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MetabolomicsA multi-omics approach to unravel the interaction between heat and drought stress in the Arabidopsis thaliana holobiont
The impact of combined heat and drought stress was investigated in Arabidopsis thaliana and compared to individual stresses to reveal additive effects and interactions. A combination of plant metabolomics and root and rhizosphere bacterial metabarcoding were used to unravel effects at the plant holo...
2024-12-16 | MTBLS7365 | MetaboLights
MetabolomicsMetabolic fingerprinting reveals roles of Arabidopsis thaliana BGLU1, BGLU3, and BGLU4 in glycosylation of various flavonoids

Flavonoids are specialized metabolites that play important roles in plants, including interactions with the environment. The high structural diversity of this metabolite group is largely due to enzyme-mediated modifications of flavonoid core skeletons. In particular, glycosylation with different ...

2025-02-25 | MTBLS1965 | MetaboLights
MetabolomicsDecreased abundance of type III secretion systeminducing signals in Arabidopsis mkp1 enhances resistance against Pseudomonas syringae
Genes encoding the virulence-promoting type III secretion system (T3SS) in phytopathogenic bacteria are induced at the start of infection, indicating that recognition of signals from the host plant initiates this response. However, the precise nature of these signals and whether their concentrations...
2014-06-24 | MTBLS95 | MetaboLights
TranscriptomicsArabidopsis thaliana and Arabidopsis lyrata degradomes
Deep sequencing of the 5' ends of uncapped, polyA-enriched mRNA from two biological replicate samples from Arabidopsis thaliana inflorescences, as well as two biological replicates of Arabidopsis lyrata inflorescences. These data were used to experimentally identify sliced microRNA targets from the...
ORGANISM(S): Arabidopsis thaliana 
2010-04-22 | E-GEOD-20451 | biostudies-arrayexpress
TranscriptomicsGenomic dna hybridizations of 8 winter annual accessions of Arabidopsis thaliana
These data provide a basis for the detection of sequence based polymorphisms between 10 Spring annual accessions of Arabidopsis thaliana. The experimental data provides an initial characterization of differences among the accessions, as well as a means for improving gene expression studies with the...
ORGANISM(S): Arabidopsis thaliana 
2012-03-12 | E-GEOD-27551 | biostudies-arrayexpress
TranscriptomicsGenomic dna hybridizations of 10 Spring annual accessions of Arabidopsis thaliana
These data provide a basis for the detection of sequence based polymorphisms between 10 Spring annual accessions of Arabidopsis thaliana. The experimental data provides an initial characterization of differences among the accessions, as well as a means for improving gene expression studies with the...
ORGANISM(S): Arabidopsis thaliana 
2012-03-12 | E-GEOD-27549 | biostudies-arrayexpress
TranscriptomicscRNA hybridizations of 18 accessions of Arabidopsis thaliana under well-watered and mild soil drying
These data provide a basis for exploration of gene expression differences between physiologically diverse accessions of Arabidopsis thaliana. Recent studies have documented remarkable genetic variation among Arabidopsis thaliana accessions collected from diverse habitats and across its geographical ...
ORGANISM(S): Arabidopsis thaliana 
2012-03-12 | E-GEOD-27550 | biostudies-arrayexpress
MetabolomicsMetabolomic Responses of Arabidopsis Suspension Cells to Bicarbonate under Light and Dark Conditions
Global CO2 level presently recorded at 400 ppm is expected to reach 550 ppm in 2050, an increment likely to impact plant growth and productivity. Using targeted LC-MS and GC-MS platforms we quantified 229 and 29 metabolites, respectively in a time-course study to reveal short-term responses to diffe...
2017-04-25 | MTBLS311 | MetaboLights
TranscriptomicscRNA hybridizations of 10 Spring annual accessions of Arabidopsis thaliana under well-watered and mild soil drying
These data provide a basis for exploration of gene expression differences between physiologically diverse Spring annual accessions of Arabidopsis thaliana. Recent studies have documented remarkable genetic variation among Arabidopsis thaliana accessions collected from diverse habitats and across its...
ORGANISM(S): Arabidopsis thaliana 
2012-03-12 | E-GEOD-27548 | biostudies-arrayexpress
ProteomicsAnalysis of protein phosphorylation in response to the ATP treatment in Arabidopsis thaliana
The project intended to reveal protein phosphorylation patterns in Arabidopsis thaliana in response to ATP. For this purpose, Arabidopsis thaliana plants, including WT, ATP receptor mutants (p2k1, p2k2, and double mutant p2k1/p2k2), and P2K1 overexpression plants, were treated with ATP or buffer (as...
ORGANISM(S): Arabidopsis Thaliana (ncbitaxon:3702) 
MSV000095888 | MassIVE
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