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Genomics (2697)
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Organisms

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marine metagenome (1)
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Organisms

Homo sapiens (460)
Mus musculus (331)
Rattus norvegicus (42)
Arabidopsis thaliana (34)
Saccharomyces cerevisiae (20)
Sus scrofa (18)
Drosophila melanogaster (14)
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rhizosphere metagenome (3)
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Amphiduros pacificus (2)

Repository

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geo (970)
pride (282)
biostudies-arrayexpress (242)
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Tissue

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Disease

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Technology Type

Mass Spectrometry (284)
Shotgun proteomics (136)
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Affinity purification coupled with mass spectrometry proteomics (43)
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Mass spectrometry (21)
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Chemical cross-linking coupled with mass spectrometry proteomics (10)
Affinity proteomics (4)
SWATH MS (4)
All-ion fragmentation (3)
SRM/MRM (3)
DiaPASEF (2)
HDMSE (2)
MSE (2)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2500 (1)
EI (1)
ESI (1)

Instrument Platform

Illumina NovaSeq 6000 (14)
NextSeq 500 (13)
Illumina HiSeq 2000 (11)
Illumina HiSeq 2500 (5)
Illumina HiSeq 4000 (5)
Orbitrap Fusion Lumos (5)
Q Exactive HF-X (4)
LTQ Orbitrap (3)
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Illumina NovaSeq X (2)
NA (2)
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SPF Animal Room (1)
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Biosafety Cabinet, Liquid Nitrogen Tank, -80°C Freezer (1)
DNA 7500 Bioanalyzer Chips (1)
Agilent Bioanalyzer (1)
Not applicable (1)
Illumina iScan (1)
- (1)
Illumina (1)
Illumina HiSeq 1000 (1)
DNBSEQ-T7 (1)
BGISEQ-500 (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
NextSeq 550 (1)

Publication Date

2025 (236)
2026 (230)
2024 (208)
2023 (153)
2021 (145)
2022 (134)
2020 (74)
2019 (65)
2016 (59)
2014 (59)
2015 (53)
2017 (47)
2018 (41)
2012 (36)
2011 (32)
2013 (30)
2010 (11)
2009 (10)
2008 (5)
2007 (2)
2006 (1)
2005 (1)

UNIPROT ID/AC

1FEH1_WHEAT (2)
4565.Traes_1AL_1205BBAE8.1 (2)
4565.Traes_1AL_1DC9BD199.1 (2)
4565.Traes_1AL_2EF38544E.1 (2)
4565.Traes_1AL_3B7E92634.1 (2)
4565.Traes_1AL_968B97E50.1 (2)
4565.Traes_1AL_B3E4C9B23.1 (2)
4565.Traes_1AL_BB4758A6F.1 (2)
4565.Traes_1AL_D789B5634.1 (2)
4565.Traes_1AL_D8FE82B94.1 (2)
4565.Traes_1AS_54A7FBBFC.1 (2)
4565.Traes_1AS_6AC8C20AE.1 (2)
4565.Traes_1AS_7EB01951F.1 (2)
4565.Traes_1AS_E14F4EB86.1 (2)
4565.Traes_1BL_07C296E67.1 (2)
4565.Traes_1BL_12E12ED7C.1 (2)
4565.Traes_1BL_212EC3A2C.1 (2)
4565.Traes_1BL_23485C382.2 (2)
4565.Traes_1BL_28FC38E43.1 (2)
4565.Traes_1BL_38CAFCA561.1 (2)
4565.Traes_1BL_38FE8B094.2 (2)
4565.Traes_1BL_55033DAE8.2 (2)
4565.Traes_1BL_66D2E2865.2 (2)
4565.Traes_1BL_6837B7A81.2 (2)
4565.Traes_1BL_7B1831D79.2 (2)
4565.Traes_1BL_8028DEB2B.1 (2)
4565.Traes_1BL_8601EC2E0.1 (2)
4565.Traes_1BL_917AB0D4B.1 (2)
4565.Traes_1BL_9908E325A.2 (2)
4565.Traes_1BL_99C748D51.1 (2)

CHEBI ID

CHEBI:38068 (1)
CHEBI:75989 (1)
CHEBI:71674 (1)
CHEBI:27667 (1)
CHEBI:61166 (1)
CHEBI:61931 (1)
CHEBI:57684 (1)
CHEBI:60374 (1)
CHEBI:57809 (1)
CHEBI:16037 (1)
CHEBI:2411 (1)
CHEBI:44245 (1)
CHEBI:64834 (1)
CHEBI:10965 (1)
CHEBI:71673 (1)
CHEBI:57508 (1)
CHEBI:60332 (1)
CHEBI:59648 (1)
CHEBI:16895 (1)
CHEBI:48942 (1)
CHEBI:57510 (1)
CHEBI:58131 (1)
CHEBI:62213 (1)
CHEBI:48944 (1)
CHEBI:58897 (1)
CHEBI:57829 (1)
CHEBI:58089 (1)
CHEBI:60057 (1)
CHEBI:60047 (1)
CHEBI:10980 (1)

Metabolite Name

Pantothenic acid (11)
L-Arginine (10)
Adenosine (10)
L-Tryptophan (10)
L-Tyrosine (10)
L-Aspartic acid (8)
Glutathione (8)
5-Hydroxyindoleacetic acid (8)
Citric acid (8)
Palmitic acid (8)
Adenine (8)
Uric acid (8)
Uridine (8)
Sucrose (8)
Eicosadienoic acid (7)
S-Adenosylhomocysteine (7)
Succinic acid (7)
L-Threonine (7)
L-Histidine (7)
L-Glutamic acid (7)
Taurine (7)
Guanine (7)
Cytosine (7)
Suberic acid (7)
Oleic acid (7)
Hexadecanedioic acid (7)
Azelaic acid (7)
Myristic acid (7)
Creatinine (7)
Creatine (7)

First Public Date

2025 (571)
2024 (533)
2026 (454)
2023 (318)
2022 (152)
2021 (145)
2020 (80)
2019 (65)
2014 (51)
2018 (44)
2017 (35)
2016 (21)
2015 (16)
2013 (15)

Modelling Approach

Computational model (3)
Ordinary differential equation model (1)
Constraint-based model (1)

Study status

Completed (2)
Enrolling by invitation (1)
Recruiting (1)

Lab affiliation

Department for Biochemistry, Max F. Perutz Laboratories, University of Vienna, Dr. Bohr-Gasse 9, A-1030 (7)
Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (3)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium (3)
Head of Proteomics The Francis Crick Institute 1 Midland Road London NW1 1AT U.K. (3)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (3)
Basilbiotech, Incheon 22002, Republic of Korea. (2)
Center for Molecular Biology of Heidelberg University (ZMBH), 69120 Heidelberg, Germany (2)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 82 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (2)
Departments of Immunology and Cell Biology Faculty of Medicine and Health Sciences Université de Sherbrooke Sherbrooke, QC J1H 5N4 Canada (2)
EDyP (2)
Fernando Garcia Martinez Ph.D. Proteomics & MS Specialist Proteomics Unit, Spanish National Cancer Research Centre (CNIO) Melchor Fernández Almagro 3. E28029 MADRID, SPAIN. Phone +34 912246900 ext 3112 (2)
GSK Chair in Chemical Biology, Imperial College London Satellite Group Leader, Francis Crick Institute Founder & SAB, Myricx Bio https://myricxbio.com/ Room 301B, Molecular Sciences Research Hub, White City Campus 82 Wood Lane, London W12 0BZ, UK Tel.: 020759 + Ext. 43752 or 45821 (group) http://www.imperial.ac.uk/tate-group/ (2)
Goethe-Universität Frankfurt, Georg-Speyer-Haus, Paul-Ehrlich-Str. 42-44, Frankfurt am Main, GERMANY (2)
State Key Laboratory of Microbial Metabolism (2)
Traditional Chinese Medicine Hospital Affiliated to Xinjiang Medical University (2)
UCSF (2)
University of Alabama at Birmingham, Department of Pathology, Division MCP, O'Neal Comprehensive Cancer Center (2)
University of Warwick (2)
1 Department of Urology, 2 Upstate Cancer Center, 3 Department of Biochemistry and Molecular Biology, SUNY Upstate Medical University, 750 E. Adams St., Syracuse, NY 13210, USA (1)
1.Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland. 2.Department for BioMedical Research, University of Bern, 3008 Bern, Switzerland. 3. Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland. (1)
1Department of Biochemistry and Biophysics, School of Medicine, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, United States (1)
1Department of Medicine, University of Minnesota, 420 Delaware Street, SE, Minneapolis, Minnesota 55455, USA (1)
1Department of Neurosurgery, Yale School of Medicine, New Haven, CT, USA. Department of Neurosurgery, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, USA Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA (1)
Aging and Muscle Metabolism Lab, Department of Biomedical Sciences & Service of Endocrinology, Diabetes and Metabolism, Faculty of Biology and Medicine, Lausanne University Hospital and University of Lausanne, Bugnon 7, 1005 Lausanne, Switzerland (1)
Babraham Institute Cambridge UK (1)
Bar-Ilan university, Israel (1)
Bascom Palmer Eye Institute, Department of Ophthalmology, Miller School of Medicine at University of Miami, Miami, FL 33136, USA +1 (305) 4824103 (1)
Basic Forestry and Proteomics Research Center (1)
Beijing Tongren Hospital, Capital Medical University (1)

Keyword

Underserved populations (1)
Screening (1)

IsPrivate

False (9)

Model Flag

Non Kinetic (3)

Submitter Keywords

Ersilia (3)
Machine Learning Model (3)
FAIR-AIML (1)

Classification

bacteria (21)
fungi (3)
helminths (1)
viruses (1)
protozoa (1)

Modification

Not available (1)

Study type

Transcription profiling by array (121)
RNA-seq of coding RNA (45)
ChIP-seq (27)
RNA-seq of coding RNA from single cells (8)
RNA-seq of non coding RNA (8)
Other (6)
RNA-seq of total RNA (4)
Interventional (4)
Spatial transcriptomics by high-throughput sequencing (3)
ATAC-seq (3)
Methylation profiling by array (3)
RIP-seq (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
Animal - Single-cell sequencing (1)
Cell line - One-color microarray (1)
Cell line - High-throughput sequencing (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Bisulfite-seq (1)
Hi-C (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
DNA-seq (1)

Release Date

2022 (3303)
2025 (3052)
2023 (2897)
2024 (2544)
2021 (2466)
2020 (1722)
2019 (1034)
2018 (724)
2017 (512)
2026 (436)
2016 (368)
2015 (334)
2014 (259)
2013 (163)
2012 (150)
2011 (107)
2010 (66)
2009 (49)
2008 (37)
2007 (19)
2006 (16)
2005 (6)
2004 (3)
2002 (2)
2001 (2)
2000 (1)

Location

United States (2)
United Kingdom (2)

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NC HHEAR Hub Pilot Study within the HHEAR Consortium

Not available

ORGANISM(S): Homo sapiens

ST002103 | MetabolomicsWorkbench

MaHPIC Experiment HuB - Metabolomics analysis of human plasma from patients infected with Plasmodium falciparum and P.vivax for discovery of diagnostic markers of malaria

MaHPIC Experimental Description:
This study is based on archived plasma from samples collected between 2011 and 2014. Patients in Thailand who were infected with Plasmodium falciparum (30 subjects), P. vivax (30 subjects), co-infected with P. falciparum and P. viv...

2018-09-05 | MTBLS664 | MetaboLights

Screening Hub Genes Related to the Recovery Phase of Irradiation Injury by Microarray Analysis Combined with Integrated Gene Network

Microarray analysis was used to identify the differentially expressed genes. Bioinformatics analyses integrated with databases and text-mined gene network were conducted to understand irradiation-related hub genes, pathways and biological processes. Our hypothesis in these paper are: 1) the expressi...

ORGANISM(S): Mus musculus

2013-06-17 | E-GEOD-28195 | biostudies-arrayexpress

Mesomycoplasma hyorhinis HUB-1

Mycoplasma hyorhinis HUB-1 genome project

PRJNA51405 | ENA

TMT analysis of flagellum skeletons from MIP knockdown parasites

TMT data associated with Shimogawa et al. 'FAP106 is an interaction hub required for stable assembly of conserved and lineage-specific proteins at the cilium inner junction'

ORGANISM(S): Trypanosoma Brucei (ncbitaxon:5691)

2022-11-07 | MSV000090661 | MassIVE

APEX2 proximity proteomics of microtubule inner proteins FAP45 and FAP52

APEX2-based proximity proteomics data associated with Shimogawa et al. 'FAP106 is an interaction hub required for stable assembly of conserved and lineage-specific proteins at the cilium inner junction'

ORGANISM(S): Trypanosoma Brucei (ncbitaxon:5691)

2022-11-07 | MSV000090660 | MassIVE

A reductionist approach using primary and metastatic cell-derived extracellular vesicles reveals hub proteins associated with oral cancer prognosis

Not available

ORGANISM(S): Homo sapiens

ST001755 | MetabolomicsWorkbench

Boletus edulis strain:Hub 8

Boletus edulis Hub 8 Gene Expression Profiling - Boled_T_R1 transcriptome

PRJNA536051 | ENA

Boletus edulis strain:Hub 8

Boletus edulis Hub 8 Gene Expression Profiling - Boled_T_R2 transcriptome

PRJNA536052 | ENA