Hydrogen peroxide (h2o2)

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Unknown (3229)
Transcriptomics (530)
Genomics (230)
Proteomics (97)
Metabolomics (9)
Other (4)
Models (1)
Methylation profiling (1)

Organisms

Homo sapiens (99)
Arabidopsis thaliana (82)
Saccharomyces cerevisiae (53)
Mus musculus (53)
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Escherichia coli (16)
Salmonella enterica subsp. enterica serovar Typhimurium (14)
Rattus norvegicus (10)
Saccharomyces cerevisiae S288C (10)
Triticum aestivum (7)
Oryza sativa (6)
Pseudomonas aeruginosa (6)
Bacillus subtilis (6)
Candida albicans (6)
Streptococcus pneumoniae (6)
Yersinia pestis (4)
Drosophila melanogaster (4)
Moraxella catarrhalis (3)
Vitis vinifera (3)
Mycobacterium tuberculosis (3)
Staphylococcus aureus (3)
Streptococcus mutans UA159 (2)
Bacillus cereus ATCC 14579 (2)
Salmonella enterica subsp. enterica serovar Typhi (2)
Lepeophtheirus salmonis (2)
Ectocarpus siliculosus (2)
Oryza sativa Indica Group (2)
Entamoeba histolytica (2)
Bacillus anthracis (2)
Armoracia rusticana (1)

Organisms

Homo sapiens (38)
Arabidopsis thaliana (24)
Mus musculus (18)
Saccharomyces cerevisiae (7)
Nitratidesulfovibrio vulgaris str. Hildenborough (4)
Saccharomyces cerevisiae S288C (4)
Streptococcus pneumoniae (4)
Nannochloropsis oceanica (3)
Escherichia coli (3)
Leishmania donovani (2)
Nicotiana tabacum (2)
Candida albicans (2)
Sus scrofa (2)
Rattus norvegicus (2)
Streptococcus parasanguinis FW213 (1)
Listeria monocytogenes serotype 4b str. F2365 (1)
Streptococcus pneumoniae R6 (1)
Elizabethkingia anophelis NUHP1 (1)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (1)
Pseudoalteromonas sp. A2 (1)
Halobacterium salinarum NRC-1 (1)
Microcystis aeruginosa PCC 7806 (1)
Vibrio cholerae O1 biovar El Tor str. N16961 (1)
Streptococcus sanguinis (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (1)
Rhodosporidiobolus odoratus (1)
Cereibacter sphaeroides (1)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (1)
Haloferax volcanii DS2 (1)
Pyrococcus furiosus DSM 3638 (1)

Repository

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pride (70)
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Tissue

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Liver (1)
Lung (1)
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Rosette (1)

Disease

Not Available (3)
Acute promyelocytic leukemia (1)
Normal (1)
Autoimmune vasculitis (1)
Breast cancer (1)
Calcium oxalate nephrolithiasis (1)
Disease free (1)
Medulloblastoma (1)
Osteoarthritis (1)
Schizophrenia (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (70)
Shotgun proteomics (32)
Affinity purification coupled with mass spectrometry proteomics (15)
Bottom-up proteomics (11)
Data-dependent acquisition (8)
Mass spectrometry (6)
Gel-based experiment (4)
Mass spectrometry assay (3)
Data-independent acquisition (3)
SRM/MRM (3)
MSE (2)
SWATH MS (2)
Top-down proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
HDMSE (1)
RNA mass spectrometry (1)

Instrument Platform

Illumina HiSeq 2000 (6)
Illumina HiSeq 4000 (5)
AB SOLiD 4 System (4)
Illumina HiSeq 2500 (4)
NextSeq 500 (4)
Vortex (3)
Instrument (3)
Q Exactive (3)
Q Exactive HF (3)
Scanning hardware (2)
LTQ Orbitrap Elite (2)
Quiagen Mini prep kit (1)
Axon GenePix 4000A scanning hardware (1)
Dell PowerEdge R820 (1)
ScanArray 4000 [PerkinElmer] (1)
ScanArray Lite [PerkinElmer] (1)
ScanArray [PerkinElmer] (1)
GenePix 4000A [Axon Instruments] (1)
Illumina Genome Analyzer IIx (1)
Axon- GenePix4000B (1)
418 [Affymetrix] (1)
Illumina NovaSeq X (1)
Ion Torrent PGM (1)
NA (1)
DNBSEQ-G400 (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
Illumina NovaSeq 6000 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)

Publication Date

2010 (77)
2012 (62)
2013 (54)
2014 (49)
2015 (47)
2016 (36)
2011 (36)
2008 (34)
2009 (32)
2025 (22)
2023 (22)
2024 (21)
2021 (20)
2026 (19)
2022 (19)
2019 (19)
2007 (17)
2005 (16)
2018 (15)
2017 (15)
2020 (12)
2006 (8)
2004 (5)
2003 (3)

UNIPROT ID/AC

1FEH1_WHEAT (2)
4565.Traes_1AL_1205BBAE8.1 (2)
4565.Traes_1AL_1DC9BD199.1 (2)
4565.Traes_1AL_2EF38544E.1 (2)
4565.Traes_1AL_3B7E92634.1 (2)
4565.Traes_1AL_968B97E50.1 (2)
4565.Traes_1AL_B3E4C9B23.1 (2)
4565.Traes_1AL_BB4758A6F.1 (2)
4565.Traes_1AL_D789B5634.1 (2)
4565.Traes_1AL_D8FE82B94.1 (2)
4565.Traes_1AS_54A7FBBFC.1 (2)
4565.Traes_1AS_6AC8C20AE.1 (2)
4565.Traes_1AS_7EB01951F.1 (2)
4565.Traes_1AS_E14F4EB86.1 (2)
4565.Traes_1BL_07C296E67.1 (2)
4565.Traes_1BL_12E12ED7C.1 (2)
4565.Traes_1BL_212EC3A2C.1 (2)
4565.Traes_1BL_23485C382.2 (2)
4565.Traes_1BL_28FC38E43.1 (2)
4565.Traes_1BL_38CAFCA561.1 (2)
4565.Traes_1BL_38FE8B094.2 (2)
4565.Traes_1BL_55033DAE8.2 (2)
4565.Traes_1BL_66D2E2865.2 (2)
4565.Traes_1BL_6837B7A81.2 (2)
4565.Traes_1BL_7B1831D79.2 (2)
4565.Traes_1BL_8028DEB2B.1 (2)
4565.Traes_1BL_8601EC2E0.1 (2)
P00433 (1)
P15232 (1)
P15233 (1)

CHEBI ID

CHEBI:16335 (4)
CHEBI:16856 (3)
CHEBI:15676 (3)
CHEBI:17858 (3)
CHEBI:7916 (3)
CHEBI:16680 (3)
CHEBI:15422 (3)
CHEBI:16761 (3)
CHEBI:16027 (3)
CHEBI:78682 (3)
CHEBI:16708 (3)
CHEBI:16015 (3)
CHEBI:16704 (3)
CHEBI:15741 (3)
CHEBI:44897 (3)
CHEBI:14314 (3)
CHEBI:18107 (3)
CHEBI:16196 (3)
CHEBI:17596 (3)
CHEBI:15756 (3)
CHEBI:30769 (3)
CHEBI:16024 (2)
CHEBI:28757 (2)
CHEBI:48928 (2)
CHEBI:18009 (2)
CHEBI:16204 (2)
CHEBI:17677 (2)
CHEBI:48153 (2)
CHEBI:16240 (1)
CHEBI:15377 (1)

Metabolite Name

Adenosine (3)
L-Alanine (2)
ATP (2)
AMP (2)
CDP-ethanolamine (2)
ADP (2)
L-Proline (2)
Ergothioneine (2)
L-Lysine (2)
L-Arginine (2)
L-Asparagine (2)
L-Histidine (2)
Oleic acid (2)
L-Glutamine (2)
D-Mannose (2)
ADP-ribose (2)
Adenine (2)
Uridine (2)
Glycerophosphocholine (2)
L-Methionine (2)
L-Tyrosine (2)
L-Phenylalanine (2)
C00356 (1)
C00024 (1)
C00016 (1)
C00010 (1)
C00005 (1)
C01613 (1)
C00004 (1)
C01204 (1)

First Public Date

2014 (54)
2024 (22)
2025 (21)
2023 (16)
2022 (16)
2026 (13)
2021 (13)
2018 (10)
2020 (9)
2019 (8)
2016 (8)
2017 (5)
2015 (5)
2013 (5)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA (2)
University of Rochester Biology Department (2)
1McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX, USA (1)
Abiel Roche-Lima, MSc., PhD. Assistant Professor Director, Integrated Informatics Services core IIS-RCMI University of Puerto Rico Medical Science Campus RCMI Program PO Box 365067 San Juan, PR. 00936-5067 Phone: +1 787 758-2525 x 2194 (1)
Associate Professor Iowa Institute for Oral Health Research Department of Periodontics University of Iowa College of Dentistry and Dental Clinics N423 Dental Science Building 801 Newton Rd, Iowa City, IA 52242 (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Biomedical Research Center, Slovak Academy of Sciences (1)
CAS（Chinese Academy of Sciences） (1)
CENTD, Instituto Butantan (1)
CNRS UMR3348, Institut Curie, Bâtiment 110, Centre Universitaire, 91405 Orsay, France. Phone: 33-1-69863016; Fax: 33-1-69869429 (1)
Cardiovascular Medicine Division, Brigham and Women’s Hospital, Boston, MA, USA (1)
Cell Biology Department, Harvard Medical School (1)
Center for Genomics and Systems Biology Department of Biology New York University, New York, NY, 10003, USA (1)
Center for Molecular Medicine, Molecular Cancer Research, University Medical Center Utrecht, Universiteitsweg 100, 3584CG, Utrecht, The Netherlands. (1)
Complutense University of Madrid (1)
Department of Analytical Biochemistry, Groningen Research Institute of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9713 AV Groningen, The Netherlands (1)
Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Chiba, Japan. (1)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg (1)
Department of Biochemistry, Vanderbilt University, USA (1)
Department of Biological Chemistry The Johns Hopkins School of Medicine Baltimore, MD, 21205, USA (1)
Department of Biology - New York University Center for Genomics and Systems Biology New York, NY , USA (1)
Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX (1)
Department of Chemistry, Biochemistry and Pharmaceutical Sciences, University of Bern, 3012 Bern, Switzerland (1)
Department of Chemistry, Biology and Biotechnology, University of Perugia, Italy (1)
Department of Chemistry, Johns Hopkins University (1)
Department of Chemistry, Southern University of Science and Technology (1)
Department of Life Sciences, University of Siena, Italy (1)
Department of Molecular Biology and Biotechnology, Firth Court, University of Sheffield, Sheffield, UK (1)
Department of Plant Biotechnology and Bioinformatics, Ghent University, Gent, Belgium VIB-Center for Plant Systems Biology, Gent, Belgium (1)
Department of Plant Biotechnology and Bioinformatics, Oxidative Stress Signalling lab, Ghent University (1)

IsPrivate

False (1)

Classification

bacteria (25)
fungi (5)
protozoa (2)

Modification

-17.026549 (1)
15.994915 (1)
2x(15)N labeled L-lysine (1)
3-dipalmitoyl-glycerol)cysteine (1)
42.010565 (1)
47.984744 (1)
4x(15)N labeled L-arginine (1)
788.725776 (1)

Study type

Transcription profiling by array (311)
RNA-seq of coding RNA (42)
Unknown experiment type (28)
ChIP-seq (14)
ChIP-chip by tiling array (6)
ChIP-chip by array (6)
Other (5)
RNA-seq of non coding RNA (5)
Transcription profiling by tiling array (4)
RNA-seq of total RNA (3)
Cell line - High-throughput sequencing (2)
Transcription profiling by RT-PCR (2)
Comparative genomic hybridization by array (2)
RIP-seq (2)
RIP-chip by array (1)
High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
Genotyping by array (1)
MicroRNA profiling by high throughput sequencing (1)
Hi-C (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (419)
2025 (393)
2021 (377)
2023 (356)
2024 (352)
2020 (291)
2019 (227)
2018 (178)
2017 (160)
2016 (159)
2015 (142)
2014 (126)
2013 (95)
2010 (85)
2012 (67)
2026 (62)
2008 (46)
2011 (38)
2009 (31)
2007 (24)
2005 (20)
2006 (10)
2004 (4)
2003 (4)
2002 (4)
1999 (1)
1998 (1)

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Injury-dependent hydrogen peroxide oxidation of IKK-alpha regulates keratinocyte migration through induction of EGF

Hydrogen peroxide is known to promote skin keratinocyte migration, although the mechanism of action is unclear. In an attempt to identify signaling pathways regulated by hydrogen peroxide in the skin, 3 day post fertilized (dpf) zebrafish larvae (nacre strain) were treated with 3mM hydrogen peroxide...

ORGANISM(S): Danio rerio

2016-02-22 | E-GEOD-75728 | biostudies-arrayexpress

Proteome wide analysis of hydrogen peroxide-induced protein carbonylation in Arabidopsis thaliana

Protein carbonylation is a non-enzymatic and irreversible post-translational modification that occurs naturally in living organisms under the direct or indirect effect of reactive oxygen species (ROS). In this study, we analyzed proteins that are responsive to carbonylation by exogenous hydrogen per...

ORGANISM(S): Arabidopsis Thaliana (ncbitaxon:3702)

2022-10-17 | MSV000090540 | MassIVE

Hydrogen peroxide Stress in Desulfovibrio vulgaris Hildenborough (REPLACED BY GSE21441)

Using data from microarray experiments, we investigated the effects of excess hydrogen peroxide on D. vulgaris. Keywords: stress response, time course Comparison of wild type and deletion mutant cells treated with 1 mM H2O2 to untreated cells at times of 0 and 120 min. See also Series GSE4447 (http...

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2011-10-03 | E-GEOD-14345 | biostudies-arrayexpress

Hydrogen peroxide Stress in Desulfovibrio vulgaris Hildenborough (REPLACED BY GSE21438)

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2011-10-03 | E-GEOD-14355 | biostudies-arrayexpress

Transcription profiling of Pseudomonas aeruginosa treated with hydrogen peroxide

Background: Pseudomonas aeruginosa, a pathogen infecting those with cystic fibrosis, encounters toxicity from phagocyte-derived reactive oxidants including hydrogen peroxide during active infection. P. aeruginosa responds with adaptive and protective strategies against these toxic species to effect...

ORGANISM(S): Pseudomonas aeruginosa

2007-07-19 | E-GEOD-3090 | biostudies-arrayexpress

Identification of Gene Products Involved in the Oxidative Stress Response of Moraxella catarrhalis: Evaluation of OxyR dependent Genes

Series of DNA microarrays (4) comparing the M. catarrhalis strain 035E and M. catarrhalis oxyR mutant response to 50 mM hydrogen peroxide. Wild-type cells and oxyR mutant cells were exposed to 50 mM hydrogen peroxide for 15 minutes. RNA was extracted and DNA microarray analysis performed. 4 biologic...

ORGANISM(S): Moraxella catarrhalis

2010-12-07 | E-GEOD-24351 | biostudies-arrayexpress

Hydrogen peroxide Stress in Desulfovibrio vulgaris Hildenborough

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2011-07-04 | E-GEOD-21438 | biostudies-arrayexpress

Transcriptome analysis of wt and PerR mutant Group A streptococcus (GAS), strain 003Sm in THB medium, with and without hydrogen peroxide

Transcriptome analysis of of wt and PerR mutant Group A streptococcus strain 003Sm grown in the presence or absence of hydrogen peroxide, at early and late log

ORGANISM(S): Streptococcus pyogenes

2011-11-18 | E-MTAB-646 | biostudies-arrayexpress

Transcription profiling of Arabidopsis under hydrogen peroxide stress overexpressing Zat12

In this experiment we tested the transcriptome of transgenic Arabidopsis seedlings (5-day-old) constitutively expressing the zinc-finger protein Zat12 (At5g59820) under the control of the 35S-CaMV promoter (Zat12). The transcriptome of these seedlings was compared to that of wild type seedlings grow...

ORGANISM(S): Arabidopsis thaliana

2008-06-13 | E-GEOD-5530 | biostudies-arrayexpress

Transcriptional profiling of E. coli after addition of peroxynitrite or hydrogen peroxide to aerobically growing cells

Peroxynitrite is formed in macrophages by the diffusion-limited reaction of superoxide and nitric oxide. This highly reactive species is capable of causing both oxidative and nitrosative stress in Escherichia coli. Previous studies have focused on the reactions of peroxynitrite with specific protein...

ORGANISM(S): Escherichia coli

2010-05-24 | E-GEOD-19370 | biostudies-arrayexpress

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