Infectivity - OmicsDI

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Unknown (7082)
Transcriptomics (1052)
Genomics (391)
Proteomics (224)
Metabolomics (68)
Other (16)
Models (12)
Multiomics (1)
Methylation profiling (1)

Organisms

Homo sapiens (196)
Mus musculus (92)
Candida albicans (38)
Staphylococcus aureus (36)
Mycobacterium tuberculosis (34)
Escherichia coli (29)
Pseudomonas aeruginosa (26)
Helicobacter pylori (23)
Salmonella enterica subsp. enterica serovar Typhimurium (20)
Vibrio cholerae (18)
Streptococcus pneumoniae (16)
Francisella tularensis (15)
Campylobacter jejuni (14)
Streptococcus pneumoniae D39 (14)
Listeria monocytogenes (14)
Gallus gallus (13)
Actinobacillus pleuropneumoniae (10)
Burkholderia cenocepacia (10)
Aspergillus fumigatus (9)
Arabidopsis thaliana (9)
Yersinia pseudotuberculosis (9)
Escherichia coli O157:H7 (8)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (8)
Entamoeba histolytica (8)
Pseudomonas aeruginosa PAO1 (8)
Bos taurus (8)
Salmonella enterica (8)
Yersinia pestis (8)
Bordetella pertussis (4)
Severe acute respiratory syndrome coronavirus 2 (2)

Organisms

Homo sapiens (71)
Mus musculus (23)
Histoplasma capsulatum (3)
Drosophila melanogaster (3)
Sus scrofa (3)
Chlorocebus (2)
Ichthyophthirius multifiliis (2)
Leishmania infantum (2)
Schistosoma mansoni (2)
Apis mellifera (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
synthetic construct (2)
Macaca mulatta (2)
freshwater metagenome (2)
Salmonella enterica subsp. enterica (2)
Vibrio cholerae (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Pseudomonas aeruginosa (2)
Staphylococcus aureus (2)
Plasmodium cynomolgi ATCC 30046 (1)
Plasmodium cynomolgi strain B (1)
Candidatus Arthromitus sp. GSU (1)
Candidatus Arthromitus sp. 'Pasteur' (1)
Yersinia pestis KIM10+ (1)
Plasmodium chabaudi (1)
Trypanosoma cruzi marinkellei (1)
Brucella ceti TE28753-12 (1)
Borreliella mayonii (1)
Curvibacter sp. AEP1.3 (1)
Austwickia sp. TVS 96-490-7B (1)

Repository

biostudies-arrayexpress (982)
ENA (324)
geo (137)
MassIVE (75)
MetaboLights (68)
pride (63)
PeptideAtlas (27)
jPOST (24)
iProX (23)
EGA (12)
BioModels (11)
PAXDB (8)
EVA (6)
PanoramaPublic (5)
Cell Collective (1)
GPMDB (1)

Tissue

Cell culture (9)
Epithelial cell (7)
Blood plasma (3)
Hepatocyte (3)
Blood (2)
Kidney (2)
T cell (2)
Airway fluid (1)
Brain (1)
Cell line cell (1)
Cell suspension culture (1)
Culture condition:yeast extract-grown cell (1)
Defense response to fungus (1)
Endothelial cell (1)
Extracellular membrane-bounded organelle (1)
HepG2 cell (1)
JURKAT cell (1)
Kidney distal convoluted tubule epithelial cell (1)
Lung (1)
Macrophage (1)
Mycelial cord (1)
Ovary (1)
Permanent cell line cell (1)
Primary cell (1)
Prokaryotic cell (1)
Response to fungus (1)
Somatic cell (1)
Spleen (1)
T-lymphoblast (1)
Trachea (1)

Disease

COVID-19 (3)
Influenza (3)
Cryptococcosis (2)
Disease free (2)
Human immunodeficiency virus infectious disease (2)
Pertussis (1)
Pseudomonas aeruginosa rsmA mutant infected (1)
Acute lymphocytic leukemia (1)
K173 influenza (1)
Uninfected (1)
Autosomal Recessive Retinitis Pigmentosa (1)
IBDV infected (1)
Not infected (1)
Chicken Anaemia Virus infected (1)
Normal (1)
Not Available (1)
Acute T cell leukemia (1)
Chlamydia trachomatis infectious disease (1)
Cutaneous leishmaniasis (1)
Cystic fibrosis (1)
Dengue disease (1)
Dengue hemorrhagic fever (1)
Dengue shock syndrome (1)
Hepatitis B (1)
Leishmaniasis (1)
Malaria (1)
Recurrent staphylococcal infections (1)
Respiratory syncytial virus infectious disease (1)

Technology Type

Mass Spectrometry (63)
Mass spectrometry (46)
Shotgun proteomics (31)
Mass spectrometry assay (21)
Bottom-up proteomics (18)
Data-dependent acquisition (8)
Data-independent acquisition (5)
Gel-based experiment (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
NMR spectroscopy (3)
Top-down proteomics (2)
All-ion fragmentation (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

NextSeq 500 (17)
Illumina MiSeq (12)
Illumina NovaSeq 6000 (10)
Illumina HiSeq 2000 (9)
Spectronic Helios Alpha UV-Vis spectrophotometer (6)
Illumina HiSeq 2500 (6)
Scanning hardware (5)
Illumina HiSeq 1500 (5)
Ultracentrifuge (4)
Bioanalyser (4)
Variable Atmosphere Incubator (4)
ScanArray [PerkinElmer] (3)
NanoDrop (3)
GenePix 4000B [Axon Instruments] (3)
Illumina NovaSeq X (3)
NextSeq 550 (3)
Illumina HiSeq 4000 (3)
Complete Genomics (2)
GeneQuant (2)
N/C (1)
FastPrep-24 5G bead beater, Qubit Fluorometer (1)
12 well TC-treated plate, LETs buffer, dry ice (1)
Ultrospec 3000 (1)
GenePix 4000B Microarray Scanner (1)
Lightwave (1)
GenePix 4200AL (1)
Helicos (1)
Axon 4000B scanner (1)
ScanArray scanning hardware (1)
ScanArray Lite [PerkinElmer] (1)

Publication Date

2010 (167)
2012 (131)
2013 (127)
2011 (98)
2014 (85)
2025 (80)
2009 (78)
2015 (73)
2024 (68)
2008 (62)
2022 (58)
2026 (56)
2023 (50)
2016 (49)
2005 (46)
2007 (36)
2021 (33)
2020 (30)
2018 (29)
2006 (29)
2019 (16)
2017 (15)
2004 (5)
2001 (1)
2003 (1)

UNIPROT ID/AC

Q0WB82 (2)
P0AAD4 (2)
Q7CH92 (2)
Q7CHI6 (2)
Q0WI04 (2)
P0AGD3 (2)
Q7CJI9 (2)
Q4Z2Z4 (2)
Q7CJ22 (2)
Q7CKU7 (2)
Q74WT5 (2)
Q0WJB5 (2)
P60752 (2)
Q0WH20 (2)
P0ABU7 (2)
Q0WIZ0 (2)
Q7CGI6 (2)
P0ABV2 (2)
Q0WBR9 (2)
Q7CH41 (2)
Q180F2 (2)
Q7CG73 (2)
P25519 (2)
P0C0L7 (2)
Q0WCN6 (2)
Q0WD20 (2)
Q0WAH3 (2)
P0ABI4 (2)
P13738 (2)
Q7CG77 (2)

CHEBI ID

CHEBI:25597 (2)
CHEBI:7644 (2)
CHEBI:28368 (2)
CHEBI:44505 (2)
CHEBI:71339 (2)
CHEBI:48622 (2)
CHEBI:58754 (2)
CHEBI:11993 (2)
CHEBI:20375 (2)
CHEBI:36148 (2)
CHEBI:20374 (2)
CHEBI:1838 (2)
CHEBI:24328 (2)
CHEBI:14323 (2)
CHEBI:39153 (2)
CHEBI:12156 (2)
CHEBI:20623 (2)
CHEBI:39151 (2)
CHEBI:2115 (2)
CHEBI:16120 (2)
CHEBI:18685 (2)
CHEBI:42060 (2)
CHEBI:342 (2)
CHEBI:44073 (2)
CHEBI:11002 (2)
CHEBI:15588 (2)
CHEBI:18686 (2)
CHEBI:133047 (2)
CHEBI:73912 (2)
CHEBI:17201 (2)

Metabolite Name

L-Phenylalanine (15)
L-Tyrosine (14)
Uracil (11)
L-Threonine (11)
L-Valine (11)
Adenosine (10)
L-Tryptophan (10)
Adenine (10)
L-Isoleucine (10)
Hypoxanthine (10)
Thymine (9)
Spermine (9)
Guanine (9)
L-Pyroglutamic acid (9)
L-Glutamine (9)
Pyroglutamic acid (8)
L-Histidine (8)
Choline (8)
L-Proline (8)
Citric acid (8)
Succinic acid (8)
L-Glutamic acid (8)
Spermidine (8)
Histamine (8)
Uric acid (8)
L-Serine (8)
5-Methyluridine (7)
Phosphoric acid (7)
Glycine (7)
L-Alanine (7)

First Public Date

2025 (47)
2014 (35)
2026 (34)
2022 (32)
2021 (29)
2013 (28)
2024 (25)
2023 (23)
2019 (17)
2020 (15)
2018 (14)
2017 (12)
2016 (7)
2015 (5)
2012 (1)

Modelling Approach

Ordinary differential equation model (5)
Constraint-based model (2)
Computational model (1)
Mathematical model (1)
Population model (1)

Lab affiliation

King's College London (4)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (3)
Icahn School of Medicine at Mount Sinai (2)
Institute for Systems Biology (2)
Instituto de Nanobiotecnologıa (NANOBIOTEC), UBA-CONICET-Universidad de Buenos Aires, Buenos Aires, Argentina (2)
Molecular and Cellular Biology, University of Guelph, Canada (2)
-The Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, Victoria 3052, Australia. -Department of Medical Biology, University of Melbourne, Parkville, Victoria 3010, Australia. (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
Boston College (1)
CAS Key Laboratory for Quantitative Engineering Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences (1)
Carlos Chagas Institute, Fiocruz Parana, Brazil (1)
Centre for Proteomic Research, University of Southampton (1)
Centre for Virus Research, University of Glasgow (1)
Chair in Infection and Global Health, Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, (1)
Civil and Environmental Engineering, Virginia Tech, Blacksburg, VA, USA (1)
Defence Research & Development Establishment, Gwalior. (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Biological Sciences, Department of Chemistry, Vanderbilt University. Department of Pathology, Microbiology and Immunology, Vandberbilt University Medical Center (1)
Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas. (1)
Department of Medical Microbiology and Infection Prevention, University of Groningen; University Medical Center Groningen; Groningen, the Netherlands (1)
Department of Microbiology and Immunology, Eulji University School of Medicine,Daejeon, South Korea (1)
Department of Microbiology and Immunology, Peter Doherty Institute for Infection and Immunity, The University of Melbourne, Parkville, Victoria, Australia. (1)
Department of Molecular and Cellular Biology, University of Guelph, 50 Stone Rd. E., Guelph, Ontario, Canada, N1G 2W1 (1)
Department of Parasitology, Institute of Biomedical Sciences, University of Sao Paulo (1)
Department of Parasitology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil (1)
Departments of Chemistry and Biological Sciences, Vanderbilt University (1)
Huazhong Agricultural University (1)
IMVZ, Friedrich-Loeffler-Institut, Greifswald (1)
IPBS, CNRS-UPS, BP 64182, 205 route de Narbonne, F-31077 Toulouse Cedex 04, France (1)
Institute for Biology-Microbiology Freie Universität Berlin Königin-Luise-Strasse 12-16 D-14195 Berlin Germany (1)

IsPrivate

False (11)

Submitter Keywords

Not Peer Reviewed (2)
FROG (2)
Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)
COVID-19 (1)

Classification

viruses (23)
bacteria (21)
protozoa (13)
fungi (3)
helminths (2)

Study type

Transcription profiling by array (676)
RNA-seq of coding RNA (122)
Comparative genomic hybridization by array (47)
Unknown experiment type (43)
ChIP-seq (26)
DNA-seq (12)
RNA-seq of non coding RNA (8)
Other (7)
ChIP-chip by tiling array (6)
RNA-seq of total RNA (6)
Transcription profiling by tiling array (5)
High-throughput sequencing (3)
Genotyping by array (3)
ChIP-chip by array (2)
Transcription profiling by RT-PCR (2)
Methylation profiling by array (2)
Proteomic profiling by array (2)
Transcription profiling by SAGE (1)
Two-color microarray (1)
Human - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (922)
2021 (893)
2023 (607)
2020 (574)
2025 (460)
2024 (451)
2016 (351)
2019 (347)
2018 (339)
2015 (334)
2013 (332)
2010 (331)
2014 (311)
2017 (297)
2012 (295)
2011 (247)
2009 (181)
2008 (166)
2007 (136)
2005 (99)
2006 (97)
2026 (65)
2004 (56)
2003 (45)
2002 (34)
2001 (33)
2000 (26)
1998 (20)
1999 (14)
1997 (1)

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Pseudomonas syringae infectivity correlates to altered transcript and metabolite levels of Arabidopsis Mediator mutants

Rapid metabolic responses to pathogens are essential for plant survival and depend on numerous transcription factors. Mediator is the major transcriptional co-regulator for integration and transmission of signals from transcriptional regulators to RNA polymerase II. Using four Arabidopsis Mediato...

2024-02-19 | MTBLS8105 | MetaboLights

Non-Replicating Mycobacterium tuberculosis Elicits a Reduced Infectivity Profile with Corresponding Modifications to the Cell Wall and Extracellular Matrix

A key feature of Mycobacterium tuberculosis is its ability to become dormant in the host. Little is known of the mechanisms by which these bacilli are able to persist in this state. Therefore, the focus of this study was to emulate environmental conditions encountered by M. tuberculosis in the granu...

ORGANISM(S): Mycobacterium tuberculosis

2016-11-14 | E-BUGS-142 | biostudies-arrayexpress

Lipid Droplet Biogenesis by Phase-Separated pORF3 Facilitates HEV Infectivity

PRJNA1273901 | ENA

The role of glycans and glycosylation in cell-type specific effects on viral infectivity

Our lab has previously used the Glyco v3 gene-chip to analyze RNA from human macrophages and T-cells, as part of a project examining the effect of cellular origin on the viral infectivity of HIV/SIV. Our experiments have led us to hypothesize that the different glycosylation pathways present in macr...

ORGANISM(S): Homo sapiens

2011-06-14 | E-GEOD-29924 | biostudies-arrayexpress

Infectivity, pathogenicity, and immune protection of the pangolin-origin SARS-CoV-2 related coronavirus

PRJNA900563 | ENA

Lipid Droplet Biogenesis by Phase-Separated pORF3 Facilitates HEV Infectivity

Lipid droplets (LDs) are dynamic organelles mediating lipid metabolism and diverse cellular processes. However, the interplay between hepatocyte LDs and hepatitis E remains poorly understood. Using targeted lipidomics and lipid profiling, we reveal in cellular and rodent models that hepatitis E viru...

ORGANISM(S): Homo sapiens

2025-06-09 | GSE299317 | GEO

The role of glycans and glycosylation in cell-type specific effects on viral infectivity

ORGANISM(S): Homo sapiens

2011-06-14 | GSE29924 | GEO

Infectivity, pathogenicity, and immune protection of the pangolin-origin SARS-CoV-2 related coronavirus

The natural host of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) remains elusive. A panel of SARS-CoV-2-related coronaviruses have been identified in pangolins, while the infectivity and pathogenicity of these pangolin-origin coronaviruses (pCoV) to human remains largely unknown. Her...

ORGANISM(S): Homo sapiens

2023-05-25 | GSE217796 | GEO

Influenza virus facilitates its infectivity by activating p53 to inhibit the expression of interferon-induced transmembrane proteins (IFITMs)

PRJNA416117 | ENA

Systems Analysis of a RIG-I Agonist Inducing Broad Spectrum Inhibition of Virus Infectivity

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Homo sapiens

2014-08-21 | E-GEOD-60574 | biostudies-arrayexpress

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