Infectious particles

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Transcriptomics (185)
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Repository

biostudies-arrayexpress (173)
pride (76)
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Tissue

Cell culture (20)
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Salmonella infectious disease (1)
Severe acute respiratory syndrome (1)
Tick borne (1)
Tuberculosis (1)

Technology Type

Mass Spectrometry (76)
Shotgun proteomics (42)
Bottom-up proteomics (22)
Data-dependent acquisition (12)
Mass spectrometry (9)
Affinity purification coupled with mass spectrometry proteomics (8)
Gel-based experiment (6)
Data-independent acquisition (5)
Mass spectrometry assay (2)
SWATH MS (2)
NMR spectroscopy (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)

Instrument Platform

Illumina NovaSeq 6000 (13)
TSQ Quantiva (4)
Liquid Chromatography MS - positive - reverse phase (4)
NextSeq 500 (3)
G2565AA DNA microarray scanner [Agilent] (2)
Illumina HiSeq 1500 (2)
Illumina HiSeq 2000 (2)
Hybridized arrays (1)
Total RNA from honey bee brains (1)
Labeled RNA (1)
Honey bee (Apis mellifera) colony. (1)
Brains of infected and control honey bees (1)
White-eye pupae, purified DWV particles (1)
White eye pupae without manipulation. (1)
Affymetrix Primeview Human Gene Expression Array (1)
Sequel (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
G2565BA DNA microarray scanner [Agilent] (1)
Illumina NovaSeq X (1)
None (1)
Ion Torrent Proton (1)
NextSeq 2000 (1)
Illumina HiSeq 3000 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap (1)
Orbitrap Fusion ETD (1)
Q Exactive (1)
Q Exactive HF (1)
Q Exactive HF Ultra High Mass Range (Thermo Scientific) (1)
Q Exactive Plus (1)

Publication Date

2026 (29)
2015 (26)
2014 (22)
2013 (22)
2025 (20)
2022 (19)
2012 (18)
2021 (16)
2010 (15)
2023 (14)
2020 (14)
2016 (12)
2011 (12)
2008 (11)
2024 (10)
2018 (9)
2017 (8)
2006 (6)
2005 (6)
2019 (5)
2009 (5)
2007 (4)

CHEBI ID

CHEBI:16704 (3)
CHEBI:16027 (3)
CHEBI:17368 (3)
CHEBI:28997 (2)
CHEBI:64424 (2)
CHEBI:16192 (2)
CHEBI:64525 (2)
CHEBI:64526 (2)
CHEBI:64446 (2)
CHEBI:66859 (2)
CHEBI:64504 (2)
CHEBI:64520 (2)
CHEBI:64523 (2)
CHEBI:64433 (2)
CHEBI:66857 (2)
CHEBI:64516 (2)
CHEBI:64517 (2)
CHEBI:66848 (2)
CHEBI:66849 (2)
CHEBI:66850 (2)
CHEBI:64575 (2)
CHEBI:15846 (2)
CHEBI:33198 (2)
CHEBI:16119 (2)
CHEBI:17750 (2)
CHEBI:6650 (2)
CHEBI:15971 (2)
CHEBI:16856 (2)
CHEBI:17568 (2)
CHEBI:16695 (2)

Metabolite Name

Hypoxanthine (2)
AMP (2)
L-glutamic acid (2)
L-histidine (2)
Glutathione (2)
Uridine (2)
Hypoxanthine (2)
5-carboxymethyluridine (1)
8-oxoguanosine (1)
5-methyl-2'-O-methyluridine (1)
4-(4-hydroxyphenyl)sulfonylphenol (1)
NAD⁺ (1)
Glu-glu (1)
Dihydrouridine (1)
Tricarballylic acid (1)
2-O-sulfolactic acid (1)
S-Adenosyl-L-methioninamine (1)
Octulose 1-phosphate (1)
Methyl succinic acid (1)
Methyl glutaric acid (1)
Homovanillic acid (HVA) (1)
Guanosine 3'-monophosphate (1)
Glucose phosphate (1)
Isobutyryl-CoA (1)
Bis-(3-/5-)-cyclic diGMP (1)
Aminoimidazole ribotide (AIR) (1)
6-Phospho-D-gluconolactone (1)
Sedoheptulose 1-phosphate (1)
SM(d18:1/24:2) (1)
SM(d18:1/18:2) (1)

First Public Date

2026 (15)
2013 (10)
2024 (9)
2022 (8)
2014 (6)
2025 (4)
2020 (4)
2018 (4)
2023 (3)
2019 (3)
2017 (3)
2021 (1)
2016 (1)
2015 (1)

Classification

viruses (17)
fungi (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (114)
RNA-seq of coding RNA (28)
Unknown experiment type (4)
RNA-seq of total RNA (4)
ChIP-chip by array (3)
ChIP-seq (3)
Methylation profiling by high throughput sequencing (3)
RNAi profiling by array (2)
DNA-seq (2)
Methylation profiling by array (2)
RNA-seq of coding RNA from single cells (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
Comparative genomic hybridization by array (1)
MicroRNA profiling by array (1)

Release Date

2022 (412)
2021 (359)
2020 (288)
2023 (262)
2024 (236)
2025 (231)
2019 (195)
2017 (188)
2016 (184)
2018 (169)
2015 (168)
2014 (150)
2012 (113)
2013 (111)
2011 (103)
2010 (76)
2008 (55)
2009 (50)
2006 (45)
2005 (41)
2007 (31)
2026 (22)
2004 (18)
2002 (15)
2000 (13)
2003 (12)
1999 (10)
1998 (10)
2001 (9)

Lab affiliation

The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (4)
Institut Pasteur, Université Paris Cité, CNRS UMR3569, Unité Biologie des ARN et Virus Influenza, Paris, France (2)
1Department of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles, CA, USA 2Institute for Quantitative and Computational Biosciences, University of California, Los Angeles, Los Angeles, CA, USA 3Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA, USA (1)
AnimalS health Territories Risks Ecosystems (ASTRE Unit CIRAD), France (1)
Assistant Professor Chemistry and Biochemistry University of Texas at Arlington Box 19065 700 Planetarium Place, Room 130 Arlington, TX 76019 United States (1)
Austrian Centre of Industrial Biotechnology (ACIB), Petersgasse 14, 8010 Graz, Austria; Medical University of Graz, Institute of Pathology, Research Unit Functional Proteomics and Metabolic Pathways, Stiftingtalstrasse 24, 8010 Graz, Austria; Omics Center Graz, BioTechMed-Graz, Stiftingtalstrasse 24, 8010 Graz, Austria. (1)
Biological Sciences Division, Pacific Northwest National Laboratory (1)
Biomolecular Mass Spectrometry and Proteomics Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands, Janssen Infectious Diseases and Vaccines, Crucell Holland B.V., Leiden, the Netherlands (1)
COI-NDM (University of Oxford) (1)
Cambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID), Jeffrey Cheah Biomedical Centre, Department of Medicine, University of Cambridge, Cambridge, CB2 0AW, UK (1)
Cambridge Institute of Therapeutic Immunology and Infectious Disease (CITIID), University of Cambridge, Cambridge, UK (1)
Cancer Metabolism and Microenvironment Program, NCI-Designated Cancer Center, Sanford Burnham Prebys Medical Discovery Institute (1)
Cellular and Molecular Medicine University of Bristol Bristol BS8 1TD (1)
Childrens Hospital of Pennsylvania University of Pennsylvania (1)
DGA CBRN Defence Center, Vert-le-Petit, France (1)
Departament de Bioquímica i Biologia Molecular, Facultat de Ciències Biològiques, Universitat de València, Burjassot (Valencia), Spain (1)
Department of Biochemistry and Molecular Biology, Oklahoma Center for Respiratory and Infectious Diseases, Oklahoma State University, Stillwater, Oklahoma, USA (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Biomedical Sciences, University of Sassari, Italy (1)
Department of Clinical Microbiology, Sahlgrenska University Hospital, SE-41346 Gothenburg, Sweden (1)
Department of Epidemiology, Preclinical Research and Advanced Diagnostics, National Institute of infectious diseases IRCCS Lazzaro Spallanzani, Rome (1)
Department of Immune Modulation, Universitaetsklinikum Erlangen, Erlangen, Germany (1)
Department of Immune Modulation,Universitaetsklinikum Erlangen, Germany (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota 55905, United States (1)
Department of Medical Microbiology and Infectious Diseases University of Manitoba 745 Bannatyne Avenue Winnipeg, MB, Canada, R3E 0J9 (1)
Department of Microbiology University of Massachusetts Amherst USA (1)
Department of Microbiology; Icahn School of Medicine at Mount Sinai; New York, NY, 10029; USA (1)
Department of Parasitology, Faculty of Science, Charles University, Prague, Czech Republic (1)
Department of Rickettsiology Biomedical Research Center Sloval Republic (1)
Drug Metablism and Pharmackinetics, Abbvie Bioresearch Center (1)

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Mass spectrometric characterization of HSV-1 L-particles from human dendritic cells and BHK21 cells and analysis of their functional role

Herpes simplex virus type 1 (HSV-1) is a very common human pathogenic virus among the world’s 12 population. The lytic replication cycle of HSV-1 is, amongst others, characterized by a tripartite viral 13 gene expression cascade, the assembly of nucleocapsids involving their subsequent nuclear egres...

ORGANISM(S): Mesocricetus auratus (Golden hamster)

2021-09-09 | PXD020845 | Pride

Hsv-1 Light particles 9 t cell stimulation Mass spectrometry Immunomodulatory effect Heavy particles Bhk21 cells Dendritic cells

Mass spectrometric characterization of HSV-1 L-particles from human dendritic cells and BHK21 cells and analysis of their functional role Part B

ORGANISM(S): Homo sapiens (Human)

2021-09-09 | PXD020846 | Pride

Hsv-1 Light particles 9 t cell stimulation Mass spectrometry Immunomodulatory effect Heavy particles Bhk21 cells Dendritic cells

Gene expression profile after oral vaccination against infectious pancreatic necrosis virus (IPNV)

Oral immunization of trout against infectious pancreatic necrosis virus (IPNV) have been recently reported by using a DNA vector coding the viral capsid VP2 gene encapsulated in alginate microspheres. We report here an study of the transcripts in head kidney and pyloric ceca 7 days after oral vaccin...

ORGANISM(S): Oncorhynchus mykiss

2012-07-18 | E-GEOD-31591 | biostudies-arrayexpress

Transcription profiling of human cells transfected with MLV and HIV1 virus-like particles

We hypothesize that cellular mRNAs are incorporated nonselectively into retrovirus particles Experiment Overall Design: This study utilizes microarray analysis to test these hypotheses. Transfected cells were grown, RNA was isolated and used for global gene expression profiling (Affymetrix Human U13...

ORGANISM(S): Homo sapiens

2008-06-15 | E-GEOD-7213 | biostudies-arrayexpress

Quantitative analysis of particles, genomes and infectious particles in supernatants of haemorrhagic fever virus cell cultures.

Not available

S-EPMC3056813 | biostudies-literature

Adenovirus particles SILAC analysis of different batches and mutant virus

We used stable isotope labelling of amino acids in cell culture coupled with high throughput quantitative mass spectrometry to analyse the protein composition of highly purified wild type adenoviruses, mutant adenoviruses lacking an internal protein component (protein V) and recombinant adenoviruses...

ORGANISM(S): Homo sapiens (Human)

2014-08-08 | PXD001120 | Pride

Human adenovirus purified particles

Infectious bursal disease virus

Infectious bursal disease virus Genome sequencing and assembly

PRJNA488138 | ENA

LC-MS/MS analyses of purified virions of influenza A and B viruses, grown in a range of hosts.

LC-MS/MS analyses of purified virions of influenza A and B viruses, grown in a range of hosts. Described in Hutchinson et al. 'Conserved and host-specific features of influenza virion architecture.'

ORGANISM(S): Bos Taurus (ncbitaxon:9913) Canis Familiaris (canine) Influenza Viruses Gallus Gallus (ncbitaxon:9031)

2014-06-16 | MSV000078740 | MassIVE

Influenza Virus Reassortment Is Enhanced by Semi-infectious Particles but Can Be Suppressed by Defective Interfering Particles.

Not available

S-EPMC4595279 | biostudies-literature

Chaperone-mediated disaggregation of infectious prions releases particles that seed new prion formation in a strain-specific manner.

Not available

S-EPMC11758957 | biostudies-literature

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