Industrial microbiology

Show results for

Unknown (6117)
Transcriptomics (179)
Genomics (95)
Proteomics (21)
Models (6)
Metabolomics (4)

Organisms

Streptomyces coelicolor (10)
Homo sapiens (10)
Medicago truncatula (7)
Mus musculus (7)
Escherichia coli (7)
Neisseria meningitidis (6)
Halobacterium salinarum (5)
Bacillus cereus (5)
Salmonella enterica subsp. enterica serovar Typhimurium (5)
Saccharomyces cerevisiae (5)
Mycobacterium tuberculosis (4)
Moraxella catarrhalis BBH18 (3)
Neisseria gonorrhoeae (3)
Helicobacter pylori (3)
Francisella tularensis (3)
Streptomyces venezuelae (3)
Mucor circinelloides (3)
Pseudomonas aeruginosa (3)
Arabidopsis thaliana (3)
Moraxella catarrhalis (2)
Rhodospirillum rubrum (2)
Herminiimonas arsenicoxydans (2)
Mycobacterium avium subsp. paratuberculosis (2)
Treponema denticola (2)
Brucella abortus (2)
Salmonella enterica subsp. enterica serovar Typhi (2)
Aggregatibacter actinomycetemcomitans (2)
Actinobacillus pleuropneumoniae (2)
Bordetella pertussis (2)
Lactococcus cremoris subsp. cremoris MG1363 (1)

Organisms

Saccharomyces cerevisiae (3)
Pseudomonas citronellolis (2)
bioreactor sludge metagenome (2)
Pseudomonas putida (2)
activated sludge metagenome (2)
Aspergillus niger (2)
Geobacter metallireducens GS-15 (1)
Corynebacterium glutamicum R (1)
rock porewater metagenome (1)
Rhodococcus jostii (1)
Geobacillus sp. GHH01 (1)
Kitasatospora sp. NEAU-CNBT7 (1)
Clostridium taeniosporum (1)
Metschnikowia sp. SML2-22 (1)
Sugiyamaella sp. LJX2-8 (1)
Ogataea parapolymorpha (1)
Komagataeibacter oboediens 174Bp2 (1)
Komagataeibacter europaeus 5P3 (1)
Komagataeibacter europaeus LMG 18494 (1)
Acetobacter pasteurianus 3P3 (1)
Rhodococcus sp. PD04 (1)
Desulfuromonas sp. AOP6 (1)
Weissella kandleri (1)
Geoanaerobacter pelophilus (1)
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 (1)
Sulfurovum (1)
Saccharomycotina sp. YJ-2025a (1)
Kurtzmanomyces sp. YL-2025a (1)
Saccharomycotina sp. YJ-2025b (1)
Trigonosporomyces sp. YL-2025a (1)

Repository

biostudies-arrayexpress (187)
ENA (87)
pride (19)
BioModels (6)
MetaboLights (4)
MassIVE (2)
geo (1)

Tissue

Cell culture (1)
Cell suspension culture (1)
Corm (1)
Epithelial cell (1)
Flower (1)
Fruit body (1)
Leaf (1)
Mycelium (1)
Primordium (1)

Disease

IRAK-4 Q293X mutation (1)

Technology Type

Mass Spectrometry (19)
Shotgun proteomics (8)
Bottom-up proteomics (7)
Mass spectrometry (4)
Data-dependent acquisition (3)
HDMSE (2)
Data-independent acquisition (1)
MSE (1)
SRM/MRM (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (16)
Illumina HiSeq 2500 (12)
Illumina NovaSeq 6000 (7)
Illumina MiSeq (4)
Illumina Genome Analyzer II (3)
NextSeq 500 (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Illumina Genome Analyzer (1)
GenePix Professional 4200A [Axon Instruments] (1)
Other (1)
Ion Torrent Proton (1)
Illumina HiSeq 1500 (1)
LTQ (1)
Xevo G2 Q-Tof (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2010 (25)
2013 (24)
2012 (21)
2011 (18)
2015 (13)
2014 (13)
2009 (11)
2016 (10)
2025 (9)
2005 (9)
2021 (9)
2018 (9)
2022 (8)
2026 (6)
2020 (6)
2024 (5)
2017 (5)
2008 (5)
2007 (5)
2006 (3)
2023 (2)
2019 (2)
2004 (1)

CHEBI ID

CHEBI:30769 (2)
CHEBI:10136 (2)
CHEBI:116314 (2)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:17015 (2)
CHEBI:18132 (2)
CHEBI:3899 (2)
CHEBI:42539 (2)
CHEBI:46961 (2)
CHEBI:48131 (2)
CHEBI:63866 (2)
CHEBI:87625 (2)
CHEBI:100246 (1)
CHEBI:10025 (1)
CHEBI:10138 (1)
CHEBI:10216 (1)
CHEBI:104011 (1)
CHEBI:10724 (1)
CHEBI:111517 (1)
CHEBI:1157 (1)
CHEBI:132121 (1)
CHEBI:132549 (1)
CHEBI:132722 (1)
CHEBI:132983 (1)
CHEBI:134014 (1)
CHEBI:134015 (1)
CHEBI:134190 (1)
CHEBI:134480 (1)
CHEBI:135821 (1)

Metabolite Name

(R)-mandelic Acid (2)
1-Methyladenosine (2)
12,13-EpOME (2)
2-Keto-6-acetamidocaproate (2)
3-Methyladenine (2)
5'-Methylthioadenosine (2)
Anserine (2)
Cortolone (2)
Deoxycytidine (2)
Deoxyguanosine (2)
Guanosine (2)
Hypoxanthine (2)
L-Arginine (2)
L-Aspartic acid (2)
L-Glutamine (2)
L-Serine (2)
L-Threonine (2)
Malic acid (2)
Oleamide (2)
Ornithine (2)
Phytosphingosine (2)
Prostaglandin A1 (2)
Riboflavin (2)
Sedoheptulose 1-phosphate (2)
Stearic acid (2)
Taurine (2)
Temurin (2)
Uracil (2)
Uridine (2)
Urocanic acid (2)

First Public Date

2025 (19)
2026 (10)
2013 (10)
2024 (8)
2014 (8)
2021 (7)
2020 (5)
2017 (5)
2019 (4)
2023 (3)
2018 (3)
2015 (3)
2022 (1)
2016 (1)

Modelling Approach

Constraint-based model (3)
Ordinary differential equation model (2)

Lab affiliation

Department of Microbial Proteomics, Institute of Microbiology, University of Greifswald, Greifswald, Germany (2)
Institute of Microbiology (2)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University of Munich (TUM) Gregor-Mendel-Strasse 4 85354 Freising (1)
Center for Synthetic Microbiology (SYNMIKRO) & Faculty of Chemistry, Philipps-University Marburg, 35043 Marburg, Germany (1)
Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia. Pok Man Leung, pok.leung@monash.edu, Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia Ralf B. Schittenhelm, ralf.schittenhelm@monash.edu, Monash Proteomics and Metabolomics Facility and Department of Biochemistry, Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia (1)
Dr Thierry Le Bihan Quantitative Proteomics lecturer and technology lead Institute of Structural and Molecular Biology SynthSys – Synthetic and Systems Biology School of Biological Sciences, University of Edinburgh Room 3.06, C.H Waddington Building, Max Born Crescent Edinburgh, EH9 3BF Phone +44 (0)131 651 9073 thierry.lebihan@ed.ac.uk (1)
Guangdong Institute of Microbiology, Guangdong Academy of Sciences (1)
Hydrosystems and bioprocesses unit research (HBAN), Environmental Technologies Department, Irstea, France (1)
Industrial Microbiology and Biotechnology Laboratory, School of Molecular and Cell Biology, University of the Witwatersrand, South Africa. (1)
Institut für Mikrobiologie Universität Greifswald Felix Hausdorff Str.8 17489 Greifswald Tel.: (+49) 03834 420 5903 Fax.: (+49) 03834 420 5002 (1)
Laboratory of Industrial Microbiology and Biotechnology, Department of Animal Resources Science, Dankook University (1)
Laboratory of Molecular Microbiology and Biotechnology, Department of Biology, Faculty of Sciences, University of Chile, Santiago, Chile. (1)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (1)
Titular Professor Laboratory of Microbiology Andalusian Institute for Grape and Grapevine Research (CAIV) Marine and Environmental Sciences Faculty (CASEM) University of Cadiz (1)
University of Greifswald, Institute of Microbiology, Department of Microbial Physiology and Molecular Biology, Greifswald, Germany (1)
VIB/KU LEUVEN Center for Microbiology (1)