Hudson M M - OmicsDI

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Unknown (2116)
Proteomics (63)
Transcriptomics (54)
Genomics (26)
Metabolomics (11)
Multiomics (1)

Organisms

Homo sapiens (74)
Mus musculus (25)
Rattus norvegicus (9)
Escherichia coli (7)
Glycine max (5)
Gallus gallus (3)
Synechocystis sp. PCC 6803 substr. Kazusa (3)
Arabidopsis thaliana (2)
Bacteria (2)
Bombus terrestris (2)
Cupriavidus necator H16 (2)
Apis mellifera scutellata (1)
Miscanthus x giganteus (1)
Culex quinquefasciatus (1)
Musca domestica (1)
Neisseria meningitidis (1)
Listeria monocytogenes (1)
Zea mays (1)
Oryza sativa (1)
Anopheles gambiae (1)
Bordetella pertussis (1)
Bos taurus (1)
Saccharomyces cerevisiae (1)
Drosophila melanogaster (1)
Hydrogenophaga pseudoflava (1)
Ovis aries (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (1)
Synechococcus elongatus PCC 7942 = FACHB-805 (1)
Synechocystis sp. PCC 6803 (1)
Synechocystis sp. PCC 6803 substr. GT-I (1)

Organisms

Homo sapiens (1)

Repository

pride (61)
biostudies-arrayexpress (59)
EGA (18)
MetaboLights (10)
MassIVE (2)
ENA (2)
geo (1)
LINCS (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (11)
Heart (9)
Embryonic stem cell (4)
Epithelial cell (4)
Cardiomyocyte cell line (3)
Photosynthetic cell (3)
Skeletal muscle (3)
Colon (2)
Erythrocyte (2)
Fibroblast (2)
Myoblast cell line (2)
Macrophages (1)
B cell (1)
Blood (1)
Blood plasma (1)
Bone marrow (1)
Breast (1)
CD4 positive T lymphocyte (1)
Embryo (1)
Epithelial cell of cervix (1)
Liver (1)
Lymph node (1)
Macrophage (1)
Monocyte (1)
Primary cell (1)
Rumen epithelium (1)
Skeletal muscle cell line (1)
Spleen (1)
Stem cell (1)
T cell (1)

Disease

Disease free (6)
Cardiovascular system disease (5)
Colorectal cancer (1)
Autosomal recessive limb-girdle muscular dystrophy type 2B (1)
Brain cancer (1)
Breast cancer (1)
COVID-19 (1)
Cervix carcinoma (1)
Colon cancer (1)
Kidney disease (1)
Myocardial ischemia (1)
Pancreatic cancer (1)
Saul-Wilson syndrome (1)

Technology Type

Mass Spectrometry (62)
Shotgun proteomics (29)
Affinity purification coupled with mass spectrometry proteomics (8)
Bottom-up proteomics (7)
Mass spectrometry (6)
Data-independent acquisition (6)
NMR spectroscopy (5)
Data-dependent acquisition (5)
SWATH MS (5)
Gel-based experiment (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
SRM/MRM (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina HiSeq 2500 (1)
Fluorescence imaging (1)
Fluorescence intensity (1)
Mass spectrometry assay (1)
NMR spectroscopy assay (1)
ESI (1)
All-ion fragmentation (1)
Immunopeptidomics (1)
MSE (1)
Top-down proteomics (1)

Instrument Platform

Nuclear Magnetic Resonance (NMR) - (4)
Illumina HiSeq 2500 (3)
Q Exactive (3)
Liquid Chromatography MS - negative - reverse phase (3)
Illumina HiSeq 4000 (2)
Bruker (2)
Liquid Chromatography MS - positive - hilic (2)
454 GS (1)
Agilent NGS Workstation (1)
Illumina NovaSeq 6000 (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
MS Imaging - (1)
Varian (1)

Publication Date

2023 (15)
2022 (14)
2025 (11)
2014 (11)
2026 (11)
2021 (10)
2015 (8)
2012 (8)
2013 (7)
2011 (7)
2018 (5)
2017 (5)
2016 (4)
2010 (4)
2008 (4)
2019 (3)
2024 (2)
2020 (2)
2009 (1)
2005 (1)
2002 (1)

CHEBI ID

CHEBI:16449 (8)
CHEBI:15428 (6)
CHEBI:17234 (6)
CHEBI:18186 (6)
CHEBI:24898 (6)
CHEBI:25017 (6)
CHEBI:25094 (6)
CHEBI:26271 (6)
CHEBI:27266 (6)
CHEBI:15724 (5)
CHEBI:15741 (5)
CHEBI:16335 (5)
CHEBI:17368 (5)
CHEBI:18237 (5)
CHEBI:27570 (5)
CHEBI:28044 (5)
CHEBI:73685 (5)
CHEBI:78320 (5)
CHEBI:15354 (4)
CHEBI:15366 (4)
CHEBI:15891 (4)
CHEBI:16010 (4)
CHEBI:16737 (4)
CHEBI:16750 (4)
CHEBI:16831 (4)
CHEBI:16856 (4)
CHEBI:16914 (4)
CHEBI:16919 (4)
CHEBI:16958 (4)
CHEBI:17084 (4)

Metabolite Name

3-methylhistidine (3)
Adenosine (3)
Alanine (3)
Betaine (3)
Choline (3)
Glucose (3)
Glutamine (3)
Glycine (3)
Histidine (3)
Isoleucine (3)
Leucine (3)
Phenylalanine (3)
Proline (3)
Succinate (3)
Taurine (3)
Threonine (3)
Trimethylamine N-oxide (3)
Tyrosine (3)
Valine (3)
1-linolenoyl-GPC (18:3)* (2)
1-linoleoyl-GPC (18:2) (2)
1-linoleoyl-GPE (18:2)* (2)
1-methyladenine (2)
1-methylhistidine (2)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2)* (2)
1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) (2)
1-palmitoyl-2-linoleoyl-GPE (16:0/18:2) (2)
1-palmitoyl-2-linoleoyl-GPI (16:0/18:2) (2)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (2)
1-palmitoyl-2-oleoyl-GPI (16:0/18:1)* (2)

First Public Date

2022 (1)
2014 (1)

Study type

Transcription profiling by array (25)
RNA-seq of coding RNA (15)
RNA-seq of non coding RNA (4)
ChIP-seq (3)
Methylation profiling by high throughput sequencing (3)
Unknown experiment type (1)
ChIP-chip by array (1)
Genotyping by array (1)
MicroRNA profiling by high throughput sequencing (1)
Other (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
Genotyping by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2022 (229)
2025 (218)
2023 (209)
2024 (200)
2021 (182)
2020 (174)
2019 (122)
2016 (117)
2017 (115)
2018 (101)
2015 (89)
2014 (89)
2013 (62)
2012 (62)
2011 (44)
2026 (42)
2010 (35)
2008 (24)
2009 (23)
2007 (8)
2006 (5)
2003 (5)
2001 (5)
2005 (4)
2002 (3)
1999 (3)
1998 (2)
2004 (1)
2000 (1)

Lab affiliation

The University of Melbourne (10)
Hudson Institute of Medical Research Department of Molecular and Translational Science, Monash University Faculty of Medicine, Nursing and Health Sciences 27-31 Wright Street, Clayton VIC 3168, AUSTRALIA (3)
Cardiac Bioengineering group, QIMR Berghofer Medical Research Institute, Brisbane, QLD, Australia (2)
Centre for Innate Immunity and Infectious diseases, Hudson Institute of Medical Research, Clayton 3168, Australia (2)
-Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Victoria, Australia -Department of Molecular and Translational Science, Monash University, Clayton, Victoria, Australia (1)
1 Centre for Cancer Research, Hudson Institute of Medical Research, Clayton, Australia. Department of Medicine, School of Clinical Sciences, Monash University, Clayton, Australia. 2 Department of Medicine, School of Clinical Sciences, Monash University, Clayton, Australia. 3 Monash Proteomics and Metabolomics Platform, Clinical Proteomics Node, School of Clinical Sciences, Monash University, Clayton, Australia (1)
1 Hudson Institute of Medical Research, Clayton, VIC, Australia, 2 Department of Molecular and Translational Sciences, Monash University, Clayton, VIC, Australia (1)
1- Head, Translational Antigen Discovery Laboratory, Hudson Institute of Medical Research 2- Director, Clinical Proteomics Facility, Department of Medicine, School of Clinical Sciences, Monash University (1)
1-Department of protein Science, KTH Royal Institute of Technology, Stockholm, Sweden 2-Science for Life Laboratory, Stockholm, Sweden (1)
1-Department of protein Science, KTH Royal Institute of Technology, Stockholm, Sweden, 2-Science for Life Laboratory, Stockholm, Sweden (1)
1.School of Life and Environmental Sciences, Faculty of Science, Engineering and Built Environment, Deakin University, Geelong 3216, Australia 2.Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, 3168 Melbourne, Australia 3.Department of Molecular and Translational Science, Monash University, 3168 Melbourne, Australia (1)
BioArch South, Waitati, New Zealand (1)
Biology Department University of Massachusetts Boston Boston, USA (1)
Cambridge Institute for Medical Research, University of Cambridge (1)
Cardiac Bioengineering Lab, QIMR Berghofer Medical Research Institute, Brisbane, QLD, AUS (1)
Cardiac Bioengineering lab, QIMR Berghofer Medical Research Institute, Herston, QLD, AUD (1)
Centre for Cancer Research, Hudson Institute of Medical Research, Clayton, Australia. Department of Medicine, School of Clinical Sciences, Monash University, Clayton, Australia. 2 Department of Medicine, School of Clinical Sciences, Monash University, Clayton, Australia. 3 Monash Proteomics and Metabolomics Platform, Clinical Proteomics Node, School of Clinical Sciences, Monash University, Clayton, Australia (1)
Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Victoria, Australia (1)
Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Victoria, Australia Department of Molecular and Translational Science, Monash University, Clayton, Victoria, Australia (1)
Centre of Innate Immunity and Infectious Disease, Hudson Institute of Medical Research, Clayton, Victoria, 3168, Australia. Department of Molecular and Translational Sciences, Monash University, Clayton, Victoria, 3800, Australia. (1)
Charles Perkins Centre, University of Sydney (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Cancer Research and Molecular Medicine Faculty of Medicine Laboratory Centre, 5th floor. Erling Skjalgssons gt. 1 Norwegian University of Science and Technology NTNU 7006 Trondheim, Norway Tel: +47 72573076; Fax: +47 72576400 Cell. phone: +47 91825455 (1)
Department of Chemistry & Chemical Biology, Northeastern University (1)
Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States (1)
Department of Chemistry, Biological Sciences, Microbiolgy and Immunology at Vanderbilt University (1)
Department of Clinical Pharmacy, University of Michigan College of Pharmacy (1)
Department of Pathology, University of Cambridge, Cambridge, UK (1)
Director Sanford Children’s Health Research Center Sanford Burnham Prebys Medical Discovery Institute 10901 N Torrey Pines Rd, La Jolla, CA 92037 (1)
Director and CEO, Hudson Institute of Medical Research Head, Department of Molecular and Translational Science, Monash University Faculty of Medicine, Nursing and Health Sciences 27-31 Wright Street, Clayton VIC 3168, AUSTRALIA (1)

Tags

xref:PubMed:25267065 (1)
xref:EuropePMC:PMC10019288 (1)

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Proteomic analysis of the secretome of chondrocyte-like cells in Saul-Wilson syndrome

Saul-Wilson syndrome (SWS) is a rare skeletal dysplasia often presents with features such as a distinct facial phenotype, cataracts, short stature, clubfoot deformities, and microcephaly. We have previously identified that the causative mutation in SWS is a heterozygous, dominant variant (p.G516R) i...

ORGANISM(S): Homo sapiens (Human)

2023-03-11 | PXD036151 | Pride

Micelle-Coated, Hierarchically Structured Nanofibers with Dual-Release Capability for Accelerated Wound Healing and Infection Control.

Not available

S-EPMC6347427 | biostudies-literature

An experimental and computational study of CO₂ adsorption in the sodalite-type M-BTT (M = Cr, Mn, Fe, Cu) metal-organic frameworks featuring open metal sites.

Not available

S-EPMC5969499 | biostudies-literature

Human Health Benefits from Fish Consumption vs. Risks from Inhalation Exposures Associated with Contaminated Sediment Remediation: Dredging of the Hudson River.

Not available

S-EPMC6957280 | biostudies-literature

Labrador Sea freshening at 8.5 ka BP caused by Hudson Bay Ice Saddle collapse.

Not available

S-EPMC6362222 | biostudies-literature

Gene expression of CD66 expressing cells in cervical precancer cell line

Gene Expression profiles of sorted CD66High and CD66Low cells were generated from CIN612-9E cells grown in Emedia. We have analyzed the gene expression pattern of CD66High and CD66Low cells from CIN612 9E. These cells are derived from a cervical precancer lesion (M. Bedell, J. Hudson, T. Golub et al...

ORGANISM(S): Homo sapiens

2014-09-30 | GSE59322 | GEO

FarmHub_Transect

Soil sample transect of Hudson Valley Farm Hub, NY, USA

PRJEB52998 | ENA

The cdr2(+) gene encodes a regulator of G2/M progression and cytokinesis in Schizosaccharomyces pombe.

Not available

S-EPMC25645 | biostudies-literature

Assessing polar bear (Ursus maritimus) population structure in the Hudson Bay region using SNPs.

Not available

S-EPMC5167041 | biostudies-literature

Alpha kinase 3 signaling at the M-band maintains sarcomere integrity and proteostasis in striated muscle.