute, Boston, MA 02115, USA (1)
Centre for Applied Pharmacokinetic Research (CAPKR), University of Manchester (1)
Centre for Applied Pharmacokinetic Research, School of Health Sciences, The University of Manchester (1)
Centre for Applied Pharmacokinetic Research, School of Health Sciences, The University of Manchester. (1)
Chief Scientific Officer, BioFrontiers Institute Distinguished Professor, Department of Molecular, Cellular, and Developmental Biology Professor, Howard Hughes Medical Institute (1)
Clinical Diagnostic Laboratory Department of Clinical Veterinary Medicine Vetsuisse Faculty University of Bern Bern Switzerland (1)
David Geffen School of Medicine, UCLA, USA BD2K Center of Excellence for Big Data Computing at UCLA, UCLA, USA (1)
Department of Cellular and Molecular Pharmamcology, UCSF (1)
Department of Chemistry, Stanford University, Stanford, CA 94305; Sarafan ChEM-H, Stanford University, Stanford, CA 94305; Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305 (1)
Department of Chemistry, Stanford University, Stanford, California, USA Howard Hughes Medical Institute, Stanford, California, USA (1)
Department of Dermatology, Stanford University (1)
Department of Immunology & Microbiology, Scripps Research, USA (1)
Department of Immunology and Microbiology, Scripps Research, USA (1)
Department of Medicine, Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA (1)
Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA 94720 USA California Institute for Quantitative Biosciences, University of California at Berkeley, Berkeley, CA 94720 Howard Hughes Medical Institute, University of California at Berkeley, Berkeley, CA 94720 USA (1)
Department of Neuroscience, School of Medicine, University of Florida (1)
Department of Pathology, Microbiology, and Immunology Vanderbilt University School of Medicine Nashville, TN 37232 USA (1)
Department of Pediatric Oncology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA 02215, USA Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA (1)
Department of Plant Pathology, University of Georgia, Athens, Georgia, USA (1)
Division of Molecular Pathology Molecular and Systems Oncology Team The Institute of Cancer Research 237 Fulham Road, SW3 6JB London United Kingdom (1)
Emory Univerity (1)
Experimental Systems Immunology, Max Planck Institute of Biochemistry, Martinsried, Germany. (1)
Functional Proteomics, ICR (1)
Howard Hughes Medical Institute Department of Molecular Biology and Genetics, Johns Hopkins Medical Institute 725 N. Wolfe Street 714 PCTB Baltimore, MD 21205 410-614-4928 (1)

IsPrivate

False (2)

Modification

1x(15)N labeled L-leucine (1)

Study type

Transcription profiling by array (155)
RNA-seq of coding RNA (26)
ChIP-seq (13)
Other (10)
Unknown experiment type (8)
Methylation profiling by array (8)
Comparative genomic hybridization by array (5)
ChIP-chip by tiling array (2)
Genotyping by array (2)
RNA-seq of non coding RNA (2)
Transcription profiling by tiling array (1)
Transcription profiling by RT-PCR (1)
ATAC-seq (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (574)
2015 (563)
2022 (543)
2014 (541)
2020 (525)
2018 (498)
2019 (488)
2016 (482)
2023 (440)
2017 (433)
2025 (416)
2024 (380)
2013 (368)
2011 (349)
2012 (325)
2010 (309)
2009 (208)
2008 (193)
2007 (103)
2006 (81)
2005 (66)
2004 (49)
2026 (48)
2002 (41)
2003 (34)
2001 (30)
2000 (22)
1999 (20)
1998 (18)
1997 (11)

Previous page
1 / 829
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 829
Next page

Sort by:

Relevance

Page size

RNA-seq of splenic follicular B cells from wild-type and IKZF1 L132P mutant mice

Comparing the effect of the L132P variant in ZF1 of IKZF1 on the gene expression in sorted follicular B cells.

ORGANISM(S): Mus musculus

2021-01-29 | E-MTAB-9975 | biostudies-arrayexpress

Tissue specific demethylation is required for proper B-cell differentiation and function

Many studies have demonstrated that somatic cell differentiation during development is accompanied by extensive demethylation of specific sites relevant to each cell type. Although the mechanism of this process has not yet been elucidated, it is likely to involve the conversion of 5mC to 5hmC by Te...

ORGANISM(S): Mus musculus

2016-04-06 | E-GEOD-70538 | biostudies-arrayexpress

B cell-specific XIST complex enforces X-inactivation and restrains atypical B cells.

Not available

S-EPMC9196326 | biostudies-literature

Study of Addiction: Genetics and Environment (SAGE)

This study is part of the Gene Environment Association Studies initiative (GENEVA) funded by the National Human Genome Research Institute. The overarching goal is to identify novel genetic factors that contribute to addiction through a large-scale genome-wide association study of DSM-IV alcoh...

phs000092 | dbGaP

B-cell non-Hodgkin lymphoma: Selective vulnerability to PIKFYVE inhibition.

Not available

S-EPMC5486370 | biostudies-literature

B lymphocytes undergo TLR2-dependent apoptosis upon Shigella infection.

Not available

S-EPMC4042640 | biostudies-literature

Visualization of splenic marginal zone B-cell shuttling and follicular B-cell egress.

Not available

S-EPMC3561487 | biostudies-literature

miR-150, a microRNA expressed in mature B and T cells, blocks early B cell development when expressed prematurely.

Not available