Invertebrate - OmicsDI

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Unknown (4541)
Genomics (862)
Transcriptomics (318)
Proteomics (61)
Metabolomics (48)
Other (7)
Methylation profiling (6)
Models (1)

Organisms

Homo sapiens (121)
Mus musculus (66)
Drosophila melanogaster (40)
Daphnia magna (17)
Rattus norvegicus (16)
Caenorhabditis elegans (13)
Danio rerio (9)
Sus scrofa (7)
Folsomia candida (7)
Ciona intestinalis (7)
Aedes aegypti (5)
Enchytraeus crypticus (4)
Strongylocentrotus purpuratus (3)
Emiliania huxleyi (3)
Aplysia californica (3)
Hyalella azteca (2)
Enchytraeus albidus (2)
Mytilus edulis (2)
Locusta migratoria (2)
Lepeophtheirus salmonis (2)
Equus caballus (2)
Panagrellus redivivus (2)
Gorgonia ventalina (2)
Invertebrate iridescent virus 6 (2)
Oikopleura dioica (2)
Mammalia (1)
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Schistocerca gregaria (1)
Calyptogena magnifica symbiont (1)
Haliotis asinina (1)

Organisms

invertebrate gut metagenome (80)
invertebrate metagenome (62)
Mus musculus (15)
Drosophila melanogaster (12)
Branchiostoma lanceolatum (7)
Ciona intestinalis (7)
Caenorhabditis elegans (6)
soil metagenome (6)
Homo sapiens (6)
Daphnia magna (4)
biofilm metagenome (4)
freshwater metagenome (4)
Danio rerio (4)
unidentified (4)
Diadema antillarum (3)
Enchytraeus crypticus (3)
invertebrate environmental sample (3)
Pomacea canaliculata (3)
Folsomia candida (3)
Botryllus schlosseri (3)
marine metagenome (3)
Invertebrate iridescent virus 22 (2)
Tribolium castaneum (2)
Strongylocentrotus purpuratus (2)
Ciona robusta (2)
Gryllus bimaculatus (2)
Schmidtea mediterranea (2)
Oikopleura dioica (2)
Mytilus coruscus (2)
gut metagenome (2)

Repository

ENA (783)
biostudies-arrayexpress (238)
geo (115)
EGA (58)
pride (46)
MetaboLights (43)
iProX (7)
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NODE (1)

Tissue

Skeleton (10)
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Whole body (1)
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Saliva (1)
Liver (1)
Blood cell (1)

Disease

Wounds and Injuries (10)
Dystrophic (1)
Infected with Drechmeria coniospora (1)
Diabetes mellitus (1)
Plasmodium falciparum malaria (1)
Chagas disease (1)

Technology Type

Mass Spectrometry (46)
Shotgun proteomics (31)
Mass spectrometry (30)
Mass spectrometry assay (8)
NMR spectroscopy (7)
Bottom-up proteomics (7)
Data-dependent acquisition (5)
Top-down proteomics (3)
ILLUMINA, Illumina HiSeq 2500 (2)
Illumina Cardio-MetaboChip (1)
ILLUMINA, Illumina HiSeq 2000 (1)
RNA mass spectrometry (1)
All-ion fragmentation (1)
Data-independent acquisition (1)
Gel-based experiment (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (14)
Illumina HiSeq 4000 (9)
Illumina HiSeq 2500 (7)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (4)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (4)
Illumina HiSeq 2000 (4)
Qubit 4.0 Fluorometer/ Agilen 5300 Fragment Analyzer (3)
FastPrep‑24 homogenizer (MP Biomedicals) (3)
See manuscript (3)
Illumina NovaSeq X (3)
NextSeq 500 (3)
Genewiz library construction hardware (2)
Centrifuge, RNeasy Kit (Qiagen) (2)
Illumina MiSeq (2)
Illumina HiSeq 1500 (2)
NextSeq 550 (2)
Nanodrop 2000c spectrophotometer (1)
Illumina NovaSeq 6000 sequencing platform (Illumina) (1)
Scalpel, dry ice (1)
DNBSEQ-G50 (1)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds. (1)
Scalpel, dry ice. (1)
NCounter Digital Analyzer (1)
NCounter Prep Station (1)
NanoDrop ND-100 (1)
Generic (1)
Quiagen Mini prep kit (1)
Computer (1)
Illumina TruSeq (1)
Not applicable (1)

Publication Date

2010 (42)
2025 (40)
2026 (34)
2013 (33)
2012 (32)
2014 (31)
2020 (30)
2018 (29)
2024 (27)
2019 (19)
2016 (19)
2009 (18)
2022 (17)
2007 (15)
2011 (13)
2008 (13)
2023 (12)
2021 (12)
2015 (12)
2017 (8)
2006 (2)

UNIPROT ID/AC

Q96BI3 (1)
Q5S414 (1)
O70263 (1)
Q6SPF9 (1)
Q9V6X7 (1)
Q6IAD4 (1)
Q9UBV2 (1)
P28159 (1)
Q92585 (1)
P49757 (1)
Q9BR09 (1)
Q8TE56 (1)
Q8NES3 (1)
Q9NZ42 (1)
O00548 (1)

CHEBI ID

CHEBI:30769 (13)
CHEBI:17750 (12)
CHEBI:16027 (12)
CHEBI:16919 (12)
CHEBI:17287 (11)
CHEBI:25017 (11)
CHEBI:15428 (11)
CHEBI:15741 (11)
CHEBI:17268 (11)
CHEBI:17154 (11)
CHEBI:16704 (11)
CHEBI:25094 (10)
CHEBI:16695 (10)
CHEBI:24898 (10)
CHEBI:27266 (10)
CHEBI:15891 (10)
CHEBI:16449 (10)
CHEBI:32816 (10)
CHEBI:78320 (10)
CHEBI:16737 (10)
CHEBI:27897 (10)
CHEBI:17596 (10)
CHEBI:17202 (9)
CHEBI:18186 (9)
CHEBI:16708 (9)
CHEBI:6650 (9)
CHEBI:17568 (9)
CHEBI:29016 (9)
CHEBI:18287 (1)
CHEBI:36080 (1)

Metabolite Name

Taurine (10)
Glucose (9)
Tetradecanedioic acid (8)
Inosine (8)
Uridine (7)
Glycine (7)
UMP (7)
Pantothenic acid (7)
Isoleucine (7)
Glutamine (7)
Embelin (7)
Uridine (7)
Creatine (7)
Leucine (6)
Pentadecanoic acid (6)
Glycine (6)
Lysine (6)
AMP (6)
Creatinine (6)
Citrate (6)
Lactate (6)
4-Nitrophenol (6)
Uracil (6)
Glycerol (6)
Uracil (6)
Valine (6)
Betaine (6)
Undecanedioic acid (6)
Citric acid (6)
Malic acid (6)

First Public Date

2024 (107)
2025 (101)
2026 (89)
2023 (68)
2020 (68)
2022 (58)
2021 (52)
2013 (52)
2019 (49)
2018 (43)
2014 (34)
2017 (31)
2016 (19)
2015 (10)
2012 (1)
2010 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Department of Ecology & Evolutionary Biology, University of California, Los Angeles, CA (8)
Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA (2)
Molecular Parasitology and Entomology Unit,Laboratory of Malaria and Vector Research, National Institutes of Health. USA. (2)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (2)
Seoul National University (2)
Max-Planck-Institut für Biochemie Abt. Proteomics und Signaltransduktion Am Klopferspitz 18 D-82152 Martinsried (1)
Johns Hopkins Bloomberg School of Public Health (1)
jiangxi (1)
Microbes & Pathogen Biology, The Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, Belfast, United Kingdom (1)
Institute for Genetics and Cologne Excellence Cluster for Cellular Stress Responses in Aging-Associated Diseases (CECAD) University of Cologne Joseph Stelzmann Strasse 26 50931 Cologne, Germany Phone number: +49 22147884172 Fax number: +49 221 478 84045 E-mail: dvilchez@uni-koeln.de (1)
Department of Oncology, Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington DC 20007, USA (1)
Laboratório de Biologia Molecular e Sistêmica de Tripanossomatídeos, Instituto Carlos Chagas, Fundação Oswaldo Cruz, Curitiba, Parana, Brazil (1)
University of Sheffield (1)
LAB SCT1006-2, Department of Biology, Hong Kong Baptist University, Hong Kong (1)
Department of Biosciences, Univesity of Oslo (1)
Instituto de >Investigaciones Sanitarias de Santiago de Compostela (1)
Faculty of Biology, Technion-Israel Institute of Technology, Haifa, Israel (1)
Institute of Oceanology, Chinese Academy of Sciences, 164 West Xingang Road, Guangzhou 510301, China. (1)
Investigador Ramon y Cajal, grupo Bionanosurf, Instituto de nanociencia y materiales de ARagón (Zaragoza, España) (1)
University of Osnabrück, Department of Zoology & Developmental Biology, 49076 Osnabrück, Germany (1)
Centre for Bioinnovation, University of the Sunshine Coast, Maroochydore, Queensland 4558, Australia. (1)
Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, Brazil (1)
Biochemistry and Molecular Biologoy, University of British Columnbia, Canada (1)
Molecular Parasitology and Entomology Unit; Laboratory of Malaria and Vector Research; National Institutes of Health (1)
University of Vienna, Division of Microbial Ecology (1)
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China (1)
Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark. (1)
Department of Medical Biochemistry and Cell Biology, Instititute of Biomedicine at the Sahlgrenska Academy, University of Gothenburg, SE-40530 Gothenburg, Sweden (1)
Instituto Carlos Chagas, Fundação Oswaldo Cruz (Fiocruz), Curitiba, Brazil. (1)
Department of Biochemistry, Genetics and Immunology, University of Vigo, Spain (1)

IsPrivate

False (1)

Classification

bacteria (13)
viruses (7)
protozoa (3)
helminths (1)
fungi (1)

Study type

Transcription profiling by array (129)
RNA-seq of coding RNA (48)
RNA-seq of non coding RNA (12)
ChIP-seq (7)
Unknown experiment type (4)
ChIP-chip by tiling array (4)
RNA-seq of total RNA (4)
Animal - High-throughput sequencing (3)
Comparative genomic hybridization by array (3)
Other (3)
RNA-seq of coding RNA from single cells (3)
MicroRNA profiling by high throughput sequencing (2)
DNA-seq (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Bisulfite-seq (1)
Single nucleus RNA sequencing (1)

Release Date

2022 (419)
2021 (373)
2023 (338)
2018 (337)
2020 (331)
2025 (316)
2019 (301)
2017 (277)
2024 (269)
2016 (259)
2015 (246)
2014 (239)
2013 (193)
2012 (175)
2011 (121)
2010 (121)
2008 (98)
2009 (85)
2007 (68)
2026 (59)
2006 (40)
2005 (30)
2004 (22)
2000 (11)
2002 (9)
2001 (9)
1999 (9)
1998 (9)
2003 (7)
1997 (7)

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Biodiversity in marine invertebrate responses to acute warming revealed by a comparative multi-omics approach

Understanding species' responses to environmental change underpins our abilities to make predictions on future biodiversity under any range of scenarios. In spite of the huge biodiversity in most ecosystems, a model species approach is often taken in environmental studies. To date, we still do not k...

2016-06-23 | MTBLS336 | MetaboLights

Gene expression microarray analysis of heat stress in the soil invertebrate Folsomia candida

Temperature is an important ecological condition, and sudden temperature changes in soil can induce stress in soil-dwelling invertebrates. Soil animals can move to more favorable habitats and/or adapt physiologically to a stressful environment. Hyperthermic conditions will impact gene expression as ...

ORGANISM(S): Folsomia candida

2010-06-24 | E-GEOD-17024 | biostudies-arrayexpress

invertebrate metagenome

Microbial diversity of aquatic invertebrate in eutrophic lake

PRJNA299090 | ENA

invertebrate

invertebrate Metagenome

PRJNA603351 | ENA

Soil invertebrate communities in two forest types

PRJNA724931 | ENA

invertebrate metagenome

invertebrate metagenome Raw sequence reads