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TranscriptomicsTranscriptome response to different carbon sources in Acetobacter aceti
Acetic acid bacteria are obligately aerobic alphaproteobacteria that have a unique ability to incompletely oxidize various alcohols and sugars to organic acids. The ability of these bacteria to incompletely oxidize ethanol to acetate has been historically utilized for vinegar production. The mechani...
ORGANISM(S): Acetobacter aceti NBRC 14818 
2011-01-17 | E-GEOD-24361 | biostudies-arrayexpress
TranscriptomicsGene expression profile of pellicle cells of Pseudomonas aeruginosa
To investigate the gene expression profile of pellicle cells of Pseudomonas aeruginosa, microarray analysis was performed. Transcriptome profiles of pellicle cells and planktonic cells grown in LB medium were determined by Affymetrix GeneChip. Gene expression pattern that is specific to pellicle cel...
ORGANISM(S): Pseudomonas aeruginosa 
2011-03-31 | E-GEOD-24784 | biostudies-arrayexpress
TranscriptomicsTranscriptome response to nitric oxide in Pseudomonas aeruginosa
DNA microarray analysis was employed to investigate the transcriptome response to nitric oxide in Pseudomonas aeruginosa. We focused on the role played by the nitric oxide-response regulators DNR and FhpR and an oxygen-response regulator ANR in the response. The transcriptome profiles of the P. aeru...
ORGANISM(S): Pseudomonas aeruginosa 
2014-12-08 | E-GEOD-58862 | biostudies-arrayexpress
TranscriptomicsEffect of glyoxylate pathway deficiency on transcriptome profile of Acetobacter aceti
Trascriptome profiles in the cells of A. aceti wild-type strain and its isogenic aceA glcB mutant during growth in medium contaning ethanol and glucose was determined by NimbleGen Eukaryotic Expression array (4x72K). Acetobacter aceti NBRC14818 and its isogenic aceA glcB mutant were cultivated in me...
ORGANISM(S): Acetobacter aceti NBRC 14818 
2012-11-30 | E-GEOD-38524 | biostudies-arrayexpress
Genomicsena-DATASET-UT-Ped-15-12-2014-06:44:14:477-357 - samples
Whole-exome sequencing in 16 RMS cases Whole-transcriptome sequencing in 8 RMS cases
EGAD00001001105 | EGA
GenomicsIntegrated genetic and epigenetic analysis defines novel molecular clusters in rhabdomyosarcoma
Rhabdomyosarcoma (RMS) is the most common soft tissue sarcoma in childhood. To unravel the genetic/epigenetic basis of RMS, we studied 60 RMS cases using whole exome/transcriptome sequencing, copy number (CN) profiling, and DNA methylome analysis. Based on DNA methylation patterns, RMS was clustered...
EGAS00001000884 | EGA
GenomicsRMS_Infinium450K
Infinium 450K in Rhabdomyosarcoma
EGAD00010000897 | EGA
GenomicsDepartment of Pediatrics, The University of Tokyo Data Access Committee
Data Access Committee EGAC00001000207
EGAC00001000207 | EGA
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