Huang John J - OmicsDI

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Unknown (528)
Genomics (68)
Transcriptomics (26)
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Metabolomics (1)

Organisms

Homo sapiens (82)
Streptomyces coelicolor (13)
Mus musculus (4)
Zea mays (1)
Staphylococcus aureus (1)
Ovis aries (1)
Arabidopsis thaliana (1)
Drosophila melanogaster (1)

Repository

EGA (67)
biostudies-arrayexpress (27)
pride (9)
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Tissue

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Disease

Multiple myeloma (1)
Not Available (1)
Chronic kidney disease (1)
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Technology Type

Mass Spectrometry (9)
Shotgun proteomics (6)
Affymetrix OncoScan FFPE Express (1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Mass spectrometry (1)
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Chemical cross-linking coupled with mass spectrometry proteomics (1)
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Instrument Platform

Illumina NovaSeq 6000 (2)
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Instrument (1)
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Publication Date

2010 (11)
2023 (4)
2022 (3)
2014 (3)
2013 (3)
2012 (3)
2008 (3)
2019 (3)
2025 (3)
2021 (2)
2015 (1)
2011 (1)
2007 (1)
2017 (1)
2016 (1)
2026 (1)
2018 (1)

CHEBI ID

CHEBI:132542 (1)
CHEBI:132579 (1)
CHEBI:134242 (1)
CHEBI:134487 (1)
CHEBI:134587 (1)
CHEBI:137552 (1)
CHEBI:137590 (1)
CHEBI:140940 (1)
CHEBI:140946 (1)
CHEBI:140951 (1)
CHEBI:156118 (1)
CHEBI:16113 (1)
CHEBI:183249 (1)
CHEBI:183798 (1)
CHEBI:183799 (1)
CHEBI:183800 (1)
CHEBI:183804 (1)
CHEBI:64431 (1)
CHEBI:64446 (1)
CHEBI:64483 (1)
CHEBI:64516 (1)
CHEBI:64517 (1)
CHEBI:64521 (1)
CHEBI:64549 (1)
CHEBI:64559 (1)
CHEBI:64560 (1)
CHEBI:64561 (1)
CHEBI:64566 (1)
CHEBI:64568 (1)
CHEBI:65293 (1)

Metabolite Name

AcCa (12:0) (1)
CE (16:1) (1)
CE (18:0) (1)
CE (18:1) (1)
CE (18:2) (1)
CE (20:2) (1)
CE (20:4) (1)
Cer (d34:0)a.(d18:0/16:0) (1)
Cer (d34:0)b.(d16:0/18:0) (1)
Cer (d40:0).(d18:0/22:0) (1)
Cer (d40:1)b.(d18:1/22:0) (1)
Cer (d42:1)a.(d18:0/24:1) (1)
Cer (d42:1)b.(d18:1/24:0) (1)
Cer (d42:2)b.(d18:1/24:1) (1)
Cer (d44:2)a.(d18:1/26:1) (1)
Cer (d44:2)b.(d20:1/24:1) (1)
Cer (m34:0).(m18:0/16:0) (1)
Cer (m34:2).(m18:2/16:0) (1)
Cer (m36:2).(m18:2/18:0) (1)
Cer (m38:0).(m18:0/20:0) (1)
Cer (m38:2)b.(m18:2/20:0) (1)
Cholesterol.-H2O (1)
DAG (32:0).(30:0/FA16:0) (1)
DAG (36:2).(36:2/FA18:1) (1)
DAG (38:5).(38:5/FA18:1) (1)
FA (14:0) (1)
FA (17:1) (1)
FA (20:0) (1)
FA (22:4) (1)
GM3 (d36:1).(d18:1/18:0) (1)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (20)
RNA-seq of coding RNA from single cells (2)
RNA-seq of coding RNA (2)
Unknown experiment type (1)
Genotyping by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (70)
2021 (68)
2025 (61)
2023 (57)
2024 (53)
2020 (36)
2018 (36)
2017 (34)
2019 (27)
2010 (22)
2016 (19)
2015 (17)
2013 (9)
2012 (9)
2011 (9)
2014 (8)
2008 (7)
2026 (7)
2009 (4)
2007 (2)

Lab affiliation

Centre for Developmental Neurobiology, King's College London (1)
Department of Cellular & Molecular Physiology Milton S. Hershey Medical Center Penn State College of Medicine Hershey, PA, USA (1)
Department of Chemistry, Boston University, USA (1)
Division of Genome Sciences and Cancer, The John Curtin School of Medical Research, The Australian National University, Canberra (1)
Institute for Systems Biology (1)
John van Geest Cancer Research Centre, School of Science and Technology, Nottingham Trent University, UK (1)
Shenzhen key laboratory of metabolic health, Center for Energy Metabolism and Reproduction, Shenzhen Institutes of Advanced technology, Chinese Academy of Sciences, Shenzhen, China (1)
Stanford University, School of Medicine, Department of Molecular and Cellular Physiology, USA (1)
University of Victoria (1)

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Affymetrix SNP array data for metastatic melanoma specimens

Comparison between the copy number of differentially methylated sites between lymph node metastasis from melanoma patients with good prognosis and melanoma brain metastasis. All samples are taken from different patients, and were established as cell lines in the John Wayne Cancer Institute. Sixteen ...

ORGANISM(S): Homo sapiens

2013-09-19 | E-GEOD-44019 | biostudies-arrayexpress

S. coelicolor WL6268 R5- medium time course study

Antibiotic biosynthesis in Streptomyces species is controlled by a complex genetic and biochemical network of global and pathway specific regulators. Details of their precise interactions in mediating temporal and spatial expression of secondary metabolite genes remain poorly defined. In this study,...

ORGANISM(S): Streptomyces coelicolor

2010-10-25 | E-GEOD-21808 | biostudies-arrayexpress

S. coelicolor YSK3654 R5- medium time course study

ORGANISM(S): Streptomyces coelicolor

2010-10-25 | E-GEOD-21807 | biostudies-arrayexpress

S. coelicolor LY2517 R5- medium time course study (Culture # 1)

ORGANISM(S): Streptomyces coelicolor

2012-12-19 | E-GEOD-21809 | biostudies-arrayexpress

S. coelicolor LY2517 R5- medium time course study (Culture # 2)

ORGANISM(S): Streptomyces coelicolor

2012-12-19 | E-GEOD-21810 | biostudies-arrayexpress

S. coelicolor LY2517 R5- medium time course study

This SuperSeries is composed of the following subset Series: GSE21809: S. coelicolor LY2517 R5- medium time course study (Culture # 1) GSE21810: S. coelicolor LY2517 R5- medium time course study (Culture # 2) Refer to individual Series

ORGANISM(S): Streptomyces coelicolor

2010-10-25 | E-GEOD-21811 | biostudies-arrayexpress

S. coelicolor Wild Type R5- Medium Time-course Study

Many biological processes are intrinsically dynamic, incurring profound changes at both molecular and physiological levels. Systems analyses of such processes incorporating large-scale transcriptome or proteome profiling can be quite revealing. Although consistency between mRNA and proteins is often...

ORGANISM(S): Streptomyces coelicolor

2010-06-11 | E-GEOD-7172 | biostudies-arrayexpress

Identification of regulators of polyploidization presents therapeutic targetsfor treatment of AMKL

Wen Q, Goldenson B, Silver SJ, Schenone M, Dancik V, Huang Z, Wang LZ, Lewis TA, An WF, Li X, Bray MA, Thiollier C, Diebold L, Gilles L, Vokes MS, Moore CB, Bliss-Moreau M, Verplank L, Tolliday NJ, Mishra R, Vemula S, Shi J, Wei L, Kapur R, Lopez CK, Gerby B, Ballerini P, Pflumio F, Gilliland DG, Go...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2014-01-27 | MSV000078536 | MassIVE

S. coelicolor YSK3225 R5- Medium Time-course Study (Culture #1)

ORGANISM(S): Streptomyces coelicolor

2010-06-11 | E-GEOD-8108 | biostudies-arrayexpress

S. coelicolor Wild Type Time-course Study in R5- medium (Culture#1)

ORGANISM(S): Streptomyces coelicolor

2010-06-10 | E-GEOD-8084 | biostudies-arrayexpress