Huang Yu Y - OmicsDI

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Unknown (8644)
Proteomics (176)
Genomics (68)
Transcriptomics (35)
Metabolomics (20)
Models (2)

Organisms

Homo sapiens (145)
Allexis (66)
Mus musculus (31)
Staphylococcus aureus (5)
Arabidopsis thaliana (4)
Severe acute respiratory syndrome coronavirus 2 (4)
Rattus norvegicus (3)
cellular organisms (2)
Drosophila melanogaster (2)
Brassica oleracea (1)
Siniperca chuatsi (1)
Clonorchis sinensis (1)
Oryza sativa Japonica Group (1)
Danio rerio (1)
12461 (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Bos taurus (1)
Candida albicans (1)
Carassius gibelio (1)
Elaphe taeniura (1)
Escherichia coli (1)
Macaca fascicularis fascicularis (1)
Olivierus martensii (1)
Oryctolagus cuniculus (1)
Rattus rattus (1)
Serratia marcescens LCT-SM213 (1)
Solanum lycopersicum (1)
Solanum tuberosum (1)
Staphylococcus warneri (1)
Vibrio parahaemolyticus RIMD 2210633 (1)

Repository

iProX (108)
pride (66)
EGA (61)
biostudies-arrayexpress (42)
MetaboLights (20)
BioModels (2)
MassIVE (2)

Tissue

Cell culture (23)
Brain (6)
B cell (4)
Epithelial cell (4)
Byssus (2)
Fibroblast (2)
HeLa cell (2)
Hepatocyte (2)
Leaf (2)
Liver (2)
Plant cell (2)
Stem cell (2)
Whole body (2)
Artery (1)
Blood plasma (1)
Blood serum (1)
Burkitt lymphoma cell (1)
Decidua (1)
Embryo (1)
Epithelial cell of lung (1)
Extracellular vesicle (1)
Flower (1)
Heart (1)
Lung (1)
Neural progenitor cell (1)
Neutrophil (1)
Plasma cell (1)
Regulation of gastric acid secretion (1)
Seed (1)
Seminal plasma (1)

Disease

Disease free (3)
Breast cancer (2)
Disease (2)
Colon cancer (1)
Diffuse gastric cancer (1)
Diffuse large B-cell lymphoma (1)
Head and neck squamous cell carcinoma (1)
IgA glomerulonephritis (1)
Lung carcinoma (1)
Multidrug-resistant tuberculosis (1)
Multiple myeloma (1)
Non-small cell lung carcinoma (1)

Technology Type

Mass Spectrometry (66)
Shotgun proteomics (36)
Mass spectrometry (19)
Bottom-up proteomics (12)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-dependent acquisition (6)
Gel-based experiment (6)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Illumina HiSeq 2000, ILLUMINA (2)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
SRM/MRM (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (9)
Liquid Chromatography MS - negative - reverse phase (8)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - positive - hilic (3)
Illumina HiSeq 2000 (2)
LTQ Orbitrap Elite (1)
Orbitrap Eclipse (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - alternating – hilic (1)
6530 Q-TOF LC/MS (Agilent) (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2025 (33)
2022 (24)
2024 (21)
2020 (17)
2021 (16)
2023 (12)
2012 (10)
2019 (10)
2018 (9)
2013 (9)
2014 (7)
2016 (6)
2026 (5)
2015 (3)
2010 (3)
2009 (2)
2011 (1)
2017 (1)

UNIPROT ID/AC

P17676 (2)
P15260 (2)
P67775 (2)
P62136 (2)
P08887 (2)
P40189 (2)
P01579 (2)
O14543 (2)
P42224 (2)
P40763 (2)
O60674 (2)
P05231 (2)
P01112 (2)
P04049 (2)
Q02750 (2)
P28482 (2)
Q07889 (2)
Q06124 (2)
P62993 (2)
O15524 (2)
P23458 (2)

CHEBI ID

CHEBI:17154 (10)
CHEBI:16347 (10)
CHEBI:17748 (9)
CHEBI:17568 (9)
CHEBI:16467 (9)
CHEBI:17203 (9)
CHEBI:55328 (9)
CHEBI:27480 (9)
CHEBI:17405 (9)
CHEBI:16704 (9)
CHEBI:16919 (9)
CHEBI:17895 (9)
CHEBI:17351 (9)
CHEBI:17562 (8)
CHEBI:28875 (8)
CHEBI:16335 (8)
CHEBI:17509 (8)
CHEBI:16359 (8)
CHEBI:15354 (8)
CHEBI:28865 (8)
CHEBI:15756 (8)
CHEBI:17368 (8)
CHEBI:42504 (7)
CHEBI:16040 (7)
CHEBI:16708 (7)
CHEBI:16750 (7)
CHEBI:16870 (7)
CHEBI:28842 (7)
CHEBI:17015 (7)
CHEBI:16393 (7)

Metabolite Name

Uracil (6)
L-Proline (6)
L-Arginine (6)
Adenosine (6)
Guanine (6)
Cytosine (6)
Cytidine (6)
Guanosine (6)
Creatine (6)
L-Carnitine (6)
Hypoxanthine (6)
Betaine (5)
Acetylcholine (5)
Cortisol (5)
Choline (5)
Taurine (5)
Taurocholic acid (5)
Cholic acid (5)
Pipecolic acid (5)
N-Acetyl-L-phenylalanine (5)
Linoleic acid (5)
Thymidine (5)
Creatinine (5)
Glycerophosphocholine (5)
L-Valine (5)
Stearoylcarnitine (4)
Thymine (4)
Sphingosine (4)
Niacinamide (4)
4-Pyridoxic acid (4)

IsPrivate

False (2)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (15)
RNA-seq of coding RNA (9)
Methylation profiling by array (6)
ChIP-seq (4)
Methylation profiling by high throughput sequencing (3)
RNA-seq of non coding RNA (3)
Other (1)
Genotyping by high throughput sequencing (1)

Release Date

2025 (1467)
2022 (1246)
2023 (1104)
2024 (1083)
2021 (980)
2020 (651)
2019 (450)
2018 (348)
2017 (317)
2016 (249)
2015 (195)
2026 (175)
2014 (148)
2013 (84)
2012 (59)
2011 (47)
2010 (34)
2009 (13)
2008 (11)
2007 (7)
2005 (5)
2004 (4)
2002 (4)
2006 (2)
2003 (2)
1998 (1)

Lab affiliation

Department of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan, Hubei,China (2)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (2)
Wiita Lab, Department of Laboratory Medicine, University of California San Francisco, USA (2)
Zhejiang University (2)
1 Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. 2 Center of Clinical Oncology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, China. 3 State Key Laboratory Jiangsu Center for the Collaboration and Innovation of Cancer Biotherapy, Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. (1)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
Agronomy College, Henan Agricultural University, China (1)
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China (1)
Brain Tumor Center, Division of Experimental Hematology and Cancer Biology, Cincinnati Children’s Hospital Medical Center, Cincinnati, OH 45229, USA (1)
Breast Tumor Center Sun Yat-Sen Memorial Hospital Sun Yat-Sen University 107 Yanjiang West Road Guangzhou 510120, P.R.China (1)
CAS Key Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences,China. (1)
Center for Biomedical Mass Spectrometry, Department of Biochemistry, Boston University School of Medicine (1)
Center for Tuberculosis Control of Guangdong Province, Guangzhou, 510630, China (1)
College of Marine Life Sciences, Ocean University of China, Qingdao, China (1)
Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, Guangdong, China (1)
Department of Dermatology, Huashan Hospital, Fudan University, No.12 Wulumuqizhong Road, Shanghai 200040, China. (1)
Department of Microbiology & Molecular Genetics University of California, Irvine Irvine, California, 92697 USA (1)
Department of Nephrology, Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciences, Guangzhou, China;Guangdong-Hong Kong Joint Laboratory on Immunological and Genetic Kidney Diseases; Guangzhou, China. (1)
Department of Orthopedics, The Fourth Medical Centre, Chinese PLA General Hospital, Beijing, China National Clinical Research Center for Orthopedics, Sports Medicine & Rehabilitation, Beijing, China (1)
Department of Pathology, The First Affiliated Hospital, Sun Yat-sen University (1)
Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA (1)
Department of cardiothoracic surgery, the First Affiliated Hospital of Chengdu Medical College (1)
Department of orthopaedics, the First Affiliated Hopital of Soochow University, Suzhou, China 215006 (1)
Guangxi Disease Prevention and Control Center (1)
Hangzhou Women's Hospital, Hangzhou, China (1)
Institute for Cancer Research, Shenzhen Bay Laboratory, Shenzhen, Guangdong, 518107, China (1)
Institute of Animal Husbandry and Veterinary Sciences, Zhejiang Academy of Agricultural Sciences (1)
Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, Zhejiang, China, 310027 (1)
Institute of Reproductive Medicine, Medical School, Nantong University, Nantong 226001, China (1)

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Construction of efficient virus removal and micropropagation system for 'Yu Tai Yi Hao' chrysanthemum.

Not available

S-EPMC12603245 | biostudies-literature

Traditional Chinese Medicine Pien-Tze-Huang Inhibits Colorectal Cancer Growth and Immune Evasion by Reducing β-catenin Transcriptional Activity and PD-L1 Expression.

Not available

S-EPMC8850789 | biostudies-literature

Sperm but not oocyte DNA methylome is inherited by zebrafish early embyros

5-methylcytosine is a major epigenetic modification sometimes called "the fifth nucleotide". However, our knowledge of how offspring inherit the DNA methylome from parents is limited. We generated nine single-base resolution DNA methylomes including zebrafish gametes and early embryos. The...

ORGANISM(S): Danio rerio

2013-05-20 | E-GEOD-44075 | biostudies-arrayexpress

Plasma metabolome alteration in dairy cows with left displaced abomasum before and after surgical correction

Left displaced abomasum (LDA) leads to substantial changes in the metabolism of dairy cows. Surgical correction of LDA can rapidly improve the health of cows; however, changes in metabolism following surgery are rarely described. To investigate the changes of plasma metabolome in cows with LDA befor...

2022-08-17 | MTBLS4126 | MetaboLights

Integrative Structural Characterization of the Human Canonical and Non-canonical Cop9 Signalosome Complexes

The COP9 signalosome (CSN) is an evolutionarily conserved protein complex that functions as a deneddylase to inactivate Cullin-RING E3 ligases for controlling protein ubiquitination. CSN possesses structural flexibility that is important for its activation upon binding to a diverse array of CRLs. Th...

ORGANISM(S): Homo sapiens (Human)

2020-02-04 | PXD014673 | Pride

Mechanism of interventional effect and targets of Zhuyu Pill in regulating and suppressing colitis and cholestasis

Zhuyu pill (ZYP) is a traditional Chinese medicine prescription composed of two drugs, Coptis chinensis Franch. and Tetradium ruticarpum (A. Jussieu) T. G. Hartley, and is commonly used in the clinical treatment of diseases of the digestive system. However, the mechanism underly...

2022-11-02 | MTBLS4980 | MetaboLights

Evaluation and mechanism study of Pien Tze Huang against EV-A71 infection

Not available

S-EPMC10637388 | biostudies-literature

The ratio of dihomo-γ-linolenic acid to deoxycholic acid species is a potential biomarker for the metabolic abnormalities in obesity.

Not available

S-EPMC6191069 | biostudies-literature

Grain-filling characteristics and yield formation of wheat in two different soil fertility fields in the Huang-Huai-Hai Plain.

Not available

S-EPMC9364837 | biostudies-literature

Dry Matter Production, Photosynthesis of Flag Leaves and Water Use in Winter Wheat Are Affected by Supplemental Irrigation in the Huang-Huai-Hai Plain of China.

Not available