Huang H H - OmicsDI

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Unknown (51654)
Proteomics (1191)
Transcriptomics (681)
Genomics (192)
Metabolomics (131)
Models (5)
Multiomics (3)
Genomic (1)
Other (1)

Organisms

Homo sapiens (580)
Mus musculus (251)
Arabidopsis thaliana (28)
Rattus norvegicus (25)
Streptomyces coelicolor (21)
Oryza sativa (17)
Drosophila melanogaster (13)
Saccharomyces cerevisiae (10)
Oryza sativa Japonica Group (8)
Danio rerio (8)
Staphylococcus aureus (7)
Bos taurus (6)
Escherichia coli (5)
Streptomyces coelicolor A3(2) (4)
Caenorhabditis elegans (3)
Gallus gallus (3)
Candida albicans (3)
Sus scrofa (3)
Eukaryota (2)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (2)
Harpegnathos saltator (2)
Bombyx mori (2)
Zea mays (2)
Spalax carmeli (1)
Pseudomonas phage PaP1 (1)
Trametes versicolor (1)
Coccinella septempunctata (1)
Brassica rapa subsp. oleifera (1)
Candida tropicalis MYA-3404 (1)
Aspergillus terreus (1)

Organisms

Homo sapiens (8)
Oryza sativa (5)
Mus musculus (4)
Agrobacterium fabrum str. C58 (1)
Trichoderma reesei (1)

Repository

pride (862)
biostudies-arrayexpress (738)
iProX (262)
MetaboLights (131)
EGA (112)
ENA (24)
MassIVE (23)
PeptideAtlas (20)
PAXDB (15)
BioModels (4)
PanoramaPublic (4)
geo (3)
jPOST (3)
Cell Collective (1)
dbGaP (1)
GPMDB (1)

Tissue

Cell culture (209)
Epithelial cell (70)
Brain (40)
Liver (37)
Whole body (33)
Blood plasma (27)
Kidney (23)
Leaf (23)
Lung (23)
Plant cell (22)
Permanent cell line cell (21)
Blood (16)
Blood cell (15)
Fibroblast (15)
Testis (15)
Blood serum (14)
Heart (14)
Hepatocyte (14)
T cell (14)
Cell suspension culture (12)
HeLa cell (12)
Spleen (12)
B cell (10)
Embryonic stem cell (10)
Stem cell (10)
Colon (9)
Embryo (8)
Skin (8)
Bone marrow (7)
Brain (2)

Disease

Disease free (22)
Breast cancer (17)
Colon cancer (16)
Prostate adenocarcinoma (10)
Acute leukemia (7)
Melanoma (6)
Cardiovascular system disease (5)
Cervix carcinoma (5)
Glioblastoma (5)
Lung cancer (5)
Brain cancer (4)
Malignant neoplasm of ovary (4)
Severe acute respiratory syndrome (4)
Wounds and Injuries (4)
Alzheimer's disease (3)
Influenza (3)
Liver cancer (3)
Mixed disorder as reaction to stress (3)
Non-alcoholic steatohepatitis (3)
Non-small cell lung carcinoma (3)
Pancreatic ductal adenocarcinoma (3)
Stomach cancer (3)
Normal (2)
Metastatic colorectal cancer (1)
Extranodal NK/T-Cell Lymphoma derived cell line (1)
Breast Carcinoma (1)
Colorectal cancer (1)
Nodal peripheral T-cell Lymphoma (1)
Multiple myeloma (1)
Not Available (1)

Technology Type

Mass Spectrometry (862)
Shotgun proteomics (429)
Bottom-up proteomics (137)
Mass spectrometry (103)
Affinity purification coupled with mass spectrometry proteomics (101)
Data-dependent acquisition (78)
Gel-based experiment (47)
Data-independent acquisition (33)
Top-down proteomics (31)
Chemical cross-linking coupled with mass spectrometry proteomics (25)
SWATH MS (20)
Mass spectrometry assay (19)
All-ion fragmentation (12)
SRM/MRM (11)
NMR spectroscopy (10)
Affinity proteomics (10)
Proteogenomics (10)
Mass spectrometry imaging (6)
Immunopeptidomics (5)
DiaPASEF (4)
Illumina HiSeq 2000, ILLUMINA (2)
Illumina HiSeq 2000 (ILLUMINA), Illumina HiSeq 1500 (ILLUMINA) (1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2500 (ILLUMINA), Illumina HiSeq 4000 (ILLUMINA) (1)
NextSeq 550, ILLUMINA (1)
Affymetrix OncoScan FFPE Express (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Aperio (1)
Illumina OmniQuad 2.5 - CNVpartition (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)

Instrument Platform

Illumina NovaSeq 6000 (14)
Illumina HiSeq 2000 (8)
Illumina HiSeq 2500 (6)
Illumina HiSeq 4000 (6)
Q Exactive (6)
LTQ Orbitrap Velos (6)
LTQ Orbitrap Elite (5)
Orbitrap Fusion Lumos (4)
LTQ (3)
Illumina HiSeq 1500 (2)
NextSeq 550 (2)
LTQ Orbitrap (2)
Hamamatsu Nanozoomer S60 (1)
Single cells were captured using the 10x Genomics Chromium Controller. (1)
10X Genomics Chromium (1)
Affymetrix Array scanner (1)
Affymetrix hybridization station (1)
Illumina Genome Analyzer IIx (1)
Variable Atmosphere Incubator (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq X (1)
NextSeq 500 (1)
Instrument (1)
Agilent 6495B QQQ mass spectrometer (1)
Orbitrap Eclipse (1)
Orbitrap Fusion ETD (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
Q Exactive Plus (1)
SolariX (1)

Publication Date

2025 (198)
2022 (188)
2024 (143)
2023 (137)
2021 (128)
2026 (128)
2014 (126)
2013 (119)
2015 (110)
2012 (101)
2011 (92)
2020 (88)
2010 (72)
2016 (70)
2019 (55)
2018 (54)
2017 (42)
2008 (34)
2009 (22)
2007 (12)
2005 (10)
2006 (1)
2003 (1)

UNIPROT ID/AC

143BA_DANRE (15)
143BB_DANRE (15)
143G1_DANRE (15)
7955.ENSDARP00000023429 (15)
7955.ENSDARP00000067603 (15)
7955.ENSDARP00000067945 (15)
7955.ENSDARP00000082327 (15)
7955.ENSDARP00000093747 (15)
7955.ENSDARP00000093780 (15)
7955.ENSDARP00000093791 (15)
7955.ENSDARP00000093801 (15)
7955.ENSDARP00000096295 (15)
7955.ENSDARP00000096352 (15)
7955.ENSDARP00000098342 (15)
7955.ENSDARP00000098726 (15)
7955.ENSDARP00000099550 (15)
7955.ENSDARP00000100434 (15)
7955.ENSDARP00000101311 (15)
7955.ENSDARP00000101467 (15)
7955.ENSDARP00000101525 (15)
7955.ENSDARP00000101862 (15)
Q9LIE5 (1)
O24646 (1)
Q9FFA7 (1)
Q9LTJ6 (1)
Q9FN03 (1)
Q8LGH4 (1)
Q9M086 (1)
Q9SYX2 (1)
P43254 (1)

ENSEMBL ID

ENSDARG00000000103 (17)
ENSDARG00000001431 (17)
ENSDARG00000001915 (17)
ENSDARG00000001950 (17)
ENSDARG00000001993 (17)
ENSDARG00000002480 (17)
ENSDARG00000005039 (17)
ENSDARG00000005560 (17)
ENSDARG00000005791 (17)
ENSDARG00000006399 (17)
ENSDARG00000007219 (17)
ENSDARG00000009285 (17)
ENSDARG00000009484 (17)
ENSDARG00000010149 (17)
ENSDARG00000013078 (17)
ENSDARG00000016301 (17)
ENSDARG00000016393 (17)
ENSDARG00000017014 (17)
ENSDARG00000017624 (17)
ENSDARG00000018404 (17)
ENSDARG00000021124 (17)
ENSDARG00000022767 (17)
ENSDARG00000023323 (17)
ENSDARG00000025012 (17)
ENSDARG00000025301 (17)
ENSDARG00000025350 (17)
ENSDARG00000025635 (17)
ENSDARG00000027355 (17)
ENSDARG00000029406 (17)
ENSDARG00000031164 (17)

CHEBI ID

CHEBI:30769 (37)
CHEBI:15354 (35)
CHEBI:17368 (35)
CHEBI:16919 (34)
CHEBI:15891 (33)
CHEBI:17895 (33)
CHEBI:17596 (33)
CHEBI:15756 (33)
CHEBI:16708 (32)
CHEBI:17568 (32)
CHEBI:16335 (32)
CHEBI:16704 (31)
CHEBI:16737 (31)
CHEBI:16750 (30)
CHEBI:17154 (30)
CHEBI:15741 (29)
CHEBI:7916 (29)
CHEBI:17295 (28)
CHEBI:17748 (27)
CHEBI:16040 (27)
CHEBI:32816 (27)
CHEBI:17203 (27)
CHEBI:16015 (27)
CHEBI:17750 (26)
CHEBI:17821 (26)
CHEBI:15428 (26)
CHEBI:16027 (26)
CHEBI:16235 (25)
CHEBI:18012 (25)
CHEBI:17562 (25)

Metabolite Name

Adenine (25)
Hypoxanthine (25)
Guanosine (24)
Uridine (24)
Taurine (23)
Inosine (23)
Uracil (21)
Creatinine (21)
Palmitic acid (20)
Linoleic acid (20)
L-Arginine (19)
Adenosine (19)
Guanine (19)
Creatine (19)
Citric acid (18)
Uric acid (18)
L-Tyrosine (18)
Thymine (17)
Ornithine (17)
Deoxycholic acid (17)
L-Proline (17)
Cytosine (17)
Azelaic acid (17)
Thymidine (17)
Cholic acid (16)
Pantothenic acid (16)
Riboflavin (16)
L-Valine (16)
L-Phenylalanine (16)
Leucine (15)

First Public Date

2014 (6)
2023 (5)
2024 (2)
2021 (2)
2020 (2)
2015 (2)
2026 (1)
2025 (1)
2022 (1)
2018 (1)
2016 (1)

Modelling Approach

Ordinary differential equation model (4)

Lab affiliation

Chinese Academy of Sciences Shanghai Institute of Materia Medica (8)
State Key Laboratory of Genetic Engineering, Department of Biochemistry, School of Life Sciences, Fudan University, Shanghai 200438, China (8)
Institutes of Biomedical Sciences and department of Chemistry, Fudan University, Shanghai, China (6)
Huazhong Agricultural University (5)
Imperial College London (5)
Department of Cardiovascular Medicine, Center for Circadian Metabolism and Cardiovascular Disease, Southwest Hospital, Army Medical University; Chongqing, China. (4)
Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
Key Lab of Integrated Crop Pest Management of Shandong, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, China (4)
Proteomics (4)
Tsinghua University, China (4)
Zhejiang University (4)
Children's Hospital of Nanjing Medical University (3)
Department of Life Science, National Taiwan University (3)
Department of Medicine, Columbia University Irving Medical Center (3)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (3)
Key Laboratory of Tropical Marine Bio-resources and Ecology,South China Sea Institute of Oceanology, Chinese Academy of Sciences (3)
School of Integrative Plant Science Plant Biology Section, Cornell University (3)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (3)
Sichuan University (3)
State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, No.1 West Beichen Rd., Beijing 100101, China. (3)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (3)
The University of Chicago (3)
1. Key Laboratory of Photoelectric Conversion and Utilization of Solar Energy, Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China. 2. Shandong Energy Institute, Qingdao 266101, China. 3. Qingdao New Energy Shandong Laboratory, Qingdao 266101, China. (2)
Agriculture and Agrifood Canada Morden Research and Development Centre (2)
Beijing Key Laboratory of Protein Posttranslational Modifications and Cell Function, Department of Biochemistry and Biophysics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, 100191, China. (2)
Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (2)
Brain Injury Center, Renji Hospital, School of Medicine, Shanghai Jiao Tong University; Shanghai Institute of Head Trauma, Shanghai, China, 200127. (2)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
Clinical Research Division, Fred Hutchinson Cancer Research Center (2)

IsPrivate

False (4)

Modification

Not available (7)
15.994915 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
57.021464 (1)
79.966331 (1)
N6 (1)

Study type

Transcription profiling by array (441)
RNA-seq of coding RNA (132)
ChIP-seq (40)
Comparative genomic hybridization by array (17)
Methylation profiling by high throughput sequencing (15)
Unknown experiment type (14)
RNA-seq of non coding RNA (13)
Methylation profiling by array (12)
ChIP-chip by tiling array (11)
Other (11)
RNA-seq of coding RNA from single cells (11)
Genotyping by array (4)
Human - Single-cell sequencing (2)
Transcription profiling by tiling array (2)
ChIP-chip by array (2)
MicroRNA profiling by array (2)
Cell line - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Proteomic profiling by mass spectrometer (1)
Antigen profiling (1)
Transcription profiling by RT-PCR (1)
DNA-seq (1)

Release Date

2025 (8220)
2022 (7051)
2023 (6363)
2024 (6241)
2021 (5520)
2020 (3840)
2019 (2755)
2018 (2265)
2017 (2010)
2016 (1646)
2015 (1371)
2026 (1093)
2014 (1030)
2013 (721)
2012 (620)
2011 (510)
2010 (365)
2009 (282)
2008 (205)
2007 (86)
2005 (50)
2006 (49)
2004 (27)
2003 (17)
2001 (17)
2000 (16)
2002 (10)
1999 (6)
1998 (4)
1997 (1)

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Metabolomic assessment of acute cholestatic injuries induced by thioacetamide and by bile duct ligation, and the protective effects of Huang-Lian-Jie-Du-Decoction

Huang-Lian-Jie-Du-Decoction, a traditional Chinese formula, has been reported to protect liver from various injuries. Two cholestasis models of rats induced by thioacetamide and by bile duct ligation were established and treated with Huang-Lian-Jie-Du-Decoction. Nuclear Magnetic Resonance-based urin...

2016-06-08 | MTBLS149 | MetaboLights

Differential effects of Huang-Lian-Jie-Du Decoction on Alzheimer’s disease and normal rats

Introduction: Huang-Lian-Jie-Du Decoction (HLJDD), a botanical drug used in traditional medicine, has been used in the management of Alzheimer’s disease (AD). However, the mechanisms underlying its preventive effects remain inadequately understood, particularly due to the absence of metabolomic s...

2025-11-04 | MTBLS13256 | MetaboLights

Hydrogen vs Lactate as electron donor in Sulfate reduction

In order to obtain a global view of energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough and the proteins involved therein whole-genome microarrays were used to compare the transcriptional response of cells grown with hydrogen/sulfate, pyruvate/sulfate, lactate/thio...

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8037 | biostudies-arrayexpress

Acetone stress response in Desulfovibrio vulgaris

Desulfovibrio vulgaris has been studied extensively for its potential in the bioremediation of heavy metals and radionuclides. Hydrocarbons and solvents, as frequent environmental co-contaminants, have been reported to inhibit microbial activities and thereby pose a limitation on bioremediation effi...

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2009-08-08 | E-GEOD-5569 | biostudies-arrayexpress

Complete plastome sequence of Ardisia bullata G. H. Huang & G. Hao, an endemic species in Hainan.

Not available

S-EPMC7782065 | biostudies-literature

Pyruvate vs Lactate as electron donor in Sulfate reduction

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8071 | biostudies-arrayexpress

Thiosulfate vs Sulfate as electron acceptor in Sulfate reduction

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8072 | biostudies-arrayexpress

Genome wide analysis of liver histone H3K9 acetylation after partial hepatectomy in glucose-treated and control mice.

We report the results of AcH3K9 ChIP-Seq on regenerating liver harvested 12 h after partial hepatectomy (PH) from mice treated with supplemental parenteral dextrose (to delay onset of PH-induced hypoglycemia) or vehicle (as control). Examination of the effect of delaying PH-induced hypoglycemia on h...

ORGANISM(S): Mus musculus

2016-02-09 | E-GEOD-71496 | biostudies-arrayexpress

Energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough

This SuperSeries is composed of the following subset Series: GSE8015: Pyruvate fermentation vs Lactate-Sulfate GSE8037: Hydrogen vs Lactate as electron donor in Sulfate reduction GSE8071: Pyruvate vs Lactate as electron donor in Sulfate reduction GSE8072: Thiosulfate vs Sulfate as electron acceptor ...

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-04-05 | E-GEOD-8069 | biostudies-arrayexpress

Pyruvate fermentation vs Lactate-Sulfate

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8015 | biostudies-arrayexpress

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