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Proteomicshydroxyproline-containing proteins of rice
Identification of hydroxyproline-containing proteins and hydroxylation of proline in rice
ORGANISM(S): Oryza Sativa 
2020-06-09 | PXD017798 |
TranscriptomicsGlobal expression profiling of Physcomitrella patens Hydroxyproline O-arabinosylatransferases (hpat) mutants
Hydroxyproline O-arabinosylatransferases (HPATs) are members of a small, deeply conserved family of plant-specific glycosyltransferases that add arabinose sugars to diverse proteins such as cell wall-associated extensins and small signaling peptides. We used a custom designed NimbleGene microarray b...
ORGANISM(S): Physcomitrella patens 
2015-11-18 | E-MTAB-3638 | biostudies-arrayexpress
ProteomicsIdentification of 4-Hydroxyproline at the Xaa Position in Collagen by Mass Spectrometry
Collagen has a triple helix form, structured by a [-Gly-Xaa-Yaa-] repetition, where Xaa and Yaa are amino acids. This repeating unit can be post-translationally modified by enzymes, where proline is often hydroxylated into hydroxyproline (Hyp). Two Hyp isomers occur in collagen: 4-hydroxyproline (4H...
ORGANISM(S): Homo sapiens (Human) 
2019-03-20 | PXD011784 | Pride
Ab initio Colorectal liver metastasis Mass spectrometry Collagen Ptm Liver Etd Hydroxyproline Posttranslational modification Orbitrap fusion 
ProteomicsDetermination of allergen levels, isoforms and their hydroxyproline modifications among peanut genotypes by mass spectrometry
The recently published genome of peanut enables detailed molecular description of seed storage proteins, particularly allergens, which make up the peanut seed proteome. A detailed description of the allergenic proteome was produced using peanuts of different genetic backgrounds to increase the cover...
ORGANISM(S): Arachis hypogaea (Peanut) 
2022-08-11 | PXD028086 | Pride
Hydroxyproline Food allergy Arachis hypogaea Mass spectrometry Peanut 
GenomicsEffect of Interferon Gamma and Hydroxyproline on Gene Expression in THP-1 Cells
Effect of Interferon Gamma and Hydroxyproline on Gene Expression in THP-1 Cells
PRJNA955675 | ENA
TranscriptomicsTranscriptome analysis of Pseudomonas aeruginosa PAO1 Response to Hydroxyproline
Hydroxy-L-proline (L-Hyp) mainly exists in animal collagens through post-translational modification on peptidyl proline. Utilization of L-Hyp as carbon and nitrogen sources in bacteria including P. aeruginosa requires conversion of L-Hyp to D-Hyp followed by the D-Hyp dehydrogenase pathway. However,...
ORGANISM(S): Pseudomonas aeruginosa 
2015-09-22 | E-GEOD-73244 | biostudies-arrayexpress
TranscriptomicsEffect of Interferon Gamma and Hydroxyproline on Gene Expression in THP-1 Cells
Hydroxyproline (trans-4-Hydroxy-L-proline) is an abundant amino acid in mammalian tissue, yet little is known about how its prescence effects gene expression. This study aimed to analyze the effects of hydroxyproline on gene expression in THP-1 cells stimulated with IFN-γ, using RNA-seq.
ORGANISM(S): Homo sapiens 
2023-05-15 | GSE229710 | GEO
TranscriptomicsNovel Regulators of Fgf23 Expression and Mineralization in Hyp Bone
We used gene array analysis of cortical bone to identify Phex-dependent gene transcripts regulating Fgf23 production and mineralization in Hyp mice. We discovered that activation of Fgf receptor- and Wnt-pathways contribute to increased Ffg23 gene transcription in Hyp bone. We found evidence in Hyp ...
ORGANISM(S): Mus musculus 
2009-12-21 | E-GEOD-14242 | biostudies-arrayexpress
TranscriptomicsExpression analysis of genes in the legume endosymbiont Sinorhizobium meliloti with reference to Hydroxyproline Catabolism
Hydroxyproline in decaying organic matter and root exudates and is a source of carbon and nitrogen to soil-dwelling microorganisms. A bacterial pathway for hydroxyproline catabolism was elucidated over 30 years ago however genes and gene function relationships were not established. In that pathway, ...
ORGANISM(S): Sinorhizobium meliloti 
2012-07-17 | GSE38087 | GEO
ProteomicsThe dipeptide prolyl-hydroxyproline promotes cellular homeostasis and lamellipodia-driven motility via active ?1-integrin in adult tendon cells
Collagen-derived hydroxyproline-containing peptides show a variety of biological properties in cells. However, no comprehensive study has yet explored the functional links between Hyp-containing peptides and cellular behavior. Here, we show that the dipeptide prolyl-hydroxyproline (Pro–Hyp) exhibits...
ORGANISM(S): Mus musculus (Mouse) 
2021-05-27 | PXD023176 | Pride
Collagen-derived peptide  proline-hydroxyproline  adult tendon cells  extracellular matrix  scleraxis  cell motility  extracellular signal-regulated kinase 
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