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TranscriptomicsTranscriptome profiling in reciprocal hybrids and tetraploids constructed from subspecies japonica and indica of Asian rice (Oryza sativa L.)
Hybrids and allopolyploids typically exhibit radically altered gene expression patterns relative to their parents, a phenomenon termed “transcriptomic shock.” To distinguish the effects of hybridization from polyploidization on coregulation of divergent alleles, we analyzed expression of parenta...
ORGANISM(S): Oryza sativa 
2014-02-18 | E-MTAB-4271 | biostudies-arrayexpress
TranscriptomicsTranscriptome and methylome interactions in rice hybrids
This research reports genome-wide measurements of genetic and epigenetic patterns of inheritance through an integrative analysis of BS-seq, RNA-seq, and siRNA-seq data in two inbred parents of the Nipponbare (NPB) and Indica (93-11) variety of rice and their hybrid offspring. We generated integrativ...
ORGANISM(S): Oryza sativa Indica Group 
2012-07-10 | E-GEOD-38480 | biostudies-arrayexpress
ProteomicsNatural variations of SLG1 confer high-temperature tolerance in indica rice
Natural variations of SLG1 confer high-temperature tolerance in indica rice
ORGANISM(S): Oryza Sativa 
2020-09-26 | PXD021698 |
UnknownCharacterisation of Indica Special Protein (ISP), a marker protein for the differentiation of Oryza sativa subspecies indica and japonica.
Not available
S-EPMC4057675 | biostudies-literature
GenomicsSalmonella enterica subsp. indica str. ATCC BAA-1576
Subspecies VI strain for comparative analysis
PRJNA28785 | ENA
UnknownNatural variation in OsMYB8 confers diurnal floret opening time divergence between indica and japonica subspecies.
Not available
S-EPMC10937712 | biostudies-literature
UnknownConfirmation of Rickettsia conorii Subspecies indica Infection by Next-Generation Sequencing, Shandong, China.
Not available
S-EPMC8462315 | biostudies-literature
GenomicsOryza sativa Indica Group
Oryza sativa Indica Group Genome sequencing
PRJNA208775 | ENA
UnknownDecoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
Not available
S-EPMC4789791 | biostudies-literature
GenomicsRickettsia conorii subsp. indica ITTR
Rickettsia conorii subsp. indica ITTR Genome sequencing and assembly
PRJNA89511 | ENA
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