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TranscriptomicsThe cytosolic iron-sulfur cluster assembly protein MMS19 regulates transcriptional gene silencing, DNA repair, and flowering time in Arabidopsis
To study how MMS19 and ABO4 affect gene expression, we performed RNA deep sequencing for the seedlings materials Col, mms19-1,and abo4 mutants. Compare the mRNA profiles of 14-day old seedlings materials of mutants (mms19-1 and abo4) to wild type Col by Illumina suquencing.
ORGANISM(S): Arabidopsis thaliana 
2015-04-09 | E-GEOD-67669 | biostudies-arrayexpress
TranscriptomicsThe splicing factor PRP31 is involved in transcriptional gene silencing and stress response in Arabidopsis
To study how PRP31, ZOP1 and STA1 affect gene expression and pre-mRNA splicing, we performed RNA deep sequencing for the seedlings materials C24, prp31, zop1, and sta1 mutants. Compare the mRNA profiles of 10-day old seedlings materials of mutants (prp31, zop1 and sta1) to wild type C24 by Illumina ...
ORGANISM(S): Arabidopsis thaliana 
2015-03-02 | E-GEOD-63757 | biostudies-arrayexpress
TranscriptomicsA novel BRAT1-BRP1 complex recognizes histone acetylation and mediates active DNA demethylation and transcriptional activation in Arabidopsis
This SuperSeries is composed of the SubSeries listed below. Refer to individual Series
ORGANISM(S): Arabidopsis thaliana 
2015-04-14 | E-GEOD-67799 | biostudies-arrayexpress
TranscriptomicsA novel BRAT1–BRP1 complex recognizes histone acetylation and mediates active DNA demethylation and transcriptional activation in Arabidopsis [RNA-Seq]
To identify BRAT1 target loci at the whole-genome level, we performed RNA deep sequencing and examined the transcript levels of transposable elements and genes in the wild type, brat1, nrpe1, and brat1nrpe1. Compare the mRNA profiles of 10-day old seedlings materials of mutants (brat1, nrpe1, and br...
ORGANISM(S): Arabidopsis thaliana 
2015-04-14 | E-GEOD-67797 | biostudies-arrayexpress
GenomicsA novel BRAT1–BRP1 complex recognizes histone acetylation and mediates active DNA demethylation and transcriptional activation in Arabidopsis [BS-Seq]
Active DNA demethylation is an important epigenetic phenomenon in many eukaryotes. In Arabidopsis thaliana, ROS1, a 5-methylcytosine DNA glycosylase, is responsible for active DNA demethylation via a base excision repair process. Here, we found that Bromodomain and ATPase domain-containing protein 1...
ORGANISM(S): Arabidopsis thaliana 
2015-04-14 | E-GEOD-67798 | biostudies-arrayexpress
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